>input_sequence_64556
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-ATGGCCATGGAGGAGGCGACAGCGACGG------CGTTTGGCTTCCCGGCGGAGGTGCGGCCGGGGGCCACGCGGGTGG
GGTGGGTCGGCATCGGCGTCATGGGCGGCGCCATGGCCGCGCGCCTCCTCGCCGCCGGGTACGCGGTGACGGCCTACGCG
CGCACGCCGGCCAAGGCGGGGGGCCTGGTCGCCGCCGGAGCGCGCCTCGCGGACTCGCCGGCCTCCGTGGCCGCGGCCTC
CGACGTGGTCTTCACCATGGTCGGCAACCCCGGCGACGTCCGCGCCGTCGTCCTGGACGCAGCCTCGGGCGCCCTCGCGG
GGCTCCGCCCCGGCGGCGTGCTCGTGGACTGCACCAGCTCCTCCCCCTCCCTCGCGCGCGAGGTCGCCGCGGCCGCGCGC
GCCGCCGGCTGCCACGCCGTGGACTGCCCCGTCTCCGGCGGCGACGTCGGCGCGCGCGACGGCACGCTCGCCCTCCTCGC
CGGCGGGGACGAGGCCGTGGTGGCGTGGCTCGCCCCGCTCTTCGCCCACCTCGGCAGGCCGACCTACATGGGCCCGCCCG
GCAGCGGCCAGAGCAGCAAGATCGCGAACCAGATCGCGGTGGCGGGCGCGGTGGTCGGCCTCGGCGAGTCCCTGGCCTTC
GCCGGCGCCGCCGGGCTGGACGAGCGGCTGTTCCTCGGCGCGGTGTCCAAGGGCGCCGCGGGGTCGCGCGTGATGGACAT
CTTCGGCGAGCGCGCGCTGAGCCGCGACTTCACGTCCGGGGGCGCCGTGCGGTACATCATCAAGGACCTCGGCATGGCGC
TGGAGGTCGGCGACGGCC---AGGAGGAGGATGAGGTCAACGTGCTGCCAGGGTCGGCGCTGTACCGGCAGATGTTCTCG
GCCATGGCGGCGAACGGCGACGGCGAGCTGTGCCTGCAGGGACTGATCACCGTCGTCGAGCGCCTGAACGGCATCCGCAA
GTGA----------------------------------------------------------------------------
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>chr1D_1_TraesCS1D01G408400
CGGCATCGCGTGATGCACCGCTCGAAAACGACCT--GCGCGCGCGTGTTATCGTTGCCCTGTCTTCCTTGTACACGACGC
CAAGTCAAGCCGGGGAATAAAACCGGGCCGGGCGCGTCCCGCGAAAAGGACCCGCCTTTGCCTTTGCTCGCCCCATAAAT
CACGCCGCCCGGCG-AAGACCCACCCAAAAGACTTCCCAAGCACAGCCG------CCGAGATGGCCATCGCCGAGACGGC
AGCGGCGGTGGCGACGACGACGACGACGTCCGACACAGCGCCCATGTCCCCGGCCTCTGCGAAGGCCGGGGCGGCGATCG
GT---CCGGCGACGGGCGCGACGCGGCGCGGGTGGCTGCGCCGGCTCGTGCCGCGGGAGTACCTGCCCCGTAGCCGCCGG
TGGAAGACCCGCGGCGCTGGCGGCCCCGGTGCTGCTGAGGCCGCGAATGGGGGCGGCGCGGCGGGGCCGTCTTCGTACCG
GAGGCTGGCGTCGTCGCTGTCGCGGTCGTTCCGGTGGAAGCGGATGCCGGCGCTCCCGTCCCTCAGCCTGCGCGCCGGCT
CGGCGTCGGCGGCGCTGGACGAGGTGGCCTTCCGCGTCATGTACGTGGTCGAGGCCGTCGTGCTCGGCCTCGCGCTCTCC
TGCTTCTTCCTTTGCTGCGGCTGCCACATCTAGCCTGCCGCCAGCCATGTATTCTCTGTT------AC--TGTTTGTTAG
TTGCTCTCGGTTCTTTGGTTAGTAATTTTTTCGTTTTCATCGATCGTCTACTTACTCT-----GCTGTAAATTTTCCACC
GTGAGGAAAATCCATGGAAAAATTCCCAATCTGCTCAAGATGATTTCCGTCGTTTGGGGATGAACGGATGATGGATGG--
-TGTGATGCAATTTTA------------GTTTTTGGAGCCGG-GAGTTGTTTATTACAAGGTCTGTCGCTGTCTCGTGCA
AATGCTTGCACGACGACGACAAAAAAATCTAGCTTTGGTTAGTTGGGGATTGGGAGTGAAGGAGGACTGCAAGAAGAGGT
CATGGCCATGGAGGAGGCGACAGCGACGG------CGTTTGGCTTCCCGGCGGAGGTGCGGCCGGGGGCCACGCGGGTGG
GGTGGGTCGGCATCGGCGTCATGGGCGGCGCCATGGCCGCGCGCCTCCTCGCCGCCGGGTACGCGGTGACGGCCTACGCG
CGCACGCCGGCCAAGGCGGGGGGCCTGGTCGCCGCCGGAGCGCGCCTCGCGGACTCGCCGGCCTCCGTGGCCGCGGCCTC
CGACGTGGTCTTCACCATGGTCGGCAACCCCGGCGACGTCCGCGCCGTCGTCCTGGACGCAGCCTCGGGCGCCCTCGCGG
GGCTCCGCCCCGGCGGCGTGCTCGTGGACTGCACCAGCTCCTCCCCCTCCCTCGCGCGCGAGGTCGCCGCGGCCGCGCGC
GCCGCCGGCTGCCACGCCGTGGACTGCCCCGTCTCCGGCGGCGACGTCGGCGCGCGCGACGGCACGCTCGCCCTCCTCGC
CGGCGGGGACGAGGCCGTGGTGGCGTGGCTCGCCCCGCTCTTCGCCCACCTCGGCAGGCCGACCTACATGGGCCCGCCCG
GCAGCGGCCAGAGCAGCAAGATCGCGAACCAGATCGCGGTGGCGGGCGCGGTGGTCGGCCTCGGCGAGTCCCTGGCCTTC
GCCGGCGCCGCCGGGCTGGACGAGCGGCTGTTCCTCGGCGCGGTGTCCAAGGGCGCCGCGGGGTCGCGCGTGATGGACAT
CTTCGGCGAGCGCGCGCTGAGCCGCGACTTCACGTCCGGGGGCGCCGTGCGGTACATCATCAAGGACCTCGGCATGGCGC
TGGAGGTCGGCGACGGCC---AGGAGGAGGATGAGGTCAACGTGCTGCCAGGGTCGGCGCTGTACCGGCAGATGTTCTCG
GCCATGGCGGCGAACGGCGACGGCGAGCTGTGCCTGCAGGGACTGATCACCGTCGTCGAGCGCCTGAACGGCATCCGCAA
GTGAG-----------GCAGGGCAGGTGTTCGTCAAAATGCGGTAGCGGGATATGTATCTCATGGTCATGTATTATTAGA
TTT-CCTGGTCAAAATTCAATCTCTATGTCATATTTTTAACCAACGATTTGTGGATGCTATCATCGATCATACTG-----
------------TTATCATGCTTTACTCGCTGATTTGTGGATGCTATTCTTGTTTATTGTTGATGTTCACACC---AGTA
ATTCAGTTCTTTTTACCAAGTGAGGTACTCTGATGAATTACCAACCCAAGATACAGATTCATATCTGCCTTTTTACATTT
GCATCTCCAAAAGAAAACCAAGGAAGTAGCAGTGAGCAAAAATTGAGACGATGCTGCACATGGCATCTTCTATTCAGATG
A-TGGGATGTGATACTAATCTGACAGCCAAGGAGCAATTTGCAAACCTTGTAAAATTCCAAGGGCCTTTCGCCCAACCAA
CCATGTGAGATTTCCAGGTGTCTGTCAGGTATTTGCACCGTGCAAGATAGC--ATATCTACACCGGAGCCTTTCCCTGTG
CAGTGCACTGCTTCAGTCTCCTTATCTCTTTCACTCCCACAAAC--CTTCAGCAGCAAGAATGGCAGCGCCGGGCTCGCT
AGGACTTCTCCAGGCGCCGTCCTTCGCCGCGGCCAAGTGCCGTCCGGTGACGGCCACGAGCCGGGGAGCGGCACGAGCCG
TGTTCGCCGTCCGCGCCTCGGCAGCTTCTGCGGCCACCAAGGACGCAGTTCTCAGGCCCTTCCGTGAGAACAGGGCTCTC
AAGGTCTCACTCTCTCCATCTTGAGACCTTCCGTGCAGTAATAAATTTCCATTGCTTTGATGTGCTCTGATGATAGATGT
AGTAGTGTGTTATATCTGTCACTAGTTCTGATAGATGTAGTAGTGTGTTCCCTTCAGACTGGATGGATAGTGCAAGTCTA
GAAGTCATCTCTGGGTTGAAGCGTGGAGCAATAAAAATTTCATTGCTTTGGTACGATGGAATGTTGCTGCTGGGCTCTGA
C
>chr1B_1
CGGCATCGCGTGGGGCAGCGCTCGAAAACGACCGAGGCGCGCGCGTGTTATCGTTGCTCTGTCTTCCTT-----------
---GTCAAGCCGGGGAATGAAAACCGCCCGGCCGG-----GCGAAAAGGACCCGCCTTTGCTCCTGCTCGCCCCATAAAT
CACGCCGCCCCGCCCAAGACCGACCCAAAAGACTCGTCGAGCTCCCGACTACTTTCCAAGATGGCCATCGCGGAGACGGC
AGCGGTGGTG---ACGACGACGACGGCGTCCGAGACGGCGCCCATGTCCCCGGCCGCGGCGAAGGCCGGGGCGACGATCG
GG---CCGGCA---------GCGAGGCGCGGGTGGCTGCGCCGGCTCGTGCCGCGGGAGTACCTGCCACGGAGCCGCCGG
TGGAAGCCCCGCGCTGGCGT---CGGTGGCGCTGCGGAGGCCGCGGGCGGGGGCGGGGTGGCGGGCCCGTCGTCGTACCG
GAGGCTGGCGTCGTCGCTGTCGCGGTCGCTCCGGTGGAAGCGGATGCCGGCGCTGCCGTCCCTCAGCCTGCGCGCCGGGT
CGGCGTCGGCGGCGCTGGACGAGGTGGCGTTCCGCGTCATGTACGTCGTGGAGGCCGTCGTGCTAGGCCTCGCGCTCTCC
TGCTTCTTCCTCTGCTGCGGCTGCCACATCTAGCCTGCCGCTAGCGCTAGCTATGTACTCTGTTACTGTTTGTTTGTTAC
TTGCTCTCGGTTCTTTGGTTAGTAATTTTTTCGTTTTGATCGATCGAC----TACTCT-----GCTGTAAATTTCCCGCC
ATGAGGAAAAACCATGGAGAAATTCCCAATCTGCTCAAGATGATTTGCGTCGTTTGGGGAATGGGGAT-----GATGG--
-TGTGATGCAATTTTGTACTGTATGTTCATTTTTGGAGCCGATGAGTTGTTTATTGTAAA-TCTGTCGCTGTCTCGTGCA
AGCACAGCA---------ACAAAAAAGTCTAGCTTTGGGTAGCTGGGGATTGGGAGTGAAGGAGCTG--------GAGGT
CATGGCGATGGAGGAGGCGACAGCGACAGCGACGCCGTTCGGCTTCCCGGCGGAGGTGCGTCCGGGGGCCACGCGGGTGG
GGTGGGTCGGCATCGGGGTCATGGGCGGCGCCATGGCCGCGCGCCTCCTGGCCGCCGGGTACGCGGTGACGGCCTACGCG
CGCACGCCGGCCAAGGCGGGGGCCCTGGTCGCCGCCGGAGCGCGCCTCGCGGGCTCGCCGGCCTCCGTGGCCGCGGCCTC
CGACGTGGTCTTCACCATGGTCGGCAACCCCGGCGACGTCCGCGCCGTCGTCCTGGACGCCGCGTCGGGCGCGCTCGCGG
GCCTCCGCCCCGGCGGCGTGCTCGTGGACTGCACCAGCTCCTCCCCGTCCCTCGCGCGCGAGGTCGCCGCGGCCGCGCGC
GCCGCCGGCTGCCACGCCGTGGACTGCCCCGTCTCCGGCGGCGACGTCGGCGCGCGGGACGGCACGCTCGCGCTCCTCGC
CGGCGGGGACGAGGCCGTGGTGGCCTGGCTCGCCCCGCTCTTCGCGCAACTCGGCCGGCCGACCTATATGGGCCCGCCCG
GCAGCGGGCAGAGCAGCAAGATCGCCAACCAGATCGCGGTGGCCGGCGCGGTGGTCGGCCTCGGCGAGTCCCTGGCCTTC
GCCGGCGCCGCCGGGCTCGACGAGCGGCTGTTCCTCGGCGCGGTGTCCAAGGGCGCCGCGGGGTCGCGCGTGATGGACAT
CTTCGGCGAGCGCGCGGTGAGCCGCGACTTCGCGTCCGGGGGCGCCGTGCGGTACATCATCAAGGACCTCGGCATGGCGC
TGGAGGTCGGCGACGGCCAGGAGGAGGAGGAGGAGGCCAACGTGCTGCCTGGCTCGGCGCTGTACCGGCAGATGTTCTCG
GCCATGTCGGCCAACGGCGACGGCGAGCTGTGCCTGCAGGGGCTGATCACCGTCGTCGAGCGCCTGAACGGCATCCGGAA
GTAAG-----------GCAGGGCAGGTGTTCGTCAAAATGCGGCAGCCGGATATGTATCTCATGGTCATGTATTACTAGT
TTCCCCTGGACAAAATTCGATCTCTATGTCATCTTCTTAAGCAGCCGGATATGAAATCTTTTAATCGATGTATGTTTCAA
TAATGTTACTACTTATCATGTTTTCTCCAAAAAAA---------------------------------------------
----------------------------------------------------------------CTGCCGTTTTACATTT
GCATCTCCAAAAAACTCACACGTTGCG-----------AAAATTGAGACGATGGTGCACATGGCATCTTCTATTCAGATG
CTTGGGATGTGGTACTAATCTGACAGCCGAGGAGCAATCTGCAAACCTTGCAAAATTCCAAGGGCCTCTTGCTCAA----
-----------TTCCAGGTGTCTGTCGGGCATTTGCACCGTGGAAGATAGCATATATCTACACTAGAGCCTTTCCCGGTG
CAGTGCACTGCTTCAGTCTCCTTATCTCTTTCACTCCCAAAAATCTCTTCAGCAGCAAGAATGGCAGCGCCGGGCTCCCT
AGGACTTCTCCAGGCGCCGTCCTTCGCCGCGGCCAAGTGCCGTCCGGCGGCAGCCACGAGCCGGGGAGCGGCGCGAGCCG
TGTTCGCCGTCCGGGCCTCGGCGGGTTCCGCCGCCGCCAAGGACGCCGTGCTCAGGCCCTTCCGTGAGAACAGGGCTCTC
AAGGTCTCACTCTATCCATCTTGATACCTTCCGTGCAGTAATAAATTTCCATTGCTTTGATAGGCTCTGATGATAGATGT
AGAAGT--------------------------------------------------------------------------
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>chr1A_73
--------------------------------------------------------------------------CGAGGC
CAAGTCAAGCCGGGGAATAAAACCGGGCCGGGCGCGTCCCGCGAAAAGGACCCGCCTTTGCTCCTGCTCGCCCCATAAAT
CACGCCGCCCCGCCCAAGACCCACCCAAAAGACTCGTCCAGCTCCCG---ACTTTCCAAGATGGCCATCGCCGAGACGGC
AGCGGTGGTGG------CGACGACGACGTCGGAGACGGCGCCCATGTCCCCGGCCTCGGCGAAGGCCGGGGCGGCGGCGA
TCGCTCCGGCC---------ACGCGGCGCGGGTGGCTGCGCCGGCTCGTGCCGAGGGAGTACCTGCCCCGGAGCCGCCGG
TGGAAGACTCGCGGCGCCAGTCCCGGTGGTGCTGCGGAGGCCGCGAATGGGGGCGGGGCAGCGGGGCCGTCGTCGTACCG
GAGGCTGGCGTCGTCGCTGTCGCGGTCGTTCCGGTGGAAGCGCATGCCGGCGCTCCCGTCCCTCAGCCTGCGCGCCGGCT
CGGCGTCGGCGGCGCTGGACGAGGTGGCCTTCCGCGTCATGTACGTCGTGGAGGCCGTCGTGCTCGGCCTCGCGCTCTCC
TGCTTCTTCCTCTGCTGCGGCTGCCACATCTAGCCTGCCACCAGCCATGTATTCTCTGTTAGTACTAC--TGTTTGTTAG
TTGCTCTCGGTTCTTTGGTTAGTAATTTTTTCGTTTTGATCGATCGAC----TACTCTACTCTGCTGTAAATTTTCCACC
GTGATGAAAATCCATGGAAAAATTCCCAATCTGCTCAATATGATTTTCCTCGTTGGGG-ATGAACGGATGATGGTGTGAA
TTGTGATGCAATTTTA------------ATTTATGGAGCCGG-GAGTTGTTTATTACAAGGTCTGTCGCTGTCTCGTGCA
AATGCTT----------------------------TGGGCAGTTGGTGATTGGGAGTGAAGGAGGACTGGAAGAAGAGGT
CATGGCCATGGAGGAGGCGACGGCGACGG------CGTTTGGCTTCCCGGCGGAGGTGCGGCCGGGGGGCACGCGGGTGG
GCTGGATCGGCATCGGCGTCATGGGCGGCGCCATGGCCGCGCGCCTCCTGGCCGCCGGGTTCGCGGTGACCGCCTACGCG
CGCACGCCGGCCAAGGCGGGGGCCCTGGTCGCCGCCGGAGCGCGCCTCGCGGACTCGCCGGCCTCCGTGGCCGCGGCCTC
CGACGTGGTCTTCACCATGGTCGGCAACCCCGGGGACGTCCGCTCCGTGGTCCTGGACGCAGCCTCGGGCGCCCTCGCGG
GCCTCCGCCCCGGCGGCGTCCTCGTGGACTGCACGAGCTCGTCCCCCTCCCTCGCGCGCGAGGTCGCCGCGGCCGCGCGC
GCCGCCGGCTGCCACGCCGTCGACTGCCCCGTCTCCGGCGGCGACGTCGGCGCGCGCGACGGCACGCTCGCCCTCCTCGC
CGGCGGGGACGAGGCCGTGGTGGCCTGGCTCGCCCCGCTCTTCGCGCACCTCGGCCGGCCGACCTACATGGGCCCACCCG
GCAGCGGGCAGAGCAGCAAGATCGCGAACCAGATCGCGGTGGCCGGCGCCGTGGTCGGCCTCGGCGAGTCCCTGGCCTTC
GCCGGAGCCGCCGGGCTCGACGAGCGGCTGTTCCTCGGCGCGGTGTCCAAGGGCGCCGCGGGGTCGCGCGTGATGGACAT
CTTCGGGGAGCGCGCGCTGAGCCGCGACTTCTCGTCCGGGGGATCCGTGCGGTACATCATCAAGGACCTCGGCATGGCGC
TGGAGGTCGGCGACGGCC---AGGAGGAGGAGGAGGTCAACGTGCTGCCAGGGTCGGCGCTGTACCGGCAGATGTTCTCG
GCCATGGCGGCCAACGGCGACGGCGAGCTGTGCCTGCAGGGACTGATCACCGTCGTCGAGCGCCTGAACGGCATAATGCG
CAAGTAAGGCAAGACCGCAAGGCAGGTGTTCGTCAAAATGCGGCAGCCGGATATGAATCTCATGGTCATGTACTATTATT
AGTTCA--GACAAAATTCGATCTCTATGGCATGTTTTTAAGCAACAATTCGTTAACCTTATCATGGATGATAATG-----
------------TTATCGTGCTTTTCTCGCTGATTTGTGGATGTTATTTTTGCTGCTTCCTTCTTGATGTAACATTAGTG
GTTCAGTTATTTTTGCCAAGTGTGGTATTCAGATGATATG----------------------------------------
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--------GTAGTAGTAATCTGAGAGCCAAGGAGCAATTTGCAAAGGCTGCAAAATTCCAAGGGCCTCTTGCTCAA----
-----------TTCCAGGTGTCTGTCAGGTATTTGCACCGTGCAAGATAGCATAT--CTACTCTGGAGCCTCCT-CTGTG
CAGTGCACTGCTTCAGTCTCCTTATCTCTTTCACTCCCAGAAAC--CTTCAGCAGCAACAATGGCAGCGCCGGGCTCCCT
AGGACTTCTCCAGGCGCCGTCCTTCTCCGCGGCCAAGTGCCGTCCGGTGGCGG---CGAGCCGGGGAGCGGCACGAGCCG
TGTTCGCCGTCCGCGCTTCGGCGGCTTCTGCGGCCACCAAGGACGCCGTCCTCATGCCCTTCCGTGAGAACAGGGCTCTC
AAGGTCTCACTCTCTCCATCTTGACACCTTCCGTGCAGTAATAATTTTCCATTGCTTTGATGGACTCTGATGATAGATGT
AGTAGTGTGTTGTATCTGTCACTAGTTCTGATAGATGCAGTAGTGTGTTCCCTTCAGACTGGATGGATGGTGCAAGTCCA
GAAGTCATCTCTGGGTTGAAGCGTGGAGCAATAAAAATTTCATTGCTTTGATATGATGGAATGTTCCTGCTGGACTCTGA
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>SNPs
------------SS---S---------------S-----------------------S-----------SSSSS---S--
-------------------------------------------------------------SSS----------------
----------S--S--------------------SSS-S---S-SSSSS--------S----------------------
-----S-----SS--------------------S--S--------------------S----------------------
-S--------SSSSSSSSSS--------------------------------------------------S---------
-----------------S--SSS-SSS--------S--------------------S--------------S--------
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----------------------------------------------S--S------------------------------
-----------S--------------------------------------------------------------------
-------------------------------------S--------S-SSSS----------------------------
----------------------------------------------S---------------------------------
----------------------------S---------------------------------------------------
-------SSSSSSSSSSS--------S-----------S------------------------------S----------
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-------------------------------------------------S------------------------------
----------------------S---------------------------------------------------------
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-S------------------------------------------------------------------------------
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------------------------S--------------------S---------S------------------------
-------S-----------------------------------S------------------------------------
-----------------S--------------------------------------------------------------
-------------------------------S------------------------------------------------
-------------------------------S------------------------------------------------
-----------S-----------------------------------------------------------------S--
--S----------------------------------------S---S-------------------------------S
---------S--------S-------------S-------S----S-------S-SS-------S---S---S-------
------------------------S------------------S----S---S-SS--SS-SS-SSSSSS-S-------S
S-------S-----S-------S----S--S-----SS-SSSSSSSSSSSSSSSSSSSSSSSSS-----S----------
------------S-SSSS--S-SSSSSSSSSSSSSSSS---------------S--------------------------
S----------S--------------------------------------S----------------S-S--S---SSSS
SSSSSSSSSSS----------------------------------------------------S----------------
---------------------------------------S-------------------------------------S--
-------------------------------------------------S------------------------------
----------------------S-----------------------S--S------------------------------
------------------------S-------------------------------------S-----------------
-----------S-------------------------S------------------------------S---------S-
--------------------------------------------------S--S-----------S-------S------
S
>forward_199
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-------------------CCCACCCAAAAGACTTCCCA-----------------------------------------
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>reverse_2185
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------------------------ACTCGCTGATTTGTGGATGC------------------------------------
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