>input_sequence_64635
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-ATGGACCAGGAGGTCAAGGAGTCAAAGCCCTCCGGCGAGCCAAACCTGTTCCTGCAATGGGGCAGCCGGAAGCGGCTTC
GCTGCGTCAAGTCCCGGGAGGACGGCTCGCCGTCGCCGGCCCGGTCGGATGCGCTCAGGCGCACCATACCCCGGGTGAAT
CGGCCCCTTCTGGGAGGCAATGTCGCACAGTTTCGTTCACCACGCCGCCCGAGCACTCTTCACCGGAGGTAATTTCAGTA
TTGCATCCGTAGACCCCTTTC------CCTTTGACCCTTGCCGTGCAAAATGTCAAGAAATGTCTGACCCTGGTATTTGC
TTGCTAGCAGAAAATCCGAGGCACAGGCGAGTGAGGCCAGGCAGTCCATATCCCTCTCACCAGAGAAGGACCGGTACTAC
TCCACCAGGGGTTCCCCATTTCCCTTTGAGGGGAATGGGTTTGATTTCAGCGGCGGGGTGGAAGAGAAGGGCACCGCTGC
TCTGCCGAGGTTCTTCATCTCATTGTCGAACAAGGAGAAAGAGGAGGACTTCTTGGCAATGAAGGGCTGCAAGCTCCCAC
AGAGGCCGAAGAAGAGGCCCAAGCTGACGCAGAAATGCTTGCTTGTAATGTTCTTTTTCATCTCAGAAACTAAACTGTCA
AGTTCTTTTCTGTCAAAGACATGTTCATGCTCATTCT-TAACCCTAATGTTTTGTTGGTCGTTGTTGTGTATGGCCATAG
ACGGTGTGCCCAGGAGCTTGGCTGTCAGATCTCTCGCATGAGAGGTATGAAGTTCGAGAGAAGAAGAGCTCCAAAAAGGT
ACCCCAAATCTTTGATTCATTTCCCTATGGTTGCAA----GTAGCATACAGTGGAGCTGTTAGTTCAATCTACGTTTATC
CATGTGTTACTGATATCTCGCAAATTCAATCAGCAGAGGGCGAGGGGACTGAAGGCGCTGTGCATGGAGAGCGATTCGGA
GTAG----------------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G457400
TAAAAAATTGCTCAATTCAGCACACTGTTTATTTTGTCATGTTGTGAATAAATTTGATGACAAAATTTAAAACCCTTGCA
AACCTTATGATTTTTGTTTGAAAAACCTCGCAACTTCTGCAACCCACCAAAAGTCGTGGCAGCAGTAGTAGGAGTGGATG
ATATCTTTGGGGTTTCCCACCCCGCCCAGCTACCCCGCGCTCCGCAG-------CGCAGCGCCTCCCCCCGTT-------
--------------CCCATTCTCCCCCCAACTTCCCAGCCGCCTCTCCCCAAAAAATCCATCCCAGCGCCCAACCTCTCT
CGCCTCCGCCGCCACCGCCCGCCTCCATTCTTGCCGCCGCTCCGCCCTCCGCCGAGCCCCTCCTCACCTCCGCCGACGCC
CCTTCTCGCCGTCGCGCCTCATCGACCGTCGAGATCTGCCGCGCCACTTCCTGCGTCCGCCTGCCGTACACCGTCGAGCG
CCACCACGCCGTCCGTCGTCCAGCGCCGCGCCGCCCCATCTCCCGCGCCAGCCTCCTCGCCGCCTGCGTCGGGAACTTCC
TCCTCGTCCTCGCCGCCGGAAACCTTATCTGCTACCGCAACCGCCGCCAGGAGCTCCAACCTGCACGCCGCCTCCCCGCC
GAACTTCATCAACCCTCTGCTACCGAAGCCGCCAGGAGCCCGGCTCCTGTGCTCCACCGCGGTCTCCAGCAGGCAGCGAG
AAGGTGAACCGCCAGAAGCCCACCTCTTTC-------CCCTCTCCCT--CTCTGCCTTCCCTGAGCCCCTTCTCTGTTCT
TCACGAGGCCATGTCCGATCTGATGCATCTGTTGGGCTGGATCTGATGGATATGCCCAACAATCCTTGAAGCACTTGCT-
--ACTTTGCAACGGAAGAT-TTAGCGGTTTATCCGAAGTCGTTGGATCTACAGCTTGCCTGTCTCCTCTGCTGCTAACTC
TGTTTGGCAAAGTTCATCCCGATCTGCAGTTTATTAGGGTTTATTTACATGCTGACGGCTTCGCCGTTTTTCAGGATATA
GATGGACCAGGAGGTCAAGGAGTCAAAGCCCTCCGGCGAGCCAAACCTGTTCCTGCAATGGGGCAGCCGGAAGCGGCTTC
GCTGCGTCAAGTCCCGGGAGGACGGCTCGCCGTCGCCGGCCCGGTCGGATGCGCTCAGGCGCACCATACCCCGGGTGAAT
CGGCCCCTTCTGGGAGGCAATGTCGCACAGTTTCGTTCACCACGCCGCCCGAGCACTCTTCACCGGAGGTAATTTCAGTA
TTGCATCCGTAGACCCCTTTC------CCTTTGACCCTTGCCGTGCAAAATGTCAAGAAATGTCTGACCCTGGTATTTGC
TTGCTAGCAGAAAATCCGAGGCACAGGCGAGTGAGGCCAGGCAGTCCATATCCCTCTCACCAGAGAAGGACCGGTACTAC
TCCACCAGGGGTTCCCCATTTCCCTTTGAGGGGAATGGGTTTGATTTCAGCGGCGGGGTGGAAGAGAAGGGCACCGCTGC
TCTGCCGAGGTTCTTCATCTCATTGTCGAACAAGGAGAAAGAGGAGGACTTCTTGGCAATGAAGGGCTGCAAGCTCCCAC
AGAGGCCGAAGAAGAGGCCCAAGCTGACGCAGAAATGCTTGCTTGTAATGTTCTTTTTCATCTCAGAAACTAAACTGTCA
AGTTCTTTTCTGTCAAAGACATGTTCATGCTCATTCT-TAACCCTAATGTTTTGTTGGTCGTTGTTGTGTATGGCCATAG
ACGGTGTGCCCAGGAGCTTGGCTGTCAGATCTCTCGCATGAGAGGTATGAAGTTCGAGAGAAGAAGAGCTCCAAAAAGGT
ACCCCAAATCTTTGATTCATTTCCCTATGGTTGCAA----GTAGCATACAGTGGAGCTGTTAGTTCAATCTACGTTTATC
CATGTGTTACTGATATCTCGCAAATTCAATCAGCAGAGGGCGAGGGGACTGAAGGCGCTGTGCATGGAGAGCGATTCGGA
GTAGAGGCAGAAGCAGGATGGATTTATTTTTTGACTTCTGCTCGAGGCAGAGAAGCCGCACCTAGGTAGCAATGGCGG--
-TTCTTCTAACTAGGCAATGCTCAGCAAGCAGCTAATTTAGTGCCCGTTTCCCTTCTCCTGAT------TCTTCATCCCC
TGTTTAATCTCCATGATCCTTTCGTCTAATTGTCTGTTCATCAGAGCTCTGAAGAGATTGTTCGTCTGGAACCATGAAGC
AAAATAGTGGTAGTAGTATATTAGA---TCATCATCTCTAATCCTCTGTG--GAAAATGTTATGG---------------
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------------------------------------------------ATGTGGAATCGCCACAGTCGTTGTGGATGAGT
TGGGACCGCAATGGACAATGGCACGCCATCTACTACTCCCTCCGTTCCTAAATACACCTTCTGTTCTAAAATAGATAACT
CAACTTTGTACTAACTTTATACTAAAATTAGTATAAAGTTTGAGTCATCTATTTTGGAATGGAGGGAGTATCGGTCTTTT
TAGAGATTTCACTACAAACTACATACAGATGTATATAGATATATTCTAGAGTGTAGATTTACTTATTTTGCTCCGTATGT
AGTTCATGGTGAAATTTCTAAAAAGAATTATATTTAGGAGCAGAGGGAGTAGTATTTATGACCCCATGTCTTGGGCGTGA
TCCTGAATATCTGGCGCCCTGCTCCGTCGGCGAGGAGCATCGTTTCCATCGTAGCGTACTACTGGTGGTTGGCCTTTGAC
TC-TGTTGCTTGT----TAGCTCCGTCGGCCAGTGCTTTCAGACTATTGCTGTGGCCTGGCTTCAGAGCTGCAACTTGTT
GAACCTGCTTTCAAAAGAAATAGGAGTATATCTTGTTTAACCTAATAAACTTGAAATGAC--TGAGCATGGAACGGTTTT
CTTTGGGGAATGGTATAATTTAGCAACAACAGTCAGGTAATGGTATGACTACATTTCACTCACTCACGGATATTGCTTGC
ACAAGGATTTGTTATTTCAGCCTATAAAAAGAGATTTTTTTGAGTAGT
>chr5D_46
---------------------------------------------GAATAAATTTGGTTACAAAATTTAAAACCCTTGCA
AACCTTATGATTTTAGTTTGAAAAATCTCGCAACTTCTGTAACCCACC-AAAGTCATGGCAGCAGTGGTAGGAGTGGATG
ATATCTTTGGGGTTTCCCACCCCGCCCGGCTACCCCGCGCTCCGCAGGCCGCAGCGCAGCGCCTCCATCTTCACGCTGAC
CCCCACTCCCATTCTC------CCCCCCAACTTCCCAGCCACCTCTCCCCAAAAATTCCACCCCAGCGCCCAACCTCTCT
CGCCTCCGCCGCCACCGCCCACCTCCATTCTTGCCGCCGCTCCGCCCTCCGCCGAGCCCCTCTTCACCTCCGCCGACGCC
CCTTCTCGCCGTAGCGCCTCGTCGACCGTCGAGATCTGCCGCGACTCTTCCTGCGTCCGCCTGCCGTACACCGTCGAGCG
CCACCACGCCGTCCGCCGTCCAGCGCCGCGCTGCTCCGTCTTCTGCGCCGACCTCCTCGCCGCCTGCGTCGGGAACTTCC
TCCTCGTCCTCGCCGCCGGGAACCTTATCTGCTACCTCAACCGCCGCCAGGAGCTCCAACCTGCACGCCGCCTCCCCGCC
GAACTTCACCAACCCTCTGCTTCCTCAGCCGCCAGGAGCCCGGCTCCTGAGCTCCACCGCCGTCTCCAGCAGGCAGCGAG
AAGGTGAACCGCCAGAAGCCCACCTCTTTC-------CCATCTCCCTCACTCTGCCTTCCCTGAGCTCCTTCTCTGTTCT
TCACGAGGCCATGTCCGATCTGATGCATCTGTTGGGCTGGATCTGATGGATACGCCAAACAATCCTTGAAGCACTTGCT-
--ACTTTGCAACGGAAGAT-T-AGCGGTTTATCCGAAGTCGTTGGATCTACAGCTTGCTTATCTCCTCTGCCGCTAACTC
TGTTTGACAAAGTTCATCCCGATCTGCAGTTTATTAGGGTTTATTTACATGCTGACGGCTTTGCCGTTTTTCAGGATATA
GATGGACCAGGAGGTCAAGGAGTCAAAGCCCTCCGGCGAGCCAAACCTGTTCCTGCAATGGGGCAGCCGGAAGCGGCTCC
GATGCGTCAAGTCCCGGGAAGACGGCTCGCCGTCGCCGGCCCGGTCGGATGCGCTCAGGCGCACCATACCCCGGGTGAAT
CGCCCCCTTCTGGGAGGCGATGTCTCACAGTTTCGTTCACCACGCCGCCCAAGCACTCTTCACCGGAGGTAATTTCAGTA
TTGCATCCGTAGACCATTTTCCTTTGACCCTTG------GCCGTGCAAAATGTCAAGAAATGTCTGACCCTGGTATTTGC
TTGCGAGCAGGAAATCCGAGGCACAGGCGAGTGAGGCCAGGCAGTCCATATCCCTCTCACCAGAGAAGGACCGGTACTAC
TCCACCAGGGGTTCCACATTTCCCTTTGAGGGGAATGGGTTCGATTTCAGCGGTGGGGTGGAAGAGAAGGGCACCGCTGC
TCTGCCGAGGTTCTTCATCTCACTGTCGAACAAGGAGAAAGAGGAGGACTTCTTGGCAATGAAGGGCTGCAAGCTCCCTC
AGAGGCCGAAGAAGAGGCCCAAGCTGATGCAGAAGTGCTTGCTTGTAATGTTCCCTTTCTTCTCAGAAAATAAACTGTCA
AGTTCCTTTCTTTCAAAGATGTGTTGATGCTCATTTCCTAACCCTAATGTTTCATTGGTCGTTGTTGTGTATGACCATAG
ACGGTGTGCCCAGGAGCATGGCTGTCAGATTTGTCGCACGAGAGGTATGAAGTTAGAGAGAAGAAGAGCTCCAAAAAGGT
ACCCCAGATCTCC---TCATTTCCCTTTGATTGCAAACAAGTAACATACAC--GAGCTGTTAGTTCCATCTACATTTATC
GATGTGTTACTGATATCTCGCAAATTCAATCAGCAGAGGGCGAGGGGACTGAAGGCGCTGTGCATGGAGAGCGATTCAGA
GTAGAGGCAGAAGCAGGATGGATTCATTTTTTGACTTGTGCTCGAGGCAGAGAAGCCGCACCTAGGTAGCAACGGCGG--
-TTCTTCTAACT-GGCAATGCTCAGCAAGCAGCTAATTTAGTGCCCGTTTCCCTT---CTTAT------TCTTCACCCCC
TGTTTAATCTCCATGATCCTTTCGTCTAATTGTCTGTTCATCAGAACTCTGAAGAGATTGTTCGTCTGGAACCATGAAGC
AAAATAGTGGTAGCAATATATTAGA---TCATCATCTCTAATCCTCTGTGTGGAAAATGTTATGGCTATGCACACGATGG
TGTGCGAACGATTTGCGAACGATCATATATATCAGTCCGTCCATGCACGTGAATGAAGTGCAGTCGACGGCTGGATTCGG
CGTCGTTCCACTGTCGTGCATGGCGTGTCGTCCGCCCAGCACTTTCGGTTGTGGAATCGCCACAGTCGCTGTGGATGAAT
TGGGGT--------------------------------------------------------------------------
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---------------------------------------------------GTATTTATGGCCCCATGTCTTGGGCGTGA
TCCTGAATTTCTGGCGCCCTGCTCCGTCGGCGAGGAGCATCGTTTCCATCGTAGCGTACTACTGGTGGTTGGCCTTTGAC
TCCTGTTGCTTGT----TAGCTCCGTCGGCCTTTGCTTTCAGACTATTGCTGTGGCCTGGCTTCAGAGCTGTAGCTTGTT
AAACCTGCCTTCAAAAGAAATATC------TCTTGTTTAACCTAATAGAATTGAAATGGCGGTGAGCATGGAACAGTTTT
CGTCGGGGAATGATATAGTTTAGCAACAACAGTCAGGTAATGGCATGGCTGGATTTCACTCACTCACGGATATTACTCGC
ACAAGGATTTGGTATTTCTACCTATAAAAAGGAGA-------------
>chr5B_52
---------------------------------------------------ATTTGGTGACAAAATTTAAAACCCAGGCA
AACCTTATGATTTTTATTTGAAAAATCTCGCAACTTGTGTAACCCACC-AAAGTCGTGGT---AGTAGTAGGAGTGGATG
ATATCTTTGGGGTTTCCCACCCCGCCCGGCTACCCCGCGCTCCT------------CAGCGCCTCCATCTTCACGCTGAC
CCCCATTCCCTCTCCCCATTCTCCCCCCAACTTCCCAGCCGCCTCTCCCCAAAAAATCCACCCCAGCGCCCCACCTCTCT
CGCCTCCGCCGCCACCGCCCGCCTCCATTTTTGCCGCCGCCCCGCCCTCCGCCGAGCCCCTCTTCACCTCCGCCGACGCC
CCTTCTCGCCGTACCGCCTCATCGACCGTCGAGATCTGCCGCGCCTCTTCCTGCGTCCGCCTGCCGTACACCGTCGAGCG
CCACCACGCCGTCCGTCGTCCAGCGCCGCGCCGCCCCATCTCCTGCGCCAACCTCCTCGCCGCCTGCGTCGGGAACTTCC
TCCTCGTCCTCGCCGCCGGGAACCTTATCTGCAACCTCAACCGCCGCCAGGAGCTCCAACCTGCACGCCGCTTCCCCGCC
GAACTTCACCAACCCTCTACTACCCCAGCCGCCAGGAGCCCGGCTCCTGAGCTCCACCGCCGTCTCCAGCAGGCAGCGAG
AAGGTGAACCGCCAGAAGCCCACCTCTTCCCCCCCGTCCCCCTCTCT--CTCTGCCTTCCCTGAGCCCCTTCTCTGTTCT
TCACGAGGCCATGTCCGATCTGATGCATCTGTTGGGCTGGATCTGATGGGTATGCCCAACAATCCTTGAAGCACTTGCTA
GTACTTTGCAACAGAAGATTT-AGCGGTTTATCCGAAGTCGTTGGATCTACAGCTTGCTTATCTCCTCTGCTGCTAACTC
TGTTTCACAAAGTTCATCCCGATCTGCAGTTTATTAGGGTTTATTTACATGCTGACGGCTTCGCCGTTTTTCAGGATATA
GATGGACCAGGAGGTCAAGGAGTCGAAGCCCTCCGGCGAGCCAAACCTGTTCCTGCAATGGGGCAGCCGGAAGCGGCTTC
GCTGTGTCAAATCCCGCGAAGACGGCTCGCCGTCGCCGGCCCGGTCGGATGCGCTCAGGCGCACCATACCCCGGGTGAAT
CGCCCCCTTCTGGGAGGCGACGTGGCGCAGTTTCGTTCACCACGCCGCCCCAGCACTCTTCACCGGAGGTAATTTCAGTA
TTGCATCCGAGGACCCATTTC------CCCTTG------GCCGTGCAAAATGTCAAGAAATGTCTGACCATGGTATTTGC
TTGCGAGCAGGAAATCCGAGGCGCAGGCGAGTGAGGCCAGGCAGTCCATATCCCTCTCACCAGAGAAGGACCGGTACTAC
TCCACCAGGGGTTCCCCATTTCCCTTTGAGGGGAATGGGTTTGATTTCAGCGGTGGGGTGGAAGAGAAGGGCACCGCTGC
TCTGCCGAGGTTCTTCATCTCCTTGTCGAACAAGGAGAAAGAGGAGGACTTCTTGGCAATGAAGGGCTGCAAGCTCCCTC
AGAGGCCGAAGAAGAGGCCCAAGCTGATGCAGAAGTGCTTGCTTGTAATGTTCTGTTTCATCTCAGAAAATAACCTGTCA
AGTTCTTTTCTTTCAAAGATGTGTTGATGCTCATTTCCTAACCCTAATGTTTTGTTTGCCGTTGTTGTGTATGGCCATAG
ACGGTGTGCCCAGGAGCATGGCTGTCAGATTTGTCGCACGAGAGGTATGAAGTTAGAGAGAAGAAGAGCTCCAAGAAGGT
ACCCCAGATCTTCGACACATTTCCCTTTGGTTGCAA----GTAGCATACACTGGAGCTGTTAGTTCGATCTACCTTTGTT
GATGTGTTACTGATATCTCGCAAATTCAATCAGCAGAGGGCGAGGGGACTGAAGGCGCTGTGCATGGAGAGCGATTCGGA
GTAGAGGCAGAAGCAGGATGGATTCATTTTTTGACTTGTGCTCGAGGCAGAGAAGCCGCACCTAGGTAGCAACGGCGGCG
GTTCTTCTAACTAGGCAATGCTCAGCAAGCAGCTAATTTAGTGCCCGTTCCCCTTCTCCTCCTTATTCATCATCATCCCC
TGTTTAATCTCCATGATCCTTTCGTCTAATTGTCTGTTCATCAGAACTCTGAAGAGATTGTTCGTCTGGAACCATGAAGC
AAAATAGTGGTAGTAATATATTAGATCGTCATCATCTCTAATCCTCTGTGTGGAAAATGTTATGG---------------
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------------------------------------------------TTCTGGAATCGCCAGAGTCGCTGTGGATGAAT
TGGGAT--------------------------------------------------------------------------
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---------------------------------------------------GTATTTATGGCCCCATGTCTTGGGCGTGA
TCCTGAATTTCTGGCGCCCTGCTCCGTCGGCGAGGAGCATCGTTTCCATCGTAGCGTACTACTGGCGGTTGGCCTTTGAC
TC-TGTTGCTTGTTAGCTAGCTCCGTCGCCCAGTGCTTTCAGACTATTGCTGTGGCCTGGCTTCAGAGCTGTAACTTGTT
AAACCTGCCTTCAAAAGAAATA----------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S-----------------------
-------------------------S-------------S--------S-------------------------------
---------------------------S--------------------------------------SS-SSSS-------
------------------------------------------------------------S-------------------
--------------------------------------------------------------S-----------------
------------S--------------------------------S----------------------------------
-------------------------------------------S------S-----------------------------
-------------------S----------------S-------------------------------------------
--------S---------------SS-----------------------S----------S-------------------
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---------------------S------------------------------------S-S-------------------
------S-------------------------------------------------------------------------
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-------------------S------------------------------------------------------------
--S---------------S-------------------------------S-----------------------------
----------------S------------S---SSSSSS-----------------------------------------
----S-----S---------------------------------------------------------------------
-----------------------------------------------------S--------------------------
------------------------------------------------------------------------------S-
---------------------------S------S-------------------S--------------S----------
-----------S-------SS----S---------SS-------------------------------------------
-----------------S------------S-S-----S---------------S-------------------------
------S-----S--S----------S-----------------------S---------------S------S------
S-------------------------------------------------------------------------------
------------------------S------------S----------------------------------S-------
------------------------------------------------------------S-------------------
---------------------------------------------S----------------------------------
---------------S----------------------------------------------------------------
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------------------------------------------------S-------------------S---------S-
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S-------------------
--------S-----------------------------------------------------------------------
-----------------------------------------------------------------------S--------
S-------S-------------SSSSSSSS-----------------S-S--------S---------------S-----
-S-S--------S----S-------------------------S---S--SS----------------------S--S--
-----------S------SS-----------SSSSSSSSSSSSSSSSS
>forward_665
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-----TCATCAACCCTCTGCTACCG-------------------------------------------------------
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>reverse_2500
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-------------------GGCACGCCATCTACTACTCC-----------------------------------------
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