>input_sequence_64563
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------------------------------------------ATGCCAAAGGACAGGAGCTCCCGTTCAGTCTCGCACGA
GGGCTGCCGATCTCGTGTCTCCCCATACAAGTTGCGGAGTGGTTCTCGCAGGTCAGAGGAAGCCGCTGCTGCCACCGCTG
CTGCAGCAGCAAAGCAGGCTGCAGAATGGGAGGAGGTTCGCTGTCCTGTGTGCATGGATCACCCTCATAATGCTGTTATG
CTTGTCTGCTCGTCACATGAGAAAGGTTGCCGCCCTTTCATTTGCGACACAAGCTACAGACACTCCAATTGCCTTGATCA
GTACCGCAAAGCCTCCAAGGAGTCCTCTAAGGATTCAGGGGCAGCAGAATGCGCTGAGTGCCAGCAGCCAGTTAAACTGG
CATGTCCATTATGCCGTGGGCCGGTCAGCCATTGGACTAAGGATTATGATGCACGGAAGTTCATGAATTCTAAGGATCGA
GCATGCACCATGGAGTCATGTGAGTTCAAGGGTGCATACAACCAGTTGAGGAAGCACGCAAGGGAGGATCATCCTGCTGT
ACGACCAACGGAGGTGGACCCCAATCGACAGCGAGACTGGCATAGGATGGAGCAGCAGCGTGATCTTGGGGATTTGTTCA
GCATGCTGCGTTCGGGGATCAGTGGCAGAGAAGATGGGGTTGGAGTCGGTGAAGGTGACGAGGGCGTCAGTGAGAGATCT
TTGCACGCCACGTCCATAACGATGGTCTTCATTGTGCGGTCAGGCAGGTCCATCCTACACTACACAGACGGGGAAATCCC
AGGTCGTCGATCAAGAACAATTCTTCTAGTTGGGGAGCCTCGTGGTGAAGCCTCCCGAGCAGGAGGATCAAGCGGCAATG
GTGATGCTGAGGCCACTACAACCGACAATGAGGAAACGGACCTGGCAATGTCAACACAGGCATCTGCTGGTTCTCAGGAA
GATGCTGGAGAAGCCGGTGGCGATCCTGCGCAGTGA--------------------------------------------
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>chr3A_1_TraesCS3A01G219400
GACGTGGTGGAG-CCCCTGGGCATCCGTCGCGAGGGTGCGAGCGAGCGAGCCTTAGCCAACCACGTCACTGTCCACGTCA
GACGCCCCACCTATAAAGACGTAGCAAAGCCGACCCGCCCATCACACTCTCGTTTCCTTCTCCTTTCCTTTCCCTTCCCC
TCCTCCCCTACCTTAGCGTCTCCTCGCCGCTACCCTCCTAGGTCTCGGCGCCGCCGCCGACGCCGCCGAGGGTCTCCGGC
GGCCACGGACGCGGTTCGCTGTTACCCCTGACTGTTCGGCACGGTAAAACTTCCTCCCTCTCCCGCTTCCGCTCACCGTC
GCAGCTCGATCTCGCCGGCGCCGATCTGGCCCGCTCCGCCGTTGACCCCGCCCGATTCGGCTGCCTCTCGTGCCGGAACT
TGCGGACCATGTCTCTT-GCGGGTTCTGTGGGAGAATTTGTTCGGCGCGTTCGCTTTTCGAGCGGATCGATGGAGGGCAG
TGGTCTGCCGCTGTATTTTGGTTTGTCTGCGTTGTTTGGGCCGGATTGTTGATGGCGTTCCTAGATGTAGTCCTCCAACT
ACCCTGTGAACCAACACTTCTGCCGTGCCTGTGCACGATTGCTAAAAAATGTCCTGATTTTTAGGCGATTTGACTTGTAA
AGTTTGTCTGGTTTCGTAGGGAGGTGTTCATTTCCAGACGGGGGTTAAGTTTATTTTGTTTCGTATATCAGGGATGGTTT
TAGTGCCAGACTTGTGAATTGCTTGTCCGTGAAGATTAAATCGCCTTCTTGTTCATAACAGTGTAATCCCTTGTTGTATA
TATATGTAGCCTGCTAGAATATGCTGCTTGCGACCTGATTAAACTCTTGCTTTGTTGCTGTTATTCTCTTTCAGAATTTG
AAGTTGGATATAAGAAATCAACCTAGCGTCTGTCTTGTTCTCTGTGTAGCGCTTTCCTTTGGATTGCAGAGAATTTTCAA
ACAAACCAACAGCAACTTGCATCTGACTGACTTGAGGTAACTATGCCAAAGGACAGGAGCTCCCGTTCAGTCTCGCACGA
GGGCTGCCGATCTCGTGTCTCCCCATACAAGTTGCGGAGTGGTTCTCGCAGGTCAGAGGAAGCCGCTGCTGCCACCGCTG
CTGCAGCAGCAAAGCAGGCTGCAGAATGGGAGGAGGTTCGCTGTCCTGTGTGCATGGATCACCCTCATAATGCTGTTATG
CTTGTCTGCTCGTCACATGAGAAAGGTTGCCGCCCTTTCATTTGCGACACAAGCTACAGACACTCCAATTGCCTTGATCA
GTACCGCAAAGCCTCCAAGGAGTCCTCTAAGGATTCAGGGGCAGCAGAATGCGCTGAGTGCCAGCAGCCAGTTAAACTGG
CATGTCCATTATGCCGTGGGCCGGTCAGCCATTGGACTAAGGATTATGATGCACGGAAGTTCATGAATTCTAAGGATCGA
GCATGCACCATGGAGTCATGTGAGTTCAAGGGTGCATACAACCAGTTGAGGAAGCACGCAAGGGAGGATCATCCTGCTGT
ACGACCAACGGAGGTGGACCCCAATCGACAGCGAGACTGGCATAGGATGGAGCAGCAGCGTGATCTTGGGGATTTGTTCA
GCATGCTGCGTTCGGGGATCAGTGGCAGAGAAGATGGGGTTGGAGTCGGTGAAGGTGACGAGGGCGTCAGTGAGAGATCT
TTGCACGCCACGTCCATAACGATGGTCTTCATTGTGCGGTCAGGCAGGTCCATCCTACACTACACAGACGGGGAAATCCC
AGGTCGTCGATCAAGAACAATTCTTCTAGTTGGGGAGCCTCGTGGTGAAGCCTCCCGAGCAGGAGGATCAAGCGGCAATG
GTGATGCTGAGGCCACTACAACCGACAATGAGGAAACGGACCTGGCAATGTCAACACAGGCATCTGCTGGTTCTCAGGAA
GATGCTGGAGAAGCCGGTGGCGATCCTGCGCAGTGATGCTGCCTAAGGTCAGCTCCCTTGCTCTCTTGGACTGAAAAGCC
TAGCAGCAAGCCATTTATCGTGGTTTGCCGGGAGTCGGGCGCATGTTGGGAAGAAACATCCGTGCCAGCTTGTCTCAGGC
GTAGTCAGGACATTCTGCCTACAAGCAAGCAAGAAGAAATCAGG-------------GGGGCTAAGTAGTGTCGTTTACA
TCCTGCTGGAATCTGTCGGCAAACATAAACATTTAATGGTGGCGTTGTATTATTGGAACATGTCCCATGTTTGGTACTCC
GGTGAATCGCTTCGCTGCGTTGTAATTCTCTCTAGCTCTTCTGCTGAATTCCATTTCGCTGCATT---GTAATTGCATCT
GAGTAGATCTTTTCTGCATTTGAAGAATTTGTTGTATAGCGTTCAGGTTTCTAGTTCCACTTATGCCTGGAGGAACCTGA
GAAATCGGAATATGGTCGATGACAGTGAATGAAATGCTCCTTAGTTCAGACACGTGAGATGTTTTGGATATTTTATAATA
TGAACTATATTCGGACTGACTGAAATCAATGGACATGCTAAAACGTGTCTACGTACATCTGATTCAGAAAAAACTAG---
------------------------------TAGAACATCTAATACAGTATTTGTGAAAAAGCTAGTAGAATATCTAATAC
AGTATTTGTGAACGGGGCTGCAGCGTGATGGAAACCCACATAAG----------------------------TCGAATTC
TTAGCCATCAGTTACTTACATGGGTAAATTAGATATAATTAATTTACAGTTGGTAAATTAAAGACCATCATGGTTGATAT
TA-TAATGAACTTTGCAAAATTAATAAAAATTTCAAGAAGTTGATTCGGAATCATTAGTGTGAATTTCAAATTACTTAAT
ATGACATATTGTGCAGAGTATATCCCGTAACACTAGGGAGTATAACATCCACTCGTCCTCCTAATGTCGTGTGTCATGAC
TTGATGCTTCATTTTGAATTTTGCAAAGGTTAATCGATTCTTTATTTGCAAGAAATAAGATCTCAATTACAAAT
>chr3B_1
GACGTGATGGAGCCCCCTGGGCATCCGTCGCGAGGGTGCGAGCGAGC----CTTAGCCAACCACGTCACTGTCCACGTCA
GACGCCCCACCTATAAAGACGTAGCAAAGCCGACCCGCCCATCACACTCTCGTTTCCTTCTCCTTTCCTTTCCCTTCCCC
TCCTCCCCTACCTTAGCGTCTCCTCGCCGCTACCCTCTTAGGTCTCGGCGCCGCCGCCGACGCCGCCGAGGGTCTCCGGC
GGCCACGGACGCGGTTCGCTGTTACCCCTGACTGTCCGGCACGGTAAAACTTCCTCCCTCTCCCGCTTCCGCTCACCGTC
GCAGCTCGATCTCGCCGGCGCCGATCTGGGCCGCTCCGCCGTTGACCCCGCTCGATTCGGCTGCCTCTCGTGCCGGAACT
TGCGGACTATGTCTCTACGCGCGTTCTGTGGGAGAATTTGTTCGACGCGTTCGCTTTTCGAGCGGATCGATGGAGGGCAG
TAGTCTGCCGCTGTATTTTGGTTTGTATGCGTTGTTTGGGCCGGATTGTTGATGGCCTTCCTAGATGTAGTCCTCCAACT
ACGCTCTGAACCAACACTTCTGCCATGCCTGTGCACGATCGCTAAAAAATGTCCTGATTTTTAGGCGATTTCACTTGTAA
AGTTTGTCTGGTTTCGAAGGGAGGTGTTCATTTCCAGACGGG--TTAAGTTTATTTTGTTTCGTATATCAGGGATGGTTT
TAGTGCCAGACTTGTGAATTGCTTGTGTGTGAAGATTAATTCGCCTTCCTG-TCATAACAGTGTAATCCCTTGTTGTATA
TATATGTAGCCTGCTAGAATATGCTGCTTGCGACCTGATTAAACTCTTGCTTTTTTGCTGTTATTCTCTTTCAGAATTTG
AAGTTGGATATAAGAAATCAACCTAGCGTCTGTCTTGTTCTCTGTGTAGCGCTTTCCTTTGGATTGCAGAGAATTTTCAA
ACAAACCAACAACAACTTGCATCTGACTGACTTGAGGTAACTATGCCAAAGGACAGGAGCTCCCGTTCAGTCTCGCATGA
GGGCTGCCGATCTCGTGTCTCGCCATACAAGTTGCGGAGTGGTTCTCGCAGGTCAGAGGAGGCTGCTGCTGCCGCCGCTG
CTGCAGCAGCAAAGCAGGCTGCCGAATGGGAGGAAGTTCGCTGTCCTGTGTGCATGGATCACCCTCATAATGCTGTTATG
CTTGTCTGCTCGTCACATGAGAAAGGCTGCCGCCCTTTCATTTGCGACACAAGCTACAGACACTCCAATTGCCTCGATCA
GTACCGCAAAGCCTCCAAGGAGTCCTCTAAGGATTCAGGGGCAGCAGAATGCGCTGAGTGCCAGCAGCCAGTTAAACTGG
CATGTCCATTATGCCGTGGGCCAGTCAGCCATTGGACCAAGGATTATGATGCACGGAAGTTCATGAATTCTAAGGATCGA
GCATGCACCATGGAGTCATGTGAGTTCAAGGGTGCATACAACCAGTTGAGGAAGCACGCTAGGGAGGATCATCCTGCGGT
ACGACCAACGGAGGTGGACCCCAATCGACAGCGAGACTGGCATAGGATGGAGCAGCAGCGTGATCTTGGGGATTTGTTCA
GCATGCTGCGTTCGGGGATCAGTGGCAGAGAAGATGGGGTTGGAGTCAGTGAAGGTGACGAGGGCGTCAGTGAGAGATCC
TTGCACGCCACGTCCATAACGATGGTCTTCATTGTGCGGTCAGGCAGGTCCATCCTACACTACACAGACGGGGAAATCCC
AGGTCGTCGATCAAGAACAATTCTTCTAGTTGGGGAGCCTCGTGGTGAAGCCTCCCGAGGAGGAGGATCAAGCGGCAATG
GTGATGCTGAGGCCACTACTACCGACAATGAGGAAACTGACCTGGCAATGTCAACACAGGCATCTGCTGGTTCTCAGGAA
GATGCTGGAGAAGCTGATGGCGATCCTGCGCAGTGATGCTGCCTAAGGTTAGCTCCCTTGCTCTCTTGGACTGAAAAGCC
TAGCAGCAAGCCATTTATCGTGGTTTGCCGGGAGTCGGGTGCATATTGGGAAGAAACATCCGTGCCAGCTTGTCTCAGGT
GTAGTCAGGACATTCTGCCTACAAGCAAGCAAGAAGAAATCACGGGGGGAACGTGGTGGAGCTGAGTAGTGTCGTTTACA
TCCTGCTGGAATCTGTCGGCAAACATAAACATTTAATGGTGGCGTTGTATTATTGGAACATGTCCCATGTTTGGTACTCC
GGTGAATCGTTTCGCTGCGTTGTAATTCTCTCTAGCTCTTCTGCTGAATTCCATTTCGCTGCCTTGTA---ATTGCATCT
GAATAGATCTTTTCTGCATTTGAAGAATTTGTTGTATAGCGTTTAGGTTTCTAGTTCCACTTATGCCTGGAGGAACCTGA
GAAATCGGAATATGGTCGATGACAGTGAATGAAATGCTCCTTCGTTCAGACACGTGAGATGTTTTGGATATCTTATAATA
TGAACTATATTCGGACTGACTGAAATCAATGAACATACTAAAACGTGTCTACATACATCTGATTCAAAAAAAGCTAGAAC
ATCTGATGATACATCTGATTCAGAAAAAGCTAGAACATCTAATA------------------------------------
-----TTGTGAACGGGGCTGCAGCGTGATGGAAACCCACTTAAGATAGTTGTAGCCATCGAGAGGGAGTGCCTCGAATTC
TTAGCCATCAGTTACTTACATGGGTAAATAAGATATAATTAATTTACAGTCGGAAAATTAAAGACCATCATTGTTGATTA
TACTAATGGACTTTACAAAATTAATGAAAATTTCAAGAAGTTGACTTGAAATCATTAGTGTGAATTTCAAATTACTTAGT
ACGACATATTGTGGAGAGTATATCCCGTAACACTAGGGAGTATAACATCCACTCATTCTCCTAATGTCGTGTGTCATGAC
TTGATGCTTCATTTTGAATTTTGCAAAGGTTAATCGATTATTTATTTGCAAGAAATAAGATCTCAATTACAAAT
>chr3D_1
GACGTGGTGGAGCCCCCTGGGCATCCGTCGCGAGGGTGCGAGCGAGC----CTTAGCCAACCACGTCACTGTCCACGTCA
GACGCCCCACCTATAAAGACGTAGCAAAGCCGACCCGCCCATCACACTCTCGTTTCCTTCTCCTTTCCTTTCCCTTCCCC
TCCTCCCC-ACCTTAGCGTCTCCTCGCCGCTACCCTCCTAGGTCTCGGCGCCGCCGCCGACGCCGCCGAGGGTCTCCGGC
GACCACGGACGCGGTTCGCTGTTACCCCTGACTGTCCGGCACGGTAAAACTTCCTCCCTCTCCCGCTTCCGCTCACCGTC
GCAGCTCGA---------------TCTGGCCCGCTCCGCCGTTGACCCCGCCCGATTCGGCTGCCTCTCGTGCCGGAACT
TGCGGACCATGTCTCTTCGTGCGTTCTGTGGGAGAATTTGTTCGACGCGTTCGATTTTCGAGCGGATCGATGCAGGGCAG
TGGTCTG-CGCTGTATTTTGGTTTGTCTGCGTCGTTTGGGCCGGATTGTTGATGGCGTTCCTAGATGTAGTCCTCCAACT
ACGCTCTGAACCAACACTTCTGCCATGCCTGTGCACGATCGCTAAAAAATGTCCTGATTTTTAGGCGATTTGACTTGTAA
AGTTTGTCTGGTTTCGTAGGGAGGTGTTCATTTCCAGACGGG--TTAAGGTTATTTTGTTTCGTATACCAGGGACGGTTT
TAGTGCCAGACGTGTGAATTGCTTGTCTGTGAAGATTAAATCGCCTTCTTGTTCATAACAGTGTAATCCC---TTGTATA
TATATGTAGCCTGCTAGAATATGCTGCTCGCGACCTGATTAAACTCTTGCTTTTTTGCTGTTATTCTCTTTCAGAATTTG
AAGTTGGATATAAGAAATCAACCTAGCGTCTGTCTTGTTCTCTGTGTAGCGCTTTCCTTTGGATTGCAGAGAATTTTCAA
ACAAACCAACAACAACTTGCATCTGACTGACTTGAGGTAACTATGCCAAAGGACAGGAGCTCCCGTTCAGTCTCGCACGA
GGGCTGCCGATCTCGTGTCTCCCCATACAAGTTGCGGAGTGGTTCTCGCAGGTCAGAGGAGGCTGCTGCCGCCGCCGCCG
CTGCAGCAGCAAAGCAGGCTGCAGAATGGGAGGAGGTTCGCTGTCCTGTGTGCATGGATCACCCTCATAATGCTGTTATG
CTTGTCTGCTCGTCACATGAGAAAGGCTGCCGCCCTTTCATTTGCGACACAAGCTACAGACACTCCAATTGCCTTGATCA
GTACCGTAAAGCCTCCAAGGAGTCCTCTAAGGATTCAGGGGCAGCAGAATGTGCTGAGTGCCAGCAGCCAGTTAAACTCG
CATGTCCATTATGTCGTGGGCCGGTCAGCCATTGGACCAAGGATTATGATGCACGGAAGTTCATGAATTCTAAGGATCGA
GCATGCACCATGGAGTCATGTGAGTTCAAGGGTGCATACAACCAGTTGAGGAAGCACGCTAGGGAGGATCATCCTGCTGT
CCGACCAATGGAGGTGGACCCCAATCGACAGCGAGACTGGCATAGGATGGAGCAGCAGCGTGATCTTGGGGATTTGTTCA
GCATGCTGCGTTCGGGGATCAGTGGCAGAGAAGATGGGGTTGGAGTCAGTGAAGGTGACGAGGGCGTCAGTGAGAGATCC
TTGCACGCCACGTCCATAACGATGGTCTTCATTGTGCGGTCAGGCAGGTCCATCCTACACTACACAGACGGGGAAATCCC
AGGTCGTCGATCAAGGACAATTCTTCTAGTTGGGGAGCCTCGTGGTGAAGCCTCCCGAGCAGGAGGATCAAGCGGCAATG
GTGATGCTGAGGCCACTACTACCGACAATGAGGAAACTGACCTGGCAATGTCAACACAGGCATCTGCTGGTTCTCAGGAA
GATGCTGGAGAAGCCGATGGCGATCCTGTGCAGTGATGCTGCCTAAGGTTAGCTCCCTTGCTCTCATGGACTGAAAAGCC
TAGCAGCAAGCCATTTATCGTGGTTTGCCGGGAGTCGGGTGCATGTTGGGAAGAAACATCCGTGCCAGCTTGTCTCAGGC
GTAGTCAGGACATTCTGCCTACAAGCAAGCAAGAAGAAATCACGGAGGGAACGTGGTGGAGCTGAGTAGTGTCGTTTACA
TCCTGCTGGAATCTGTCGGCAAACATAAACATTTAATGGTGGCGTTGTATTATTGGAACATGTCCCATGTTTGGTACTCC
GGTGAGTCGTTTCCCTGCGTTGTAATTCTCTCTAGCTCTTCTGCTGAATTCCATTTCGCTGCCTTGTAGTAATTGCATCT
GAGTAGATCCTTTCTGCATTTGAAGAATTTGTTGTATAGCGTTCAGGTTTCTAGTTCCACTTATGCCTGGAGGAACCTGA
GAAATCGGAATATGGTCGATGACAGTGAATGGAATGCTCCTTCGTTCAGACACGTGAGATGTTTTGGATATTTTGTAATA
TGAACTATATTCGAACTGACTGAAATCAATGAACATACTAAAACGTGTCTACATACATCTGATTCAGCAAAAGC------
------------------------------TAGAACATCTAACACAGTACT-----------------------------
-GTATTTGTGAACGGGGCTGCAGCGTGA---------------------------------GAGGGAGTGCCTCGAATTC
TTAGCCATCAGTTACTTACATGGGTAAATAAGATATAATTAATTTAGGGTCGGTAAATTAAAGACCAT----GTTGATAT
TA-TGATAAACTTTACAAAATTAATGAAAATTTCAAGAAGTTGACTTGAAATCATCCGTGTGAATTTCAAATTACTT---
-TGACATATTGTGGAGAG---ATCCCGTAACACTAGGGAGTATAACATCCACTCATCCTCCTAATGTCGTGTGTCATGAT
TTGATGCTTCATTTTGAATTTTGCAAAGGTTAATCAATTATTTATTTGCAGGAAATAAGATCTCAATTACAAAT
>SNPs
-----------------------------------------------SSSS-----------------------------
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-----------------------------------S--------------------------------------------
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---------------------S----------------------S-----------------------------------
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--S--S------------------S--------------S----------------------------------------
------------------------------------------SS------------------------------------
---------------------------S----------------------------------------------------
-----------------------------------------------------S--------------------------
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-----------S--------------------------------------------------------------------
------------------------------------------------------------S--S---------S------
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--------------------------S-----------------------------------------------------
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-------------------------------------S------------------------------------------
-----------------------------------------------------------S--------------------
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-----------------------------------------------S-------------------------------S
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-------------------S-----------------S------------------------------------------
----------------S--------------------------------S------------------------------
---------------------------------------S----------------------------------------
------------------------------------------S----------------S---S----------------
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---------S----------------------------------------------------S-----------------
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------------------------------------------S-------------------------------------
-------------------------------S----S---------------S-------------------S-------
-------------------------------------------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S--------------------------------------S----------------------------------------
-----------------------------S--------------------S--------------------S--------
--------------S----------S------------------S-S-S-----------------------------S-
-------------S----------------------------------------S-------------------------
---------------------------------------S----------------------------------
>forward_276
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----------------CGCTGTTACCCCTGACTGTT--------------------------------------------
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>reverse_1970
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-------------------------------------------------CAGCTCCCTTGCTCTCTTGG-----------
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