>input_sequence_64575
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---------------------------------------------------ATGCTCGTCCTGAACAGCCCGTCGTCGCG
GAGGCTCATGTGCCGCGTCACCGACCTGTTCACGGCCGCCGGGTACAGCCTGGCCAACGCCTGCAACGGCTTCCTCCTCT
TCGCGCCGCGCATCCACGACTGGCCCCTTTTCGTCTGCAACCCCGTCACCGGCGAGAAGCTGCTTCTCTCGGAGGCGCCC
TCGGTCCAACACGAGGTCAGCTACGCCCTGGGGTTCAGC-----------------------------------------
-----------------CCT-TCCACCCGCCGGTACAAGCTCTTCCGCCTCTCCTTCCCGCCCAATGGCTGTT---ACAT
GGACGTGCGCACCTTAGGCGGCAGTGGCGACCAGCTGTGGCGCAGGTACCCGGACCCGCTCCAATGTCGAGCAGTCTCAG
CACCGTCTCCGGCGCTCGTAGGCGGCAAGATCTACTTAACATGTGGCGAGGGGATATTGGTGATGGACGTGGCAACCGAG
GCGCACTGCACCTACCCCCTCCCCATGCACGAGGGGGAGAAGCTCGCCTTCGAGCTGCGCGGCCGGCTGTGCGTCGCGGT
GCACGTCGTCGCCCAATGCAAGCTCTT-CTTCTGGGTATTGCATCTCGACCAAGACAAGAAGGATGGTACA---CCCTTG
CTTGACTGGGAACTACGCTACACCTTCCACATGGTCCATGGCGGCGACAACAATGACGGTGAAGACCAGCCGAGGGGCGC
TGGATTCGACGACCGTAACGGGATGCTATGCTACAGGATGAGTGACCGTCTTCACAGGTACAACACCACCGAGA---ACG
ACCATCATCATAAGGTTGGTGCTTTGTTGGAATGGAACAACATAAGCCAACTGCCCAACAAAGATTGGTGGAACGTCTAT
GGCGGTTACCGTCCCACCCTAGTCTCGCCACGTTCCCTCCTTGTTGACCCCCTTGCTGAGCACCGCCACAAAGAATTTGA
GGACTCTCTGTTAGCTGCTTTGCGTGATCCATAA----------------------------------------------
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>chr4B_1_TraesCS4B01G034200
TGGATCTGCCCCTATCTTTCTTTTATAGTGGTAGTAGATGAACGCACACACACCCTACCCCTATGAGCATCTCTGAAAGA
CTGAGCCGAAATATCATTTTGAGATTTACTAAGTCACCGTAGGCACCTCGTCGTCGACGGAAATGTCTCCTCCCACTGAA
TGTGCATCGCCGGAAATCCTAAAATAAATTAAGGAATAAATGCGAGCACCAGGATTTGAACCCTGATGGGTTAGGATACC
TGCATGCTCATCAAAAAATGTAGCACGTGGGCGCGAAGATTGGAGTATTAGGGCATGATGTGTGCTGGGTGAAGACGGCG
GAGGTCGTCATGACATGAGTACCTTGCCGTGTGATCCGACCTGTTTGCATGGAATTGAAGAGAGGATGGAGATTAATCGA
AAGATTAATAAAAGAATTAATAATGAAATATGGGCCTACGAGCAGACGTGGAATGCATTGATTGGGCCTGCCCCGTAATA
GGTGCGGTGAACCCTGCACCTGAAGCGAGAAGCGGCGGCAGCGAATTTTTGGAGGGGAAAGAGAGACGTGATTTACGGGA
TTTGTTGCAACAGCGCACCTGTAGTCTACTCTAGTCTAGACTAGAAAAAAGTTCCCACGATGGT----AAATCACACGGC
GTCCCAAAAAAATCGTACCGACTCGGTTTGGTTCCGGAAAGGCCGGCCACGATTGAGTCATCAGGTATATACTACTTTGT
ATATATATGCGATGCGACCATGACGTTCACGATCGAGTCGTCTTCCTTCCTTCGATTGGAAAGA-------ACCGATCAT
GTCTTCGATCTCAGAAGAGAAATCGATCGTGCGGAAGATCCTTGCGAAGCTGCCGACGAGGGACGTCGCCCGCTGCCGCT
GCGTCTGCCGACGGTGGCGCCGCATAGTCGCCGACCCCTCCTTCCGCGCCCTCCACGGCTCCGTCGGCGGCGGCGACGTG
CAAGCAGAGACTTTGCTCGTGTACGAGATCCGCTTGAGTGCCACCGTTGACATGCTCGTCCTGAACAGCCCGTCGTCGCG
GAGGCTCATGTGCCGCGTCACCGACCTGTTCACGGCCGCCGGGTACAGCCTGGCCAACGCCTGCAACGGCTTCCTCCTCT
TCGCGCCGCGCATCCACGACTGGCCCCTTTTCGTCTGCAACCCCGTCACCGGCGAGAAGCTGCTTCTCTCGGAGGCGCCC
TCGGTCCAACACGAGGTCAGCTACGCCCTGGGGTTCAGC-----------------------------------------
-----------------CCT-TCCACCCGCCGGTACAAGCTCTTCCGCCTCTCCTTCCCGCCCAATGGCTGTT---ACAT
GGACGTGCGCACCTTAGGCGGCAGTGGCGACCAGCTGTGGCGCAGGTACCCGGACCCGCTCCAATGTCGAGCAGTCTCAG
CACCGTCTCCGGCGCTCGTAGGCGGCAAGATCTACTTAACATGTGGCGAGGGGATATTGGTGATGGACGTGGCAACCGAG
GCGCACTGCACCTACCCCCTCCCCATGCACGAGGGGGAGAAGCTCGCCTTCGAGCTGCGCGGCCGGCTGTGCGTCGCGGT
GCACGTCGTCGCCCAATGCAAGCTCTT-CTTCTGGGTATTGCATCTCGACCAAGACAAGAAGGATGGTACA---CCCTTG
CTTGACTGGGAACTACGCTACACCTTCCACATGGTCCATGGCGGCGACAACAATGACGGTGAAGACCAGCCGAGGGGCGC
TGGATTCGACGACCGTAACGGGATGCTATGCTACAGGATGAGTGACCGTCTTCACAGGTACAACACCACCGAGA---ACG
ACCATCATCATAAGGTTGGTGCTTTGTTGGAATGGAACAACATAAGCCAACTGCCCAACAAAGATTGGTGGAACGTCTAT
GGCGGTTACCGTCCCACCCTAGTCTCGCCACGTTCCCTCCTTGTTGACCCCCTTGCTGAGCACCGCCACAAAGAATTTGA
GGACTCTCTGTTAGCTGCTTTGCGTGATCCATAAGTTTATTGTATCCACAATAAGTATTTATGTTTCTTGAACAGCATGG
TTTGTATTGGGAAAACTCTTCTAATTACCTGGCGGATCACGTTGTTTCATCCGCCACTTCCCACACATGACGCGTGTCCC
CTATGGGGCCGCCCACGGCTCCTCTAATTTTATCAATGTTTCTCCTTCACTCGTCTCGTTTCCCGTCTCTTCCATTTTCT
TGTCTCATTCTTCATGCGGCTAAAAGGAAATGAGCCAGCTACCAG-CTGCTACGTGCCCGCCGAGCAGGCGCTTGAAGCC
GTCAGACTTCATCACCTGCTCAGCGAGGCACGCCGCCCTGGAGCCGCGTCCGCCACCGCCTGCTGTTCCACGACGCCGCT
GTCTTGGAGGAGCACCGGTGTCCATGGCTGCCACCTCCTCAAGCTCGGCCGCAACCGTC-----------AGCAACAGTT
CCTGCAACATAATCTTTGTTACAGGAAAATCTAAAATATTTCTGCAACAAGACCTTTGTTGCAAAAGTTTCGGCAACATC
GTCCATGTTTCTGAAACGCGGGGAAAGTTACAGCGAAAACACGATGATACAGCGATGGGAGCGTGCCGATTTTTCTGCAA
CATAAACTCTGT-TGCAAAAG-TTTCTAAAACATAACTAGTGTTTAAAAAGTTTTCTGAAACATAACTCGTAGTATAAAC
TTTTTCGCAAAGTATTCTCTGTCGCAAAAGTGTCTGCAACTTAAACTTTGTTGCAAAGGTGGAGAGCGCCGCTTGGT-AC
TTGATGATGCAGATCGCGGACGCGTAGCATTGCCAAAAAAATAAAATCTGCAACATTAGCTCTGTTGTAAAAAAAAAT--
-CTAGAATAAAACCCCT-TCGCAAAAGTTCTACAACAGTTCTACAACTCAAATTATGTTGCAAACATCCAAAACGCAACA
TCATTCTTGTTGCAAAAGCTAGGAACTGGATCTGAGGGCTATCCTGTGTTGAATCGAGTGGTTTGCGAGGCGGCGGATCT
TTTAAAAAGATCC
>chr4A_592
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-------------------------------TAATCTAGACTAGAAAAAAGATCCCACGATGGTAAGTAAATCACACGGC
GTCCCAATAAAATCGTACCGAGTCGGTTAGGTTCCGGAAAGGCCGGCCACGATTGAGT----------------------
ATATATATGCGATGCGACGATGACGTTCAGGATCGAATCGTCTTCCTTCCTTGGATTGGAAATTGGAAAGTACCGACCAT
GTCTTCGATCTCAGAAGAGAAATCGATCGTGCGGAACATCCTTGCGAAGCTGCCGACGAGGGACGTCGCCCGCTGCCGCT
GCGTCTGCCGACGGTGGCGCCGCATAGTCGCCGACCCCTCCTTCCGCGCCCTCCACGGCTCCGTCGGCGGTGGCGACGTG
CAAGCACAGACTTTGCTCGTGTACAG------------------------------------------------------
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------------GAGGTCAGCTACGCCCTGGGGTTTGGTTGTATCGGTTGATTGCTTTGGAATACAAAGCG-GGGGAAAT
CCTTTTTCGTCGTTCAGCCC-TCCACCCGCCGGTACAAGCTCTTCCGCCTCTCCTTCCCGCCCAATGGCTGTTGCTACAT
GGACGTGCGCACCTTAGGCGGCGGCGGCGACCAGCTGTGGCGCAGGTTCCTGGACCCGCTCCAATGTCGAGCGGTCTCGG
CACCGTCTCCGGCGCTCGTAGACAGCAAGATCTACTTAACATGTGGCGAGGGGATATTGACGATGGACGTGGCAACCGAG
GCGCATTGCACCTACCCCCTCCCCATGTACGAGGGGGAGAAGCTCGCCTTCGAGCTGCGCGGCCGGCTGTGCGTCGCGGT
GCACGTCATCGCCCAGCGCATGCTCTACCTTTTGGGTATTGCATCTCGACCAAGACAAGAAGGATGGCACGGCGCCCTTG
CTTGACTGGGAACTACGCTACACCTTCCACATGGTCCACGGCGGCGACGACAATGACGGTGAAGACCAGCCGAGCGGCGC
TGGATTCAACGACCGTGACGGGGTGCTATGCTACAGGATGAGTGACCGTCTCTACAGGTACAACACCACCTAGAACGACG
ACCATCATCATAAGGTTGCTGCTTTGTTGGAATGGGACAAGATAACCCAACTGCCCAACAAAGATTGGTGGAACATCTAT
GGCGGTTACCGTCCCACCCTAGTCTCGCCACGTACCCTCCTTGTCGACCCCCTTGCTGAGCACCGCCACAAAGAATTTCA
GGACTCTCTGTTAGCTGCTTTGCGTCATCCATAAATTCGTTGTAT-----------------------------------
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>chr2A_592
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-------------------------------TAATCTAGACTAGAAAAAAGATCCCACGATGGTAAGTAAATCACACGGC
GTCCCAATAAAATCGTACCGAGTCGGTTAGGTTCCGGAAAGGCCGGCCACGATTGAGT----------------------
ATATATATGCGATGCGACGATGACGTTCAGGATCGAATCGTCTTCCTTCCTTGGATTGGAAATTGGAAAGTACCGACCAT
GTCTTCGATCTCAGAAGAGAAATCGATCGTGCGGAACATCCTTGCGAAGCTGCCGACGAGGGACGTCGCCCGCTGCCGCT
GCGTCTGTCGACGGTGGCGCCGCATAGTCACCGACCCCTCCTTCCGCGCCCTCCACGGCTCCGTCGGCGGTGGCGACGTG
CAAGCACAGACTTTGCTCGTGTACGAGATCCGCTTGAGTGCCACCGTTGACATGCTTGTCCTCAACAGCCCGTCGTCGCG
GAGGCTCATGTGCCGCGTCACCGACCTGTTCACGGCCGCCGGGTACAGCCCGGCCAACGCCTGCAACGGCTTCCTCCTCT
TCGCGCCGCGCATCCACGACTGGCCCCTTTGCGTCTGCAACCCCGTCACCGGCGAGAAGCTGCTTCTCTCGGAGGCGCCC
TCGGTCCAACACGAGGTCAGCTACGCCCTGGGGTTTGGTTGTATCGGTTGGTTGCTTTGAAATACAAAGCGAGGGGAAAC
CCTTTTTCATCGTTCAGCCCTTCCATCCGCCGGTACAACCTCTTCCGCCTCTCCTTCCCGCCCGATGGCTGTTGCTACAT
---------------------------CGACCAGCTGTGGCGCAGGTACCCGGACCCGCTCCAATGTCGAGCGGTCTCGG
CACCGTCTCCGGCGCTCGTAGACGGCAAGATCTACTTAACATGTGGCGAGGGGATATTGGTGATGGACATGGCAACCGAG
GCGCACTGCACCTACCCCCTCCCCGTGTACGAGGGGGAGAAGCTCGCCTTCGAGCTGCGCGGCCGGCTGTGTATCGCGGT
GCACGTCATCGCCCAGCGCAAGCTCTA-CTTTTGGGTATTGCATCTCGACCAAGACAAGAAGGATGGCACGGCGCCCTTG
CTTGACTGGGAACTACGCTACACCTTCCACATGGTCCACGGCGGCGACGACAATGACGGTGAAGACCAGCCGAGCGGCGC
TGGATTCAACGACCGTGACCGGGTGCTATGCTACAGGATGAGTGACCGTCTCTACAGGTACAACACCACCCAGAACGACG
ACCGTCATCGTAAGGTTGGTGCTTTGTTGGAATGGGACAAGATAATCCAACTGCCCAACAAAGATTGGTGGAACGTCTAT
GGCGGTTACCGTCCCACCCTAGTCTTGCCACGTACCCTCCTTGTCGACCCCCTTGCTGAGCACCGCCACAAAGAATTTCA
GGACTCTCTGTTAGCTGCTTTGCGTCATCCATAAATTCGTTGTATTCATGATACGTACTTT-------------------
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>chr4D_2001
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TTTATAATGGGAA-ACTCTTCTAATCATCCGGCGGATCACGTCATTTTGCCTGTCACTTCCCACGCACGACGTGTGTCCC
CTATGGGGCCACCCACAGCTCCTCTCATTTTACCAATGTTTCTCCTTCACTCGTCTTGTTTCTCGTCTCTTCCGTTCTCT
TGTCTCATTCTTCACGCGCCTAAGAGGAAAGAAGCCAGCCACTGGATTGCCATGTGCCCGCTGCACATGCGCTAGAAGCC
ATCATACTTCATCACCTACTCAATGAGGCACGCCGCCCTGGAGCTGCGTCCGCCGTCGCCTGCTATTCCACGACGCCGCT
GTCCTTGAGGAGCACCGACGTCCATGGCTGCCGCCTCCTCAAGCTTAGCCGCAGCCGTCGGTGCCCCCGTAGCAACAGTT
CCTGCAACATTTTCTTTGTTGCAAGAGAATCTAT----------------------------AAATGTTCCGGCAACATC
GTCCATGTTTCCGAAACATGGCGAATGTTACAGGCAAAACACGATGATGCAGCGATGCGAGTGCAGCGATTTTTCTGCAA
CATGAACTCTGTGTGCAAAAG-TTTCTGAAACATAACTTCTGTTACAAAAGTTTTCTGAAACATAACTCCTGATATAATC
TTTTTCGCAACGTGATCTTTGTTGCAAAAGTTTCTGCAACTTAAACTTTGTTGCAAAGGTGGACAACGCTGGTCGGCCAC
TTGATGATGCAGATCGTGGACGTGTAGCACTGCCCAAA----AAAATCTGCAACATTAGCTCTGTAGC--AAAAAAAT--
-CTACAACAAAACCTTTGTCACAAAAGTTCCGCAACTCGAGCTCTC-------------GCAAACATCCAAAACACAACA
TCATCCTTGTTGCAAAAGCTAGGAGCTTGATCTGAGGGTTATCCCGCGTTGAATCCAGTGGTTCGCGAGGCGGCAGATCT
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>chr5B_2009
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--------GGGAA-ACTCTTCTAATCACCCGACGGATCATGTCGTTTCATCCGCCACTTCCCACGCATGACGCGTGTCCC
CTATGGG-CCGCCCACAGCTCCTCTAGTTTTACCAATGTTTCTCCTCCACTTGTCTTGTTTCCCGTCTCTTCCATTTTCG
TATCTCATTCTTCACGCGGCTAAGAGGAAAGGAGCCAGCTACTGAACTGCTACGTGGCCGCCGCGCAGGCGCTAGAAGCC
GTCAGACTTCATCACCTGCTCAGTGAGGCACGTCGCCCCGGAGCCGCTTCCGTCGCTGCCTGTTGTTCCAGGACGTCGCT
GTCCTAGAGGAGCACCGGTGTCCATGGCTACCGCCTTCTCAAGCTCAGCCACAACCGTC-----------AGCAACAGTT
CCTGCAACACGATCTTTGTTGCAGGAAAATCTACAGTATTTCTGCAATTAGACCTTTCTTGCAAAAGTTTCAACAACATC
ATTCATGTTTCTGAAACATGGGAAATGTTACAGCGAAAACACGATGATGC-GCGATGCAAGTGCAGCGATTTTTCTGCAA
TATGAACTCTAT-TGCAAAAGTTTTCTGAAACATAACTTCTATTGCAAAAGCTTTCTGCAACATAACTCCTGGAATAAAC
TTTTTCGCAAAGTGATCTTTGTCATAAAAGTTTCTGCAACTTAAACTTTGTTATAAAGGTGTAGAGCGCCGCTCGGT-AC
TTGACGATGCAGATCGCGGATGCGTAGCACTGCCCAAAA---AAAGTATGCAACATTATCTCTGTTGC--AAAAAAAAAA
ACTAGAGCAAAACCTCTGTCGTAAAAGTTCTACAAC--------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-----------------S----------------------------
-------S-------------S------S-----------------------------SSSSSSSSSSSSSSSSSSSSSS
------------------S----------S------S---------------S---------SS------------S---
------------------------------------S-------------------------------------------
----------------------------------------------------------------------S---------
------S-------------------------------------------------S-----S-----------------
--------------------------------------------------S-----------------------------
------------------------------S-------------------------------------------------
-----------------------------------SS-S-----------------------------------------
-------------------S------------------------------------------------------------
----------------------S-S-----------------------------------------------S-----S-
---------------------S----------------------------------------------------------
---------------------------S----------------------------------------------------
-------S-------SS---------S----S-----------------------------------S--S---------
--------------------------------------S---------S-------------------------S-----
-------S--------S-----S----------------------------SS-----------------S---------
-----------------------------------S----S----S----------------------------------
---------------------------------S----------S---------------------------------S-
-------------------------S--------S--SS------S--SS---S---S--SSSSSSSSSSSSSSSSSSSS
---S--S------S-----------S---S------------S---------------------S---------------
----------------S---------------S-----------------------S-----------------------
--------------S--------S------S-----------SS-------------------S---------S------
-----------------------S------------------------------S-------------------------
---S-S--------------------------S-------------S---------------------------------
----------S---------S------------S-S-----------SS--------S----------------------
-----------------SS------S----------------------S--------S---S-SSS--------------
---S-----------------------S----------SS----SS-----------------------S-S--------
-------------SS---S------------S-----------------------------------------S------
-----------------------------S----S----SSS-------------------------SSS----------
-------S------S---------------------SSSSSSS-SSSSSSSSSSSSSSS---------------S-----
----S-------------------S--S----------S-----S-S--------S-------S----------S-----
SSSSSSSSSSSSS
>forward_574
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--------------------------------------------------------------------------ACGGGA
TTTGTTGCAACAGC------------------------------------------------------------------
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>reverse_1671
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----------------------------------------------------------------------ACCCTTGCTT
GACTGGGAAC----------------------------------------------------------------------
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>forward_750
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----------GATGCGACCATGACGTTCAC--------------------------------------------------
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>reverse_2110
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-----------------------------TGGCGGATCACGTTGTTTCA-------------------------------
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