>input_sequence_64588
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---------------------------------------------------------------ATGGAGTTCACCGCAAT
CCGGGCCTCCGCGGCGGCCGCTGGTGGCTGCTCTTCGCCGCCGCCTGCGGCGGATCATAAGGCCGAGGAGGAGGCGGCGG
GGCCGGTGGAGAAGGAGCACATGTTCGACAAGGTCGTGACCCCGAGCGACGTGGGCAAGCTGAACCGGCTGGTGATCCCG
AAGCAGCACGCGGAGAAGTACTTCCCGCTCGACGCCTCCTCCACCGACAAGGGCCTCCTGCTCAGCTTCGAGGACCGCGC
CGGCAAGCCGTGGCGCTTCCGCTACTCCTACTGGAACAGCAGCCAGAGCTACGTCATGACCAAGGGCTGGAGCCGCTTCG
TCAAGGAGAAGCGCCTCGACGCCGGGGACACCGTCTCCTTCGGCCGCGGCGTCGGGGAGGCCGCCAGGGGGAGGCTCTTC
ATCGACTGGCGCCGCCGCCCCGACGTCGTCCTGCCGCCTGGGCACCACCGAGGCTTTGCCCTCCCCTCTGTGCCCTTCTC
GCCGTGGATGGCTCACCCGGCCGGACCCGGCGGCGCTGGCGGCAGGATGTTCCTCCAGGCGACTACGCCGGCGACCGTCT
ACGATTACGACGCCTACCAGCACAACCACCAGCGGCGACACATCGGATACGACGGGTACGGGGCGGCGCCCGGCAGGCAG
GTCGTGTACTACCAGCCGCAGCAGCACTACCACCACCAGCACCAGTCGCTGGTCCTGGAGTCGGTGCCGGTGCGCATG--
----GCGGCAGCGCCAGGGCACCCGGAGCCGTCCGCGGTGGCGACGTCGGGGTCGAAGCGGGTGCGGCTCTTCGGGGTGA
ACCTCGAGTGCGCGGCGGACGCCGAGGAGGACTTCAGCGGGCACGGGAGAACGGCGACAACGGCGCTGCAGCTGCTGTCA
CCGGCCTCCTCCTCATCGTCGTCGTCCGGGAAAGCGAGGTGCTCTTTGAATCTTGACTTGTGA-----------------
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>chr5A_1_TraesCS5A01G516600
ACCATATACTTTATAATTTTTTAGTCAAATACATGGTCAAATTGAGCCCAAAATCCAATAGCCCTAACAAACCAGGACGA
ATGTAGTACACAACCCATTTTTATAAACTAGTAATTATATGAGCATAAGATACAGTTGTTCTGATACCTACCAATAAGCA
TGCATGTTGAAAAATCTGATCCAACAACTGGCATTTTGGGGCTCATCATCTGCCTAACTCGCATAAAGGCTCTCCCTATA
GCATGACAAGGACAAGCTCACATGAGCTCAACCAGATAATCAATGGGCCCCACCCTAGCTAGCTATC------------T
AGCAGCTAGCTAGCTCCTCTCACACCCCATCCTCCTTCCTCTCCTTTAAAAAGCAAGCTACTTGTATTGTGCCCACTCTT
TCCCCCACCCCTCCATCATACAGTACATTGCGCACACAACTACACACGTATACGTACACATACATACACACTACTACACT
ACACACACTAGCTAAGCAAGCTAGGACAATTACCTTCGTTTGCAAGCCAAAAGCAAGCATCCATCCATCCAGAGCCAGCA
GCCTCATCTCCATTTCTCCTCCTCTCCTCCCCTTCCTCCGGCCTCTCTCTCACCAAGAACCTTCATAGTACCCACCCCCC
ACCCTTCACATCCACCCTTCTTCCTCCTCCCCATCCTCTTCTTGCTCGATCTCATGCCTGGATCCTGCAAGAAACCCAAG
CTCTAGCAGGCAGATCGAGCTGTTCCCC-CCTTCGTAGCTACTTCCACAGGTTCCTGCTTTG---CCAATCGGCCAAGAA
TTCTAAATTCCAATCTCCCAAGCTAGCCAAATATTATAAGCCCACCCAAATCCTATACTTATAAACAACAGTAACAGCAC
AGCACTGGGAGTGGGAGAAGGGGAGCACCAGCT----AGCTAGCTGCCGGTCAAAGGTCAAGGAGAAGGAGCAAGCAGGC
AAGGGGAGGGAAGGGAGGAAGGAGGCA---TCTACCTAACCTACCTCTCTTCAATCGGTGCACATGGAGTTCACCGCAAT
CCGGGCCTCCGCGGCGGCCGCTGGTGGCTGCTCTTCGCCGCCGCCTGCGGCGGATCATAAGGCCGAGGAGGAGGCGGCGG
GGCCGGTGGAGAAGGAGCACATGTTCGACAAGGTCGTGACCCCGAGCGACGTGGGCAAGCTGAACCGGCTGGTGATCCCG
AAGCAGCACGCGGAGAAGTACTTCCCGCTCGACGCCTCCTCCACCGACAAGGGCCTCCTGCTCAGCTTCGAGGACCGCGC
CGGCAAGCCGTGGCGCTTCCGCTACTCCTACTGGAACAGCAGCCAGAGCTACGTCATGACCAAGGGCTGGAGCCGCTTCG
TCAAGGAGAAGCGCCTCGACGCCGGGGACACCGTCTCCTTCGGCCGCGGCGTCGGGGAGGCCGCCAGGGGGAGGCTCTTC
ATCGACTGGCGCCGCCGCCCCGACGTCGTCCTGCCGCCTGGGCACCACCGAGGCTTTGCCCTCCCCTCTGTGCCCTTCTC
GCCGTGGATGGCTCACCCGGCCGGACCCGGCGGCGCTGGCGGCAGGATGTTCCTCCAGGCGACTACGCCGGCGACCGTCT
ACGATTACGACGCCTACCAGCACAACCACCAGCGGCGACACATCGGATACGACGGGTACGGGGCGGCGCCCGGCAGGCAG
GTCGTGTACTACCAGCCGCAGCAGCACTACCACCACCAGCACCAGTCGCTGGTCCTGGAGTCGGTGCCGGTGCGCATG--
----GCGGCAGCGCCAGGGCACCCGGAGCCGTCCGCGGTGGCGACGTCGGGGTCGAAGCGGGTGCGGCTCTTCGGGGTGA
ACCTCGAGTGCGCGGCGGACGCCGAGGAGGACTTCAGCGGGCACGGGAGAACGGCGACAACGGCGCTGCAGCTGCTGTCA
CCGGCCTCCTCCTCATCGTCGTCGTCCGGGAAAGCGAGGTGCTCTTTGAATCTTGACTTGTGAAGCGCTAAGA-GTGGGC
GGTCGTACGATCCACTACTAGTACCACTACTGCTACTCAGATTCTGACACAAACGGGGTCGCCGCCGGCCGTTCGCAAAG
GAGAAATTAACCTGTCGGCCGGAGAAGTAAACAAATGCGGCGGCGGCGGCGGG---CGGTGCATGCGTGGAGCATCTAGC
CTCTTCGTAATCTCTTCCTTTGGTATATAGCTCATGATCTCTCCTTAATTATTATTAGCCAGTGCAGTGCGGTGTGAGAA
GAAACACGAAAAGAACAATTTAAG------CAGCAGCAACAACAACAAATC-TTCTATCTTGATTGATGCATGGTTTCTT
GCTAGTATCTTTTATTTGCTCTGATTTGCATTCCTTCCCCAATTTCCCCTTGTGTGCTCGAGTATAATTAAG--------
--ATGATCTCTCGTTCTTTTCATTTGGGGACTTAAATAGAGGATAATTAT--TGTAGGAAGAGAAAATTGTATCTATACA
--ATGAGTCCATGACCGAGCCTAGGAAACATAGTGTGCTCCCCACATATGATAACAATAAATATTCACCCTTATACAAAT
ACAATACATGCAAGTATCTTGGAGGTGGGATGCAATGTTTAATTAACAAATTGATTATGCTGTAATTGTGCACATGGATT
GTTCTTG-TTGCTGCTGCTCTAGTGTGGGCATATGCAGGTCAATTGGGCTCTCCTTCCAAAGCTACCTAGCTGTAGGGTG
AGGAGAGGTTGCCTTTAAAATGTAGCTTAGCAGCAAGCAAGCCAGTATGCCAGCCAGCCTTGTAGCTTGCTTGCTAGGAC
AGGCAGTCATGGCAGAGGCCTGGAGGTCAGACCCTAAATCCTTCTCCTACACATGCCTGCCTGCCTGCAAT---------
------TTGCATACATTCATACACATGCATCTATCCCTCTCTCTCTC--TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTACGTATCTTTCTCTCCTCCGCTCATA------CTCTCTCTCTCCACAGTAGTACTATAGC
>chrUn_117
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------------------------------------ATATGAGCATAAAATACAGTTGTTTTGATACCTACCAATAAGCA
TGCATGTTGAAAAATCTGATCCAACAACTGGCATTTTGGGGCTCATCGTCTGCCTAACTCGCATAAAGGCTCTCCCTATA
GCATGACAAGGACAAGCTCACATGAGCTCAACCAGATAATCAATGGGCCCCACCCTAGCTAGCTAGC------------T
AG--------------CTCTCACACCCCATCCTCCTTCCTCTCCTTTAAAAAGCAAGCTACTTGTATTGTGCCCACTCTT
TCCCCCACCCCTCCATCATACAGTACATTGCACACAC----------GTCTACGTACACATACATACACACT---ACACT
ACACACACTAGCTAAGCAAGCTAGGACAATTACCTTTGGTTGCAAGCCAAAAGCAAGCATCCATCCATCCAGAGCCAGCA
GCCTCATCTCCATTTCTCCTCCTC--CTCCCCTTCCTCCGGCCTCTC----ATCAAGAACCTTCATAGTACCCACCCCTC
ACCCTTCACACCCACCCTTCTTCCTCCTCCCCATCCTCTTCTTGCTCGATCTCATGCCTGGATCCTGCAAGAAACCCAAG
CTCCAGCAGGCAGATCGAGCTGTTCCCC-CCTTCCTAGCCAGGTT------TTCCTGCTAGG---CCAGTCGGCCGAGAA
TTCTAAATTCCAGTCTCCCAAGCTAGCCAAATATTATAAGCCCACCCAAATCCTATACTTATAAACAACAGTAACATCAC
AGCACTGGGAGTGGGAGAAGGGGAGCACCAGCTCGCTAGCTAGCTGCCGGTCAAAGGTCAAGGAGAAGGAGCAAG---GC
AAGGGGAGGGAAGGGAGGAAGGAGGCG---TCTACCTAACCTACCTCTCCTCCATCGGTGCACATGGAGTTCACCGCAAT
CAGGCCCTCCACGGCGGCCGCTGGTGGCTGCTCTT---CGCCGCCTCCGGCAGATCATAAGGCCGAGGAGGAGGCGGCGG
GGGCGGTGGAGAAGGAGCACATGTTCGACAAGGTCGTGACCCCGAGCGACGTGGGCAAGCTGAACCGGCTGGTGATCCCG
AAGCAGCACGCGGAGAAGTACTTCCCGCTCGACGCCTCCTCCACCGACAAGGGCCTCCTGCTCAGCTTCGAGGACCGCGC
CGGCAAGCCGTGGCGCTTCCGCTACTCCTACTGGAACAGCAGCCAGAGCTACGTCATGACCAAGGGCTGGAGCCGCTTCG
TCAAGGAGAAGCGCCTCGACGCCGGGGACACCGTCTCCTTCGGCCGCGGCGTCGGGGAGGCCGCCAGGGGCAGGCTCTTC
ATCGACTGGCGCCGCCGCCCCGACGTCGTCCTCCC---------------------------------------------
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>chr4B_122
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-----------------------------------------AGCATAAAATACAGCTGTTTTGACACCTACCAATAAGCA
TGCATGTTGAAAAATCTGATCCAACAACTGGCATTTTGGGGCTCATCATCTGCCTAACTCGCATAACGGCTCTCCCTATA
GCATGACAAGGACAAGCTCACATGAGCTCAACCAGATAATCAATGGGCCCCACCCTAGCTAGCTAGCAAGCTAGCTCTCT
AG--------------CTCTCACACCCCATCCTCCTTCCTCTCCTTTAAAAAGCAAGCTACATGTATTGTGCCCACTCTT
TCCCCCACCCCTCCATCATACAGTACATTGCACACACAACTACACACGTATACGTACACATACATACATAC----ACACT
ACACACACTAGCTAAGCAAGCTAGGACAATTACCTTTGGTTGCAAGCCAAAAGCAAGCATCCATCCATCCAGAGCCAGCA
GCCTCATCTCCATTTCTCCCCCTC--CTCCCCTTCCTCCGGCCTCTC----ACCAAGAACCTTCATAGTACCCACCCCCC
ACCCTTCACATCCACCCTTCTTCCTCCTTCGCTTCCTCT------------TCTTGCCTGGACCCTGCAAGAAACCCAAG
CTCTAGCAGGCAGATCGAGCTGTTCCCCTCCTTCCTAGCCAGTTCCACAGGTTCTCCTGCCTATTCCAGTCGGCCGAGAA
TTCTAAATTCCAATCCCCCAAGCTAGCCAAATATTTTAAGCCCACCCAAATCCTATACTTATAAACAACAGTAACAGCAC
AGCACTGGGAGTGGGAGAAGGGGAGCACCAGCTCGCTAGCTAGCTGCCGGTCAAAGGTCAAGGAGAAGGAGCAAGCAGGC
AAGGGGAGGGAAGGGAGGAAGGAGGCATCATCTACCTAACCTACCTCTCCTCCATCGGTGCGCATGGAGTTCACCGCAAT
CAGGGCCTCCACCGCGGCCGCTGCCGGATGCTCTTCGCCGCCGCCTACGGCGGATCATAAGGCCGAGGAGGAGGCGGCGG
GGGCGGTGGAGAAGGAGCACATGTTCGACAAGGTCGTGACCCCGAGCGACGTGGGCAAGCTGAACCGGCTGGTGATCCCG
AAGCAGCACGCGGAGAAGTACTTCCCGCTCGACACCTCCTCCACCGACAAGGGCCTCCTGCTCAGCTTCGAGGACCGCGC
CGGCAAGCCGTGGCGCTTCCGCTACTCCTACTGGAACAGCAGCCAGAGCTACGTCATGACCAAGGGCTGGAGCCGCTTCG
TCAAGGAGAAGCGCCTCGACGCCGGGGACACCGTCTCCTTCGGCCGCGGCGTCGGGGAGGCCGCCAGGGGCAGGCTCTTC
ATCGACTGGCGCCGCCGCCCCGACGTCGTCCTCCCACCCGGGCACCACCGGGGCTTTGCTCTCCCCTCTGTGCCCTTCTC
GCCGTGGATGGCGCACCCGGCCGGACCCGGCGGCGCTGGCGGCAGGATGTTCCTCCAGGCGACTTCCCCGGCGACCCTCT
ACGACTACGACGCCTACCAACACCACCACCAGCGGCGACACATCGGGTACGACGGGTACGGGGCGGCGCCCGGCAGGCAG
GTGGTGTACTACCAGCCGCAGCAGCAATACCACCACCAGCACCCGTCGCTGGTCCTGGAGTCGGTGCCGGTGCGCATGAG
CATGGCGGCAGCGCCAGCGCACCCGGAGCCGTCCGCCGTGGCGACGTCGGGGTCGAAGCGGGTGCGGCTCTTCGGGGTGA
ACCTCGAGTGCGCGGCGGACGCCGAGGAGGACTTCAGCGGGCCCGGGAGAACGGCGACAACGGCGCTGCAGCTGCTGTCA
CCGGCCTCCTCCTCATCGTCGTCGTCCGGGAAAGCGAGGTGCTCTTTGAATCTTGACTTGTGAAGCGCTAAAGTGTGGGC
GTTCGCACGATCCACTACTACTACCACTACTGCTACTCAGATTCTGACACAAACGGGGTCGCCGCCGGCCGTTCGCAAAG
GAGAAATTAACCTGTCGATCGGAGAAGTAAACAAATGCGGCGGAGGCGGCGGCCGCCGGTGCATGCGTGGAGCATCTAGC
CTCTTCGTAATCTCTTCCTTTGGTATATAGCTCATGATCCCTCCTTAATTATTAGCCAGTT---CAGTGCAGTGTGAGAA
GAAACACGAAAAGAACAATTTAAGCAGCGGCAGCAGCAACAACAAAAAATCTTTCTATCTTGATTGATGCATGGTTTCTT
C-----------TATTTGCTCTGATTTGCATTCCTTCCACAATTTCCCCTTGTGTGCTTGATTATAATTAAGTTTTCTTA
GCATGAACTCTCGTTCTTTTCATTTGGGGACTTAAATACAGGGAAATTATTGTGTAGAAAGAGAAAATTGTATCTATATA
GCATGAGCCCATGACCGAGCCTAGGAGACATAGTGTGCTCCCCACATAAGATAACAATTAATATGCACCGTTATACACAT
ACAATACATGCAAGTATCTTGGAGGTTGGATGCAATGTTCAATTAACAAATTGATTGTGCTGTAATTGTGCACATGGATT
GTTCTTG-TTGCTGCTGCTCTAGTGTGGGCATATGCAGGTCAATTGGGCTCTCCTTCCAAAGCTACCTAGCTGTAGGGTG
AGGAGAGGTTGCCTTTAAAATGTAGCTTAGCAGCAAGCAAGCCAGTATGCCAGCCAGCCTTGTAGCTTGCTTGCTAGGAC
AGGCAGTCATGGCAGAGGCCTGGAGGTCAGACCCTAAATCCTTCTCCTACACATGCCTGCCTGCCTGCCTGCCTGCCTGC
CTGCAATTACATACATTCATACACATCCATCTCTCCCTCTCTCTCTACGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTC----------------------CTCTGCTCATATATACTCTCTCTCTCTCCACAGTAGTACTATAGC
>chrUn_1368
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------------------------------CCGTCTCCTTCGGCCGCGGCGTCGGGGAGGCCGCCAGGGGCAGGCTCTTC
ATCGACTGGCGCCGCCGCCCCGACGTCGTCCTCCCGCCCGGGCACCACCGAGGCTTTGCTCTCCCCTCTGTGCCCTTCTC
GCCGTGGATGGCGCATCCGGCCGGACCCGGCGGCGCTGGCGGCAGGATGTTCCTCCAGGCGACTACGCCGGCGACCGTCT
ACGACTACGACGCCTACCAGCACCACCACCAGCGGCGACACATCGGGTACGACGGCTACGGGGCGGCACCCGGCAGGCAG
GTGCTGTTCTACCAGCCGCAGCAGCACTACCACCACCAGCACCAGTCGCTGGTCCTGGAGTCGGTGCCGGTGCGCATG--
----GTCGCCGCGCCAGAGCACCCGGAGGCGTCCGCGGTGGCGACGTCGGGGTCGAAGCGGGTGCGGCTCTTCGGGGTGA
ATCTCGAGTGCGCGGCGGACGCCGAGGAGGACTTCAGCGGGCCCGGGAGAACGGCGACAACGGCGCTGCAACTGCTGTCA
CCGGCCTCCTCCTCATCGTCGTCGTCCGGGAAAGCGAGGTGCTCTTTGAATCTTGACTTGTGAAGCGCTAAAGTGTGGGC
GGTCGCACGATCCACTACTACCACCACTACTGCTACTCAGATTCTGACACAAACGGGGTCGCCGCCGGCCGTTCGCAAAG
AAGAAATTAACCTGTCGATCGGAGAAGTAAACAAATGCGGCGGCGGCGGCGGCCGCCGGTGCATGCGTGGAGCATCTAGC
CTCTTCGTAATCTCTTCCTTTGGTATATAGCTCATGATCCCTCCTTAATTATTAGCCAGTT---CAGTGCAGTGTGAGAA
GAAACACGAAAAGAACAATTTAAGCAGCAGCAGCAGCAACAACAAAAAATCTTTCTATCTTGATTGATGCATGGTTTCTT
C-----------TATTTGCTCTGATTTGCATTCCTTCCCCAATTTCCCCTCGTGTGCTTGATTATAATTAAGTTGTCTTA
GCATGAACTCTCGTTCTTTTCATTTGGGGACTTAAACACAGGAAAATTATT--GTAGGAAGAGAAAACTATATGTATATA
TCATGAGCCCATGACCGAGCCTAGGAGACATAGTGTGCTCCCCACATATGATAACAATTAATATGCACCGTTGTACAAAT
ACAATACATGCAAGTATCTTGGAGGTGGGATGCAAAGCTTAATTAATAAATTAATTGTGCTGTAATTGTGCACATGGATT
GTTCTTGTTTGCTGCTGCTCTAGTGTGGGCATATGCAGGTCAATTGGGCTCTCCTTCCAAAGCTAGCTAGCTGTAGG-TG
AGGAGAGGTTGCCTTTAAAATGTAGCTTAGCAGCAAGCAAGCCAGTATGCCAGCCAGCCTTGTAGCTTGCTTGCTAGGAC
AGACAGTCATGGCAGAGGCCTGGAGCTCAGACCCTAAATCCTTCTCCTACACATGCCTGCCTGCCTGCCTGCCTGCAATT
ACATAC-----TACATTCATACACATGCATCTCTCCCTCTCTCTCTC--TACGTATC-----------------------
-----------------TCTCTCTCTCCTCCGCTCATA------CTCTCTCTCTC-----------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S-----------S-------------------
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-----------------------------------------------------------------S--------------
--SSSSSSSSSSSSSS----------------------------------------------------------------
-------------------------------S----------------------------------------SSS-----
------------------------------------S-S-----------------------------------------
------------------------SS---------------------SSSS-----------------------------
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----------------------------------S----S-S-----------------SS-------S------S----
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-------------------------------------------------S--S---------------------------
-S--------S-----------------------------------S---------------------------------
--S-----------------------------------------------------------------------------
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----------------------------------------------------------------------S---------
--------------------------------S-----S--------------------S--------------------
------------S-------------------------------------------------------------------
----S------------------S----------------------S---------------------------------
--S-----------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
------------------------------------------S-------------------------------------
-----------------------------------------------------------------------SS-------
-----S--------------S-----------------------------------------------------------
-----------------SS---------------------------------S---------------------------
---------------------------------------S--------------SSSSSSSSSS------S---------
---------------------------------------------S----------------------------------
SSSSSSSSSSSS----------------------------------------------S--S------------------
------S-------------------------------S----S----------------------------------S-
-------S------------------S-------------------------------S-----S----S----------
--------------------------------------------------------S-----------------------
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--------------------------------------------------------------------SSS---------
--------S-----------------------S-----------------------------------------------
-----SSSSSSSSSSSS---S---------------------------------------------------
>forward_80
------------------------------------------------------------GCCCTAACAAACCAGGACGA
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>reverse_1431
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----------------------------------------------------------------------GAGGCTCTTC
ATCGACTGGC----------------------------------------------------------------------
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>forward_789
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-------------------------------------------------ACAGGTTCCTGCTTTGCCAA-----------
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>reverse_2488
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-------TCCATGACCGAGCCTAGGAA-----------------------------------------------------
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