>input_sequence_64539
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-------------------------------------------------------------GGGTGCGGCCGCGAGATTA
CCGTCGTGTGTCGTGTTCGCCGGAGAACTTTCGCCGTCGCCGCCCGGATTGGTGTTGCTGAGTGGTGACTGGTGCGTGGC
GCTGACGGTTGGTCA---GAGGGGGCAATGATGGTGGGGTCCGACCAGATCAGCGAATTCTGCAGGGCGCTCGGGGGCGA
CACGCCGATACGCAGCGTGCTGGTCGCCAACAATGGGATGGCCGCCGTCAAGTTCATGCGCAGCATCCGCGCCTGGGCCT
CCGAGACCTTTGGCACCGACAAGGCCGTCCTCCTGGTGGCCATGGCTACCCCGGAGGATCTCCGGGCCAATGCGGAGCAC
GTGCGGATCGCCGACCAGTTCCTGGAGGTCCCTGGTGGAACCAATAACAACAATTATGCAAATGTGCAGCTCATTGTCGA
GGTCAGCGTGGTTCATCCATCGTTCATTCTCCTACTCTTATATCATCCATGTTCATTGTGCTTGTTGCTTGACTACTAGT
TACTAAATGTTTGCTTGTAATTCATC-----TGCCATGACACAGATAGCAGAGAGGACCCGGGTTTCTGCAGTTTGGCCT
GGCTGGGGTCATGCCTCTGAGGACCCAGAGCTTCCGGACGCGCTGGAGGACCTTGTAAATCTATTTTTGATATTAATATG
GAGGTTTACGGGAACTAACTTTTGATGTGACGTCGCTGGAGGACCCTTCCCTGACCACAGCGCGTGGAGAAAGGTGCGCC
TCTCGATGAGTTTAGCTGTTGGCAATCGTGCGCTTCTAAAACTTGCAGTCCATTGTAAGGCGTGGGCTAATTTCGTAGCC
CTGATATTGAGAGAGGCTGGTATTGTGGTTTTAGGGCCATGGGGGATCCATAACTATAAGTTCCGTGGCTGATCTGATTT
GCTGTAATGTAACTGTAATAGTCATCTTACGCTGAAAGCTTTGCTCACGGAACCGAACTCAAAT----------------
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>chr5B_1_TraesCS5B01G510700
CGACGCGCGCACTGCATTTTAGCGTGGCTGTTGGAGTCAGCGTTGGTGGCTGCGCAAAATCAGGCGAACGGCGCGTGACA
AACTAGTTTTTAGCGCGCCGCGTGTTGCGCGTCTCATGGAGATGCTCTAAGTGAGTGACTAGTGGGTCGTGGTCTTCTAG
CAGATGGACGAAAGAGACCGGGTGTGTGTGGGGGAGTCGTCGTAGTCGTCTCCTCGTGTCCAAGCTGCCACCCGGCCCTC
TCCCTCCCGTCTTCCCTCTGCTCTGCGGTGGACGGCGCGCC-GCCGCAGCCAGGCATTCAAGGCCCGCCCCGCCGCCGCC
GCCGCCGCCGCCATCTTCGATCTTCCTCCCCCCTCCCTTCCAGTGCGCGCGGCCGGCAGGCATTCCGTCGAACGCCTCCG
GCGCGCACCCCCCCTCCCCCTCCCCCCACCACTCCCGCGGTCGAGTCAGTCCCGGCGTCCACCCC-CCTCTCTTCGGAGC
AGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTAGCCGCTCTTCTCCGTCCGTCTCCGTG
TGGGCTTCCCTCCCTCCTCCAG-ACCGTGTTCGACTCCGCCA----CCCCTCCGATCCCCCGCAGTATACTAT----ATA
AGCAGCAGCCACCACCAGATTACCAAACCGGTTTCGAATTCGCCGG----------ATTTCGGGTGCGGCCGCGAGATTA
CCGTCGTGTGTCGTGTTCGCCGGAGAACTTTCGCCGTCGCCGCCCGGATTGGTGTTGCTGAGTGGTGACTGGTGCGTGGC
GCTGACGGTTGGTCA---GAGGGGGCAATGATGGTGGGGTCCGACCAGATCAGCGAATTCTGCAGGGCGCTCGGGGGCGA
CACGCCGATACGCAGCGTGCTGGTCGCCAACAATGGGATGGCCGCCGTCAAGTTCATGCGCAGCATCCGCGCCTGGGCCT
CCGAGACCTTTGGCACCGACAAGGCCGTCCTCCTGGTGGCCATGGCTACCCCGGAGGATCTCCGGGCCAATGCGGAGCAC
GTGCGGATCGCCGACCAGTTCCTGGAGGTCCCTGGTGGAACCAATAACAACAATTATGCAAATGTGCAGCTCATTGTCGA
GGTCAGCGTGGTTCATCCATCGTTCATTCTCCTACTCTTATATCATCCATGTTCATTGTGCTTGTTGCTTGACTACTAGT
TACTAAATGTTTGCTTGTAATTCATC-----TGCCATGACACAGATAGCAGAGAGGACCCGGGTTTCTGCAGTTTGGCCT
GGCTGGGGTCATGCCTCTGAGGACCCAGAGCTTCCGGACGCGCTGGAGGACCTTGTAAATCTATTTTTGATATTAATATG
GAGGTTTACGGGAACTAACTTTTGATGTGACGTCGCTGGAGGACCCTTCCCTGACCACAGCGCGTGGAGAAAGGTGCGCC
TCTCGATGAGTTTAGCTGTTGGCAATCGTGCGCTTCTAAAACTTGCAGTCCATTGTAAGGCGTGGGCTAATTTCGTAGCC
CTGATATTGAGAGAGGCTGGTATTGTGGTTTTAGGGCCATGGGGGATCCATAACTATAAGTTCCGTGGCTGATCTGATTT
GCTGTAATGTAACTGTAATAGTCATCTTACGCTGAAAGCTTTGCTCACGGAACCGAACTCAAATTTATTCACTCAGTAAA
AGTTGTTGGCAGATTATATGCTGCCCATACGTCAAATCTGCAGATTTGTTATATATTTCCAGATGCAACAAAAAGAAGGA
AGAAAATACTATAAACAAATATCGTTATTGGCTTAATGGTTGTGTACTTGTGTATTTGGAACGATGAATAGATTG-TTTC
ATAGCATTGCAGGTCAACACTGGTCTGCCTTTTGGCTTGTTCATCTCCGTTCTTTCTGTGTGTTGAGGCATTTAAGATTA
TTATCACCAGCCTGCGTGATGAGTGTTTACTTTTAAGCAATAATGAAAAAAAAATCACGTGCTATGGCGAAATACCGTGT
CCCTTAAAATGCGCTATTAGCATGCTATATCATGCTATTAGCGAGACATTGTATACTGCTTTATTTAGCGAGACATTTCT
CAGAACGCTATAACGCACTG------------------------------------------------------------
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------------------------------------------TTTTTTCACTGCTTTTAAG-GGTACAAATGCCTGTTGT
ATACAGGTAAACTTGGTATTGGCACAATGTGCTGGTCAAACGTAGGCCTTGCTTAGTTGCTTCTGACTCAATATATGTAA
CTTACTGGTTACATGGCAATGCTGACAAGGGCACCTTGGACTGGTTTTATCGTACATGTGCAGGAGACACACTTGGCGAC
AATCTCCTCTTCCCACACGGCCACACAAGGGTTGCATTCAAGAACTGATGAGTACACAAGTTCTTGTTTTCTTGTTGTAG
ACCAAAGTCAAATGTTTACTCAGAAAAATAATGTAGTCATCAGTTTCATTCGCTATATTTGTTCATAACTACTCCCTCTG
TTTCATAATATAATAGCATTTTTTTGAGTGCAGCGATTCGGTGCCTAGACTCATCTGCACCCGGTCAGAAAAAAGATTCA
AAATAAATATTAGAAAAATTCAAAAATTCCAATTTTTCCCCATGGTAGACAATTTATTGTGTGAGGTTCGCTCCAAATAT
TAGCTCATTTGGACATCTGAGTAGCTCTCAGCAAAAAAGAAAAATCGG
>chr4A_237
CCTCC---------------------------------------------------------------------------
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--CCTCCCGTCTTCGCTCTGCTCCGCGGCGGACGGCAGCGCAGCCGCAGCCAGGCATTCAAGGCCCGCCCCGCCGCCGCC
GC------CGCCGTCTTCGATCTTCCTCCCCCTCCCCTTCCAGTGCGCGCGGCCGGCAGGCATTCCGTCGAACGCCTACG
GTGCGCACCCACCAGG-CCCTCCCCGCACCACCCCCGCGGTCGAGTCGGTCCCGTCGTCCACCTCTCCTCTCTTCGGAGG
AGGACTCCCTCTCCGTGACC------------------------------------------------------------
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-------------------------------------------------AACTAGTCGCTATTCTCCGTCCGTCTCCGCG
TGGGCTTCCCTCCCTCCTTCCA-ATCGCGTTCGACTCCGCCCGCCGCCCTTCCAATCCCCGGCGACATA---T----ATA
AGCAGCAGCCAGCACCAGATTACCAAACCGGTTTCGATTTCGTCGGAGTAGATTATATCTCGGGCGCGGCCGCGGGATCA
GCGTCTGCT---GTGTTCGTCTGAAAGCTTGCGCCGTCGCCGCCCGCATTGGTGGC-------GGTGACTGCTGGGCGGC
GCTGAAAGTTAGTTTTTTGAGGGGGCGGCAATGGCGGGGTCCGACCAGATCAGCGAATTCTGCAGGGCGCTTGGGGGCGA
CACGCCGATCCGCAGCGTGCTGGTCGCCAACAATGGGATGGCGGCCGTCAAGTTCATGCGCAGCATCCGCGCCTGGGCCT
CCGAGACCTTTGGCACCGAGAAGGCCATCCTTCTGGTGGCCATGGCGACCCCAGAGGACCTCCGGGCCAATGCGGAGCAT
GTAAGGATCGCTGACCAGTTCTTGGAGGTCCCTGGTGGAACCAATAACAACAACTATGCAAATGTGCAGCTCATTGTCGA
GGTTAGTGCGGTTCATCCATCAGTCATTCTCCTGCTCTTATATCATCCATGTTCATTGTGCTTGGTACTTGACTAGTAGT
TACT-AATGTTTGCTTGTGATTCACCTGTCATGTCATGATACAGATAGCAGAGAGGACCCGGGTTTCTGCAGTTTGGCCA
GGCTGGGGTCATGCCTCTGAGGACCCAGAGCTTCCAGATGCGCTCAAGGA------------------------------
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>chr5D_853
GCT-----------------------------------------------------------------------------
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---------------------------------------------------------GCTCCTCTCCGTCCGTCTCCGTG
TGGGCTTCCCTCCCTCCTTCCAAATCGTGTTCGACTCCGCCA----CCCCTCCAATTCCCCGCAATACA---TATAGATA
AGCAGCAGCCACCACCAGATTACCAAACCGGTTTCGAATTCGCCGG----------ATTTCGGGTGCGGTCGCGAGATTA
CCGTCGTGTGCCGTGTTCGTCGGAGAACTTGCGCCGTCGTCGCCCTGATTGGTGG--------------TGGTGAGTGGC
GCTGAAGGTTGGTCA---GAGGGGGCAATGATGGTGAAGTCCGACCAGATCACCGAATTCTGCAAGGCCCTCGGGGGCGA
CACGCCGATCCGCAGCGTGCTGGTCGCCAACAATGGGATGGCCGCCGTCAAGTTCATGCGCAGCATCCGCGCCTGGGCCT
CCGAGACCTTTGGCACCGACAAGGCCGTCCTCCTGGTGGCCATGGCGACCCCGGAGGACCTCCGGGCCAACGCGGAGCAC
GTGCGGATCGCCGACCAGTTCCTCGAGGTCCCCGGTGGAACCAATAACAACAACTATGCAAATGTGCAGCTCATTGTCGA
GGTTAGCGCGGTTCATCCATCATTCATTCTCCTGCTTTTATACCATCCATGTTCATTGTGCTTGTTGC------------
-----------------TAATTCATC-----TGTCATGACACAGATAGCAGAGAGGACCCGGATTTCCGCAGTTTGGCCT
GGCTGGGGTCATGCTTCTGAGGACCCAGAGCTTCCAGATGCGCT------------------------------------
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>chr4A_1899
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-------TGTAACTGTAATAGTCATCTTACACTGAAAGCTTTGCTCA---AACCGAACTCAAATTTATTTACTCAGTAGA
AGTAGTTGGCAGATTATGTGCTGTCCATACATCAAATCTGCAGATT-GTTATATATTTCCAGATGCAACAAAAAGAAGGA
AGAAAATACTGTTGACAAATG-CGGTATTGACTTAATGGTTGTGTACTTGTGTATTTGGAACGATGAATAGATTTTTTTC
ATAGCATTTCAGGTCAACATTGGTCTGCCTTTTGGTTTGTTCATCCCCGTTCTTTCTGTGTGTTGAGACATTTAAGATTA
TTATCACCAGCCTGCATGATGAGTGTTTACTTTTAAGCAAT---GAAAAAAAAATCATGTGCTATGACGAAACAACGGGT
CCTTTAATATACGCTATTACTGTGCTATATCATGCTGTTAGCGAGACGTTGTATACCAATTTATTTAGCAAAATATTTCT
CAGAACTCTATACCATGCTATTTTTTTTGGATAACGCTAACGCCCACACGTGTGGTGGGAGCGTAACCCGCACACACACC
CTATAACATACAGATTGCGCCATGTCACCGCATGCATGCATGTGAGAATCTTTTTGGATTTCAGTTTTTAAAATGTTTTA
TCTCTTAAATGAAAATCCGATTGAAGATCCGTTTCCACCATTAAATCCCTCGCAACGAGATCTTCTCATATTAATATATT
TCGATGAAATTTTTTTGGGTTAAAAGTTGTCATGTCTAGTGCACATGAATTGCCATGGTGTTTACACTGAAATTACCATG
ATATGTTTCGGCTATTTTCTTCTACATTTAAAAGTAAAATTTGACATATATAAAACAGGGAATTAAGAAACTAGACTTGC
CATGAACCATAAGCTAAAATTGCCATTATACATGCACTTAAAATTGCCGTGGTTCATAAAAAAAAAATTTCATGGTCAAA
ATACTGGAGTTGCCATCATCAAAATACCAAAATTGCCATGCTCTACAAACTGAAATTGTCACATGGTAACTTTAGTTTAA
GCACCATGACAACTACAGTGTAAACATCATGGCAACTTTTGGGCAAAAAAAATTTCTTCGAAACATATCAACATGCGGTC
TAGTTTTGAAGATCTTGTCAAGACGGATTTAATGGTGAAAACGGATTTTTAATGATTTTTCAATTAGTAGATTAAATATT
TTTAAGCTGAAAATCAAAAAGTTTCCTGCTGATGTCATATGTACACTTGTGGCAAAATAAATGATAAAGGAGGTGTGTGG
ACGATTTGCAAGATGCCATATGGGTGGGCGTTAGTTATTTCTTTTTTTCACTGCTTTTAAGTGGTACAAATACCTGTTGT
ATACAGGTAAACTTGGTATTAGCACGATATGCAGGTCAAACGTAGGCCTTGCTTAGTTGCTTCTTACTCAATATATGTAA
CTTACTGGTTACATGGCAATGCTGACAAGGGCACCTTGGACTGGT-TTATCGTACATGTGCAGGAGACGCACTTGACGAC
AATCTCCTCTTACCACACGGCCACACAAGGGTGGCATTCAAGAACTGATGAGTACAGAAGTTGCTGTTTTCTTGTTGTAG
ACCAAAGTCAAATGTTTGCTCAGAAAAATAATGTACTCATCAGTTTCGTTCGCTATATTTGTTCATAACTACTCCTTTCG
TTTCATAATATAAGAGCATTTTTTT-------------------------------------------------------
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>chr5D_1919
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---------------------------TACACTGAAAGCTTTGCTCA---AACCGAACTCTAATTTATTTACTCAGTAGA
AGTAGTTGGCAGATTATATGCTGTCCATACATTAAATCTGCAGATT-GTTATATATTTCCAGATGCAACAAAAAGAAGGA
AGAAAATACTATTGACAAATG-CGTTATTGACTTAATGGTTGTGTACTTGTGTATTTGGAACGATGAATAGATTG-TTTC
ATAGCATTTCAGGTCAACATTAGTCTGCCTTTTGGCTTGTTCATCTCCGTTCTTTCTGTGTGTTGAGACATTTAAGATTA
TTATCACCAGCCTGCGTGATGAGTGTTTACTTTTAAGCAAT---GGAAAAAAAATCACATTCTATGGCGAAATACCGTGT
CCCTTAAAATACACTATTAGCTTGCTATATCATGCTATTAGCGAGACATTGTACACTGCTTTATTTAGCGAGACATTTCT
TAGAACGCTATAGCGCGCTA------------------------------------------------------------
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-----------------------------------------TTTTTTCCACTGCTTTTAAG-GGTACAAATACCTGCTGT
ATACAGGTAAACTTGGTATTGGCATAATGTGCTGGTCAAACGTAGGCCTTGCTTAGTTGCTTCTTAC-------ATGTAA
CTTACTGGTTACATGGCAATGCTGACAAGGGCTCCTTGGACTGGT-TCATCGTACATGTGCAGGAGACACACTTGACGAC
AATCTCCTCTTCCCACACGGCCACACAAGGGTGGCATTCAAGAACTGATGAGTACACTAGTTCTTGTTTTCTTGTTGTAG
ACCAAAGTCAAATGTTTGCTCAGAACAATAATGTACTCATCAGTTTCATTAGCTATATTTCTTCATAACTACATCCTTCG
TTTCATAATATAAGAGCATTTTTTT-------------------------------------------------------
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>SNPs
-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS------------S--------S----S-------SSSS----------------------------------------
--SSSSSS----S-------------------SS-------------------------------------------S--
-S--------S--SSSS--------S------S--------------S------S--------S---------------S
----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S------------------------
------------------S-SS--S----------------------------S----------S----SSS--------
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----------S--------S----------S-----------------------SSSSSSSSS-----------S-----
-----S--------------------------------------------------------------------------
---------S----------------------------------------------------------------------
----------------------------------------------S-----------S---------------------
-----------------------------------------------------S--------------------------
---S----S------------S-----------S-----------------------------------------S----
----S----------------------------S----------------------------------------------
-----------------------------------S--S-----SS----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS-----------------------S----------------SSS-------------------S--------S-
---S-------------------S------S---------------S---------------------------------
------------SS------SS--------S-------------------------------------------------
--------S----------S-----------------------------------------------S------------
-----------------------------------------SSS------------------------------------
----------S----------S----------------------------------------------------------
------------S---S--S------------------------------------------------------------
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-----------------------------------------------------------------------S--------
----------------------------------------------------------------S---------------
---------------------------------------------S-----------------------------S----
--------------------------------S-----------------------------------------------
-----------------S-----------------S-----------------------------------------SS-
-------------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_219
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---------------------------------------TCGTAGTCGTCTCCTCGTGT---------------------
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>reverse_1701
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--------------------TTTGATGTGACGTCGCTGGA----------------------------------------
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>forward_1449
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---------------------------------------------------------------------CTCATTGTCGA
GGTCAGCGT-----------------------------------------------------------------------
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>reverse_3643
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------------------------------------------GCCTAGACTCATCTGCACCC------------------
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