>input_sequence_64651
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ATGAAGTCCATCGGCAGCCGGGACAAGCTGCAGGCGGCGGCGGCGGCGACGGGTCCCCGGCGGGTGCTGCTGCTGGTCTT
CGCCTCCTGCTTCGCCTTCGCCACGCTCCTCACCTTCCTCTACACCTCCTCCGGCTTCGCCTCCGCCGCGTCCTCCGGCT
CGCGCCTGGGTTCGTCGTCCTCGTCTAACGCGGCGGCCGGCTCCGGGGCGGCGCTGCCGCTGCCGGTGTTCGACGCGCTG
GTCCACTACGCCTCCTTCTCCAACGCCACGCACCGGATGACGGACACGGACATCCGGGCCATCTCCGCCATCCTGCGCGC
GCGGGGGCCCTGCAACCTGCTCGTCTTCGGCCTGGGCGCCGAGTCGCCGCTCTGGCTCGCGCTCAACCACGGCGGCCGCA
CGGTGTACCTGGACGAGAACGAGTTCTACGTCAAGTACCTGGAGCCGCGCCACCCGGGGCTGGAGGCCTACGACGTCTCC
TACACCACCAAGGTGCGCGACTTCCGGGACCTGCTGGAGGCGGCCCGCGGCTCCCGCGCCGCCGAGTGCCGGCCGGTGCA
GAACCTGCTCTTCTCCGAGTGCCGGCTCGCCATCAACGACCTGCCCAACGAGCTCTACGACGTGCCCTGGGACGTGGTGC
TCATCGACGGGCCGTCCGGGTGGAACCCCAACTCCCCCGGCCGGATGCCGTCCATCTTCACCACGGCCGTGCTCGCCCGC
TCCGGCGCCACCGCCGCCAAGGGCCCCACGGACGTGCTGGTGCACGACTTCAACTTCGAGGTGGAGCAGGTGGTGAGCAA
GGAGTTCCTGTGCGACGAGAACCGGGTCGCCGGCAGCGGCACGCCCTCGCTCGCCCACTACGTCATCCGCTCCGGCGGCC
CCGCCGACGCCTTCTGCGCCGCCGGCCAGGACGGCCGGGCCACGTCCGAGGAGAAGACCCGCCGCAAGTAA---------
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>chr2A_1_TraesCS2A01G512400
GGCCAATGCGCAAATTCTCAATTTCTCATCAATGTCAGATGCCGTATGACGCCGAGTTTCACTCACTCATTCATTCACAC
ACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACACCGCGTCCTCCTCTGAGACCCCCACGCTCATACCATG
ATGACACCAGCCCGAGAGTACGTACGTCCTCCTACAAGGCCGGACTTTACGGGCTCCGTCACAGCGTTCAGTAGTCAGCA
GCGACCCACCCGCCAAAAACTAATGCAAAAGCCACACACCAGCCAAATAATACCACGCCCTCTTCCTCCGCACGAACAAC
GTGCCCCGACCCGACCCAACCCGACGCGGTAGATGGCGTCGAGACAGCGTAACAACTCTCCCCAGCCTCCACTCACTCCC
CTGCTACTTGAACCCACCAAAATATCGCACCTTCCTCCCCCAATCCGAGCTGAGCCAAGCTGGGTCGACCGAGAG-----
-AACACACACACACGAGGCCAGCTGACCTTTCCCCTCTCCTCCCCACGGTCTCCGTCCCCACGCAGCTCAGCCACGCCGA
TTGATTCTCCCATCGTTCCATCCCCACGCAGCTCCTTGGG----------------------------------CGATCG
ATGAAGTCCATCGGCAGCCGGGACAAGCTGCAGGCGGCGGCGGCGGCGACGGGTCCCCGGCGGGTGCTGCTGCTGGTCTT
CGCCTCCTGCTTCGCCTTCGCCACGCTCCTCACCTTCCTCTACACCTCCTCCGGCTTCGCCTCCGCCGCGTCCTCCGGCT
CGCGCCTGGGTTCGTCGTCCTCGTCTAACGCGGCGGCCGGCTCCGGGGCGGCGCTGCCGCTGCCGGTGTTCGACGCGCTG
GTCCACTACGCCTCCTTCTCCAACGCCACGCACCGGATGACGGACACGGACATCCGGGCCATCTCCGCCATCCTGCGCGC
GCGGGGGCCCTGCAACCTGCTCGTCTTCGGCCTGGGCGCCGAGTCGCCGCTCTGGCTCGCGCTCAACCACGGCGGCCGCA
CGGTGTACCTGGACGAGAACGAGTTCTACGTCAAGTACCTGGAGCCGCGCCACCCGGGGCTGGAGGCCTACGACGTCTCC
TACACCACCAAGGTGCGCGACTTCCGGGACCTGCTGGAGGCGGCCCGCGGCTCCCGCGCCGCCGAGTGCCGGCCGGTGCA
GAACCTGCTCTTCTCCGAGTGCCGGCTCGCCATCAACGACCTGCCCAACGAGCTCTACGACGTGCCCTGGGACGTGGTGC
TCATCGACGGGCCGTCCGGGTGGAACCCCAACTCCCCCGGCCGGATGCCGTCCATCTTCACCACGGCCGTGCTCGCCCGC
TCCGGCGCCACCGCCGCCAAGGGCCCCACGGACGTGCTGGTGCACGACTTCAACTTCGAGGTGGAGCAGGTGGTGAGCAA
GGAGTTCCTGTGCGACGAGAACCGGGTCGCCGGCAGCGGCACGCCCTCGCTCGCCCACTACGTCATCCGCTCCGGCGGCC
CCGCCGACGCCTTCTGCGCCGCCGGCCAGGACGGCCGGGCCACGTCCGAGGAGAAGACCCGCCGCAAGTAATCGAGACCC
GCACTTTGATTAATTAGCCGCCCCCCTCTCCTCTCTAATTCTTGTTATTATCATTTCTT----TTCTTCTTCTTTTTTGT
GACATATACGAGTAATATATGTTTGTTGTTTTTTTGGGAACAATAATTGTAACAAGAAAGGCTCCTTCGATCAAAAGTGT
AACAATCAATCGTGACGGCATGATTGATCGCCTCGAAAAAAAAATGAAATAGTAGAGGTTAATTTACACTTTGACAGATT
GCTTGGGATCGATTCGACATGTGCTGGTGGGTGGGTGGATCCAT-----CCATCCATCGATCGGGTTGCTTTTACATTTT
CCTTTG-----CCCTGCCCGGTTGCGTGCGTTG------CTCGATAATAAAGGTGGTGGGATCATATTCATTTGCCCGTC
GT-ATTTTGGTCATTAATGAGCGAGGGCGTCGTTGCTTTGATCTGATCTGATCAAGAAGTGTCTCGGATCGGCAGTCAGT
TCATTGGAGTCGCTGTCGTT----GGGCTGATGCGCCGTTGGATCCGTGGAAGATGTCCATGTTTCGCAGCAACGTCCGA
CGGCTC-----AACGAACTGGGGGCATAGCGTATCCTCGTCTTGACCCTTTGTGGTATGCCAACATGGGCAACATGTGCA
GTCTACGTGGCAGTGATCAGACACCAACCATGATGCCAATACAAACGAGCACATGTGTGATCTCTG----------CTAG
ACTAAAAGAAACTTGATATTGGGACAGTGCTAC---AGATCAAAAGCAATTTTTCCCAACTTGATTGACTGTGCTGCCCG
CCGCCGCTGCGGCGTCGTTGTCGCCGGTCGCTGACGCTGGCGCCGGCAG-----------GTACGGGGGCGGCGGTTAGT
GGTCAGCTCGGACGTGCTGCCTGTCACCGGCTTGCGCCTGTGCGCGATCGTGTGTGCCCAACAGCTCATAGGACGATCAT
AAATTGGATTTGGTTAACTTCAAAAAAAAAAATGGATTTGGTTTGCAGGGTATGGAAAAGAAGGAGCGTTGGTACAGCCT
GCCCC
>chr2D_17
----------------CTCAATTTCTCATCAATGTCAGATGCCGTATGATGACGAGTT--------TCATTCATTCACAC
ACA-----------------------------------------------------------------------------
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---------------------------------------CACAGCGCGTCCTCCTCTGACACCCC------CATACCATG
ATGACACCAGCACGAGAGCACGTACGTCCTCCTACTAGGCCGAACTTTACGGGCTCCGTTCCGGCGTTCAGTAGTCAGCA
GCGACCCACCCGCCAAAAACTAATGCAAAAGCCACACACCAGCCAAATAATACCACGCCCTCTTCCTCCGCACGAACAAC
GTGCACTGA-CCGACCCGACCCGATGCGGTAGATGGCGTCGAGACAGCGTAACAACTCTCCCCAGCCTCCACTCACTCCC
--GCTACTTGAACCCACCAAAAAATCCCAGCTTCCTCCCCCAATCTGAGCTGAGCCAAGCTGCGTCGACCGAGCA-----
-CACACACACACGA---GCCAGCTGACCTTTTCCCCCTCCTCCCCACGGTCTCCGTCCCCACGCAGCTCAGCCACGCTGA
TTGATTCTTGATTCTTGCTTCCCCTCGACACCCTCCTCCTCCGGCCAGACAAGACCGCGCGGCGGACCGGAGATCGATCG
ATGAAGTCCATCGGCAGCCGGGACAAGCTGCAGGCGGCGGCGGCGGCGACGGGGCCCCGGCGGGTGCTGCTGCTGGTCTT
CGCCTCCTGCTTCGCCTTCGCCACGCTGCTCACCTTCCTCTACACCTCCTCCGGCTTCGCCTCCGCCGCGTCCTCCGGCT
CGCGCCTGGCCTCGGGCTCCTCGTCGGGCGCGGCGGCCGGGTCCGGCGCCGCGCTGCCGCTGCCGGTGTTCGACGCGCTG
GTCCACTACGCCTCCTTCTCCAACGCCACGCACCGGATGACGGACACGGACATCCGGGCCATCTCCGCCATCCTGCGCGC
GCGCGGGCCCTGCAACCTCCTCGTCTTCGGCCTGGGCGCCGAGTCGCCGCTCTGGCTCGCGCTCAACCACGGCGGCCGCA
CCGTGTACCTGGACGAGAACGAGTTCTACGTCAAGTACCTGGAGCCGCGCCACCCGGGGCTGGAGGCCTACGACGTCTCC
TACACCACCAAGGTGCGGGACTTCCGGGACCTGCTGGAGGCGGCCCGGGGCTCGCGCGCCGCCGAGTGCCGGCCGGTGCA
GAACCTGCTCTTCTCCGAGTGCCGGCTCGCCATCAACGACCTGCCCAACGAGCTCTACGACGTGCCCTGGGACGTGGTGC
TCATCGACGGGCCGTCCGGGTGGAACCCCAACTCGCCCGGGCGGATGCCGTCCATCTTCACCACCGCCGTGCTCGCCCGC
TCCGGCGCCACCGCCGCCAAGGGCCCCACGGACGTGCTGGTGCACGACTTCAACTTCGAGGTGGAGCAGGTGCTGAGCAA
GGAGTTCCTCTGCGACGAGAACCGCGTCGCCGGCAGCGGCACGCCGTCCCTCGCGCACTTCGTGATCCGCCCCGGCGGCC
CCGCCGACGCCTTCTGCGCCGCCGGCCAGGACAGCCGGGCCACGTCCGAGGAGAAGACCCGCCGCAAGTAATCGTGACCC
GCACTTTGATTAATTAGCCG-CCCCCTCTCCTCTCTAATTCTTGTTATTATCATTG---------CTTCTTCTTTTTTGT
GACATA--CGAGTAATATATGTTTGTTGTTTTTTTGGGAACAATAATTGTAACAAGAAAGGATCCTTGGATCAGAAGTGT
AACAATCAATCGTGACGACATGATTGATCGCCTCGAAAAGAAAATGAAATAGTAGAGGTTAATTTACACTTAGACAGATT
GCTTGGGATTGATTCGACATGTGCTGGTGGGTGGGTGGATCCAATCCACCCATCCATCGATCCGATTGCTTTTACATTTT
CCTTTCATTTCCTCTGCTCGGTTGCGTGCGTTGGCGTTGCTCGATGAT-AAAGTGGTGGGATCATATTCATCTGCCCGTC
GT-ATT--GGCCATTAATGAGGGAGGGCCTCGTTGCTTTGATCTGATCTGATCAAGAAGTGTCTCGGATCGGCCGTCAGT
TCATTGGAGTCGCTGTCGTCGATCGGGCTGATGCGGCCTTGGATCCGTGGAAGATGTCCGTGTTTCGCAGCAACGTCCGA
CGGCTCGGCTCAACGAACTGGGG-----GCGTATCCTCGGCTCGACCCTTTCTGGTATGGCAACATGGGCAACATGTGCA
GTCTACGTGTCAGTGATCAGGCACCA-CCACCATGCCAGTACAAATGAGCACATGTGTCATCTCTG----------CTAG
GCTAAAAGAAACTTGATATTGGGAGAGTGCTACTGCAGATCAAAAACATTTTTGCCCAACTTGATTGACTGTGCTGCCCG
CCGCCGCTGCCGCGTCGTTGTCGCCGGTCGCTGACGCTGGCACCGGCAG-----------GTACGGGGGCGGCGGTTAGT
GGTCAGCTCGGATGTGCTGCCTGTCACCGGTTTGCGCCTGTGTGCGGTCGTGTGTGTCCAACAGCTCATAGGACGATCAT
AAATTGGATTTGGTT-----------------------------------------------------------------
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>chr2B_525
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--------------------------------------------CGCGTCCTCCTCTGACACCCG------CAGACCATG
ATGACACCAGCTTT-GAGCACGTACGCCCTCCTACAAGGCCGAACTTTACGGGCTCCGTTCCGGCGTTCAGTAGTCAGCA
GCGACCCACCCGCCAAAAACTAATGCAAAAGCCACACACCAGCCAAATAATACCACGCCCTCTTCCTCCGCACGAACAAC
GTGCCCTGA-CCGACCCGACCCGACGCGGTAGATGGCGTCGAGACAGCGTAACAACTCTCCCCAGCCTCCACTCACTCCC
--GCTACTTGAACCCACCAAAAAATCCCAGCTTCCTCCCCCAATCTGAGCCGAGCCAAGCTGCGTCGACCGAGCAGTCGA
GCACACACACACACGAGGCCAGCTGACCTTTCCCCTCTCCTTCCCACGGTCTCCGTCCCCACGCAGCTCAGCCACGCTGA
TTGATTCTTGATTCTTGCTTCCCCTCGACACCCTCCTCCTCCGGCCAGCGAAGACCGCGCGGCGGACCGGAGATCAATCG
ATGAAGTCCATCGGCAGCCGGGACAAGCTGCAGGCGGCGGCGGCGGCGACGGGGCCCCGGCGGGTGCTACTGCTGGTCTT
CGCCTCCTGCTTCGCCTTCGCGACGCTCCTCACCTTCCTCTACACCTCGTCCGGCTTCGCCTCCGCCGCGTCCTCCGGCT
CGCGCCTTGCCGCGGGCTCCTCGTCGGGCGCGGCGGCCGGCTCCGGGGCGGCGCTGCCGCTGCCGGTGTTCGACGCGCTG
GTCCACTACGCGTCCTTCTCCAACGCGACGCACCGGATGACGGACACGGACATCCGGGCCATCTCCGCCATCCTGCGCGC
GCGGGGGCCCTGCAACCTGCTCGTCTTCGGCCTGGGCGCCGAGTCGCCGCTCTGGCTCGCCCTCAACCACGGCGGCCGCA
CCGTGTACCTGGACGAGAACGAGTTCTACGTCAAGTACCTGGAGCCGCGCCACCCGGGGCTGGAGGCCTACGACGTCTCC
TACACCACCAAGGTGCGCGACTTCCGGGACCTGCTGGAGGCGGCCCGGGGCTCGCGCGCCGCCGAGTGCCGGCCGGTCCA
GAACCTGCTCTTCTCCGAGTGCCGGCTCGCCATCAACGACCTGCCCAACGAGCTCTACGACGTGCCCTGGGACGTGGTGC
TCATCGACGGGCCGTCCGGGTGGAACCCCAACTCCCCCGGCCGGATGGCGTCCGTCTTCACCACCGCCGTGCTCGCCCGC
TCCGGCGCCACCGCCGCCAAGGGCCCCACGGACGTGCTGGTGCACGACTTCAACTTCGAGGTGGAGCAGGTGTTGAGCAA
GGAGTTCCTGTGCGACGAGAACCGGGTCGCCGGCAGCGGCACGCCCTCGCTCGCCCACTTCGTGATCCGCTCCGGCGGCC
CCGCCGACGCCTTCTGCGCCGCCGGCCAGGACAGCCGGGCCACGCCCGAGGAGAAAACCCGCCGCAAGTAATCGAGACCC
GCACTTTGATTAATTAGCCG-CCCCCTCTCCTCTCTAATTCTTGTTATTATCATTTCTTCTTCTTCTTCCTCTTTTTTGT
GACATA--CGAGTAATATATGTTTGTTGTTTTTTTGGGAACAATAATTGTAACAAGAAAGGCTCCTTCGATCAAAAGTGT
AACCATCAATCGTGATGACATGATTGATCGCCTCGAAAAGAAAATGAAATAGTAGAGGTTAATTTACACTTAGACAGATT
GCTTGGGATTGATTCGACATGTGCTGGTGGGTGGGTGGATCCAT-----CCATCAATCGATCCGATTGCTTTTACATTTT
CCTTTG----CCCCTGCCCGGTTGCGTGCGTTG------CTCGATGAT-AAAGTGGTGGGATCATATTCATCTGCCGGTC
GTAATTTTGGTCATTAATGAG-GATGGCCTCGTTACTTTGATCTGATCTGATCAAGAAGTGTCTCGGATCGGTCGTCAGA
TCAGTAGAGTCGCTGTC----ATCGGGCTGATGCGCCCTTGGATCCGTGGAAGATGTCCGTGTTTCGCAGCAACGTCCGA
CGGCTC-----AGCGAACTGGGG-----GCGTATCCTCGGCTCGACCCTTTCTGGTATGCCAACATGGGCAACATGTGCA
GTCTACGTGGCAATGGTCATGCACCA-CCATCATGCCAGTACAAATGAGCACATGTGTGATCTCTGATACTCATCACTAG
ATAAAAGGAAAGCAGATACTCCTACCGGGACATC--------AAAACATTTTTGCCCAACTTGATTGACTGTGCTGCCCG
CCGCCGCTGCCGCGTCGTTGTCGCCGGTCGCTGACGCTGGCGCCGGCAGGTGCGTGGTGCGTACGGGGGCGGCGGTTAGT
GGTCAGCTCGGATGTGCTGCCTGTCACCGGTTTGCGCCTGTGTGCGATCGTGTGTGTCCAACAGCTCATAGGACGATCAT
AAATTGGATTTGGTT-----------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSS---------------------------------S-S------SSSSSSSS--------------
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S---------------S-----SSSSSS---------
-----------S------S-----------------------S----------------SS-S-----------------
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------S--S-------S--------------------------------------------------------------
SS--------------------S---S--S---------------S----------------S----------SS-----
-S---------------------------------------------------------------------------S--
--------SSSS--S-S-SSS---SSSS--S-SS-S-SSS----------------------------------------
-----------------------------------------------------S--------------------------
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---------SS---SSS--------SSS----------------------------------------------------
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-S------------------------------------------------------------------------------
-----------------------------------------------S-----S--------------------------
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----------------------------------------------------------------S---------------
------------------------------------------------------------------------S-------
-----------------------------------------------------------S---S----------------
--------------------------------S-----------------------------------------------
--------------------S-----------------------------------------------------------
------SS------------------------------------------------------------------------
-----------------S---------------------S-------------------------------S--------
---------S----------------------------------------------------S-S---------------
---------------------------------------------S--S--S-------------------S--------
---------------------S------S--------------------------------------------S------
-------------------S-----------------S---------------------S--------------------
-----------------------SSSSS-----------S--S--------S----------------------------
--------------------S-----S----S------S------S----------------------------------
---------------------------------------------S--S----S--------------------------
----------S---------------------------------------------------------------------
------------S-----------------S-----------S-------------S-----------------------
---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS
>forward_65
---------------------------------------------ATGACGCCGAGTTTCACTCA---------------
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>reverse_1442
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-GGTGTACCTGGACGAGAACG-----------------------------------------------------------
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>forward_972
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------------------------------------------------------------------------CACGCCGA
TTGATTCTCCCA--------------------------------------------------------------------
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>reverse_3019
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----------------------------------------------------------AGAAGGAGCGTTGGTACAGC--
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