>input_sequence_64515
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-----------------------------ATGGGCGACCGCAAGATGGCGTCGTTGCTGCTACTGCTCTGCCTCTTCTCC
CTCCTCTT---CGCCGCGGCGCCCCGGTGCGCGGCGTACAGCCCGCGGACGCTGTTCCTGGTGAAGCCCGACCCGATCGT
GCTCCGGGACCACGGCGGCGCGCTGCTCACGGGGAACCTCACGGTCAAGGTCAACGTCCTCTACTACGGCCGCTTCGCCC
CCGCGCAGCGCGCCGTCGTCGCCGACTTCGTGCGGTCGGTCTCGGCGCCGGCCCCGGGCGGCGGCGCCGAGCCGTCCGTG
GCGTCCTGGTGGCGCACCGTCTCGCTGTACCGCGGCGGGGGCGCGCGGCTGAGGCTCGGCCGGGAGCTCCTCGACGAGCG
CATGTCGCTGGGCCGGTCCCTCTCGCTGGAGAACGTCACGGCGCTGGCGAGGGGCGCGGGGCACCACCGCGGCGCCATCA
CCGCCGTGCTCACGGCGCCCGACGTCCTGGTGGCGCCCTTCTGCATGTCCCGGTGCGGCGTCCACGACCACGCCACCGCC
GGCGCGCACGGCAGGGCGAGGTACGCCTACCTGTGGGTGGGCAACCCGGCCCAGCAGTGCCCCGGCCAGTGCGCGTGGCC
GTTCCACCGGCCGTCGTACGGGCCCCAGGCCCCGCCGCTCGTGCCGCCCAGCGGCGACGTGGGAACGGACGGCATGGTGA
TCAGCCTCGCCGCGCTCCTCGCCGGCACGGTGACCAACCCCTACGGTGACGGGTACTACCAGGGCAATGATGCCGACGGC
GCCGGGCCGGAGGCCGCCACGGCGTGCGCCGGCATCTTCGGCAGCGGCGCCTACCCCGGCTACCCGGGGAGGCTGCTCGT
GGACCGGGCCACCGGCGCGAGCTACAACGCCGTCGGGCTGAGCGGGAGGAAGTACCTGCTCCCGGCGCTGTGGGACCCGA
CAACGTCGCAGTGCAGGACGCTTGTGTAG---------------------------------------------------
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>chr7D_1_TraesCS7D01G180100
AGGACTCAAAGAGGTAGACCATTAA--TCTCGGCCGTCAAATCATGTCAATCCAACGACCTAGATTGCTCCAATGATGAG
CATTCAACATGTTTAGCGTGCAATTAATATATCTTGCCAAATATCAACGTCTATGCTAATCAGGTAATTAACACGTGATT
GATATCCTATCTAATATCAACGTGCAATTAATTTCCTCTTTAATATTAAGGTGGATTGGGCGTACGCATTTACTGGTCAA
TATAAAAAGACCCAAAAGGTGGATCCAATTAATCCAGGCCAAAA---------AATCCAACGATCTAGATTGCTCCAACA
ATGAGTGTTCAACATATTTAGCATGCAACTAATATCATGCTAAATATCAACCTCTATACTAATCACAAAATTAACGTATA
ACTTTTTTTCTAGTAAATTAACGCATAATAGATATCCTACCTAATATCAACGTGCAATT---------------------
---------AACTTTCTTTCAAATATTAACGTGCAATACACGTAGTGTTGAAG----AAAACGTGCATTGCATGTACCAG
TAACAACAAAACCACTTGTGCACCAGCCACCAATGGTATATCTCAATCCACCTTCGAAAGCTGGTAAATCAACTAAGAAA
TCCAGTCGGCCGGACTTGCATCCCGGTCACAACACAAGAAAAATCTCAGAGCATTCCACAGCCAGCCATGAAAATTGTTG
CGGTCACGTTGGCACCCAAGTGGCACTGACATTCTCCTCGTCCATGTCCCCGAACAACGAACTCAAACCCAGAACCGCGG
AACCGGACGAG-TGCACGCGCCTGCCATGGGTTCCTTCAACTCCTTTGACGCGCCAAAGCCCCACACACACCCCATCACG
TATTCACGTCGTCGTCTTTACGCCCCATACGCTCCGGGCTGCTATTTAAGCC-CCCCGCAGACCGTGGTCGATCGACAAA
CTCATCAAGCACACACAAGTCAGCAAGCA--------CATCACTAGTCAGTACT--------------CACAGCCAGAAT
CAGCTCGATCGTTGATCCTCCTGCATGCCATGGGCGACCGCAAGATGGCGTCGTTGCTGCTACTGCTCTGCCTCTTCTCC
CTCCTCTT---CGCCGCGGCGCCCCGGTGCGCGGCGTACAGCCCGCGGACGCTGTTCCTGGTGAAGCCCGACCCGATCGT
GCTCCGGGACCACGGCGGCGCGCTGCTCACGGGGAACCTCACGGTCAAGGTCAACGTCCTCTACTACGGCCGCTTCGCCC
CCGCGCAGCGCGCCGTCGTCGCCGACTTCGTGCGGTCGGTCTCGGCGCCGGCCCCGGGCGGCGGCGCCGAGCCGTCCGTG
GCGTCCTGGTGGCGCACCGTCTCGCTGTACCGCGGCGGGGGCGCGCGGCTGAGGCTCGGCCGGGAGCTCCTCGACGAGCG
CATGTCGCTGGGCCGGTCCCTCTCGCTGGAGAACGTCACGGCGCTGGCGAGGGGCGCGGGGCACCACCGCGGCGCCATCA
CCGCCGTGCTCACGGCGCCCGACGTCCTGGTGGCGCCCTTCTGCATGTCCCGGTGCGGCGTCCACGACCACGCCACCGCC
GGCGCGCACGGCAGGGCGAGGTACGCCTACCTGTGGGTGGGCAACCCGGCCCAGCAGTGCCCCGGCCAGTGCGCGTGGCC
GTTCCACCGGCCGTCGTACGGGCCCCAGGCCCCGCCGCTCGTGCCGCCCAGCGGCGACGTGGGAACGGACGGCATGGTGA
TCAGCCTCGCCGCGCTCCTCGCCGGCACGGTGACCAACCCCTACGGTGACGGGTACTACCAGGGCAATGATGCCGACGGC
GCCGGGCCGGAGGCCGCCACGGCGTGCGCCGGCATCTTCGGCAGCGGCGCCTACCCCGGCTACCCGGGGAGGCTGCTCGT
GGACCGGGCCACCGGCGCGAGCTACAACGCCGTCGGGCTGAGCGGGAGGAAGTACCTGCTCCCGGCGCTGTGGGACCCGA
CAACGTCGCAGTGCAGGACGCTTGTGTAGACGCCGTGGGAGCAGGCAAAATGGATGGTCTCGCACTCTAGCTGCATGAGA
TCCGGAGGAGAAATAAATGCCCTCCTCCATTTATTTTTCAGTCCATTGTA---GTGTAGTTCACTTTGTTGCATTTACTT
GTTTGATCCGTACCCGTTGCAATGTGTTTTCTGAAGCAGCAGAGGTTGTATT-GTACTCCGTGTGAGTTGTCATGCATCG
CAGTATGCGAGTATCAATGACTTTCCATGCATGTTTATTTTCGGAGGTGCTTCTCGACACACTGGATGTTGTTGCTGGTG
CTATTGTCTTTGATAGAGAGGCGATTAAAAATCCAAACTTCACAAGTTCATGCTCGAGTGGACGGCGAACTATCGAAGGA
AGAAGACGATCGATATGATTTTCAATGTAACTTTTTACATATTGTTTTGTACTCCCTTCGTCTGGAATTACTTGTCCAAA
AAATAGATACAAATGGATGTATCTAGAACAAAAATAAGTCTAGATATATTCATTTCTGCGACAAGTAATTTGAGACAGAG
GGAGTATCAAAGTCCTCCTTCCTCTGTGTTGTCTATGATTTTCCTTGGTAATATCAG--ATATAAGATAGAAACGCATTG
GACTCAGCTGACTAATCCTTAGTTAATCGCATGATCGTTCGTCATGCAATTATGAACATTTTTCAAACAAGGATAACTTT
TGAAAATTATGAATATTTTCTGAAAATGCAAACATTTTTTGAATTTTTCAACATAATTTTGAACACGGGTTCTTTTTTAA
ATTCAGAACAATGTTTAAAATTCCCAAATATTTTTTAAAACAAGTATATTTATTGAATTTGTGAGAAAATTTTTAAAACA
AAAATATTTCTTAAGTCCTTTTTTCAAATGTGAACATTTTATAAACATCTTTTGAATTTTTTTAGTTTTTG-AAAAGAAA
AAATAGAAA---GAAAAAAAGTAAAGAAAATAACATAAAGAGAAAAACCGGGTTAGGAAACTTCTAGAGGGTTCCCAAA
>chr7B_1
AGGACTCAACGGGGCATATCCAATTATTCTCGGCTATCAAACCATGTCAACCCAAGGGCCTAGATTGCTTGAATAATGAG
GCATCAACATGTTTAGCATGCAATTAATAT--CTTGCCAAATATCAATGTCTATGCTAATCACGTGATTAACACGTAATT
GGTATCCTACCTCATATCAACGTGAAATTAATTTCCTCTCTAATATTAACATGGATTGGGAGTACCCATTTACTGATCAA
TATAAAAAGACCCAAAAGGCGGATCCAATTAATCCCGGCCATAAAAACATTACAATCCAACGATCTGGATTACTCCAGTG
ATGAGTGTTCAACATATTTAGCATGCAACTAATATCATGCTAAACATCAACCTCTATGCTAATCACAAAATTAACGCATA
TTTTTTTGTCAT-TAAATTAACGCATAATTGATATTCTACCCAATATCAACGTGTAATCAACTTTCTTCCAGATATCCCT
CAAAAAAAAAACTTTCTTCGAGATATTACCGTGCATTACACCTAGTTTTCAAAAAATAAAACGTGCATTGCATGTACAAG
TAACAACAAAACCACTTTTG-------CACCGATGGTATATCTCAGTCCACCTTCAAAAGCTGGTAAATCAACTAAGAAA
TCCAGTCAGCCGGACTTGCATCCCGGTCACAACACAAGAAAAA-CTCGGAGCATTCCACAGCTAGCCATGAAAATTGTTG
CGGACACGTTAGCACCCAAGTGGCACAGACATTC--------------CCCGATCAACGAACTCAAAACCAGAACCGCGG
AACCGGACGGAATGCACGCGCCTGCCATGGGTTTCTTCAACTCCTTTGACGCGCCAAAGCCCCCCACACACCCCATCACG
TATTCACGTCGTCGTCTTTACGCCCCATACGCTCCGGGCTGCTATTTAAGCC-CCCCGCAGACCCTGATAGATCGACAAA
CTCATCAAGCAAACACAAGTCAGCAAGCA--------CACCACGAG-------T--------------CACAGCCAGAAC
CAGCTCGATCGTCGATC---CTGTATGCCATGGCCGACCGCCAGATGGCATCGTTGCTGCCACTGCTCTGCCTCTTCTCC
CTCCTC---GCCGCCGCGGCGCCGCGGTGCGGGGCGTACAGCCCGCGGACGCTGTTCCTGGTGAAGCCCGACCCGATCGT
GCTCCGGGACCACGGCGGCGCGCTGCTCACGGGGAACCTCACCGTCAAGGTCAACGTCCTCTACTACGGCCGCTTCGCAC
CGGCGCAGCGCGCCGTCGTCGCCGACTTCGTGCGGTCGGTCTCGGCGCCGGCCCCGGGCGGCGCCGCCGAGCCGTCCGTG
GCGTCCTGGTGGCGCACCGTCTCGATGTACCGCGGCGGGGGCGCGCGGCTGAGGCTCGGCCGGGAGCTCCTCGACGAGAC
CATGTCGCTGGGCCGGTCCCTCTCGCTGGAGAACGTCACGGCGCTGGCGAGGGGCGCGGGGCACCACCGCGGTGCCATCA
CCGCCGTGCTCACGGCGCCTGACGTCCTCGTGGCGCCCTTCTGCATGTCCCGGTGCGGCGTCCACGACCACGCCACCGCC
GGCGCGCACGGCAGGGCGAGGTACGCGTACCTGTGGGTGGGCAACCCGGCCCAGCAATGCCCCGGCCAGTGCGCGTGGCC
GTTCCACCGGCCGTCGTACGGGCCCCAGGTCCCGCCGCTCGTGCCGCCCAGCGGCGACGTGGGAACGGACGGCATGGTGA
TCAGCCTCGCCGCCCTCCTTGCCGGCACGGTGACCAACCCCTACGGTGACGGGTACTACCAGGGCAATGATGCCGACGGC
TCGGGGCCGGAGGCCGCCACGGCGTGCGCCGGCATCTTCGGCAGCGGCGCCTACCCCGGCTACCCGGGGAGGCTGCTCGT
GGACCGGGCCACCGGCGCGAGCTACAACGCCGTCGGGCTGAGCGGGAGGAAGTACCTGCTCCCGGCGGTGTGGGACCCGA
CAACGTCGCAGTGCAGGACGCTTGTGTAGACTCCGTGGGAGCAGGCAAAATGGATGGTCTCGCACTCTGGCTGCATGAGA
TCCGGAGGA-AAATAAATGCCCT----CATTTATTTTTCAGTCCATTGTAGTA--GTAGTTCACTTTGTTGCATTTACTT
GTTTGATCCGTACTCGTTGCAATGTGTTTTCTGAAGCAGCAGAGGTTGTATTTGTACTCCGTGTGAGTTGTCATGCATCG
CAGTATGCCAGGAT------------------------------------------------------------------
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>chr7A_718
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-----------------------------CATTC--------------CCCGAAGAACGAACTCAAACCCAGAACCGCGG
AACCGGAC-GAATGCACGCGCCTGCCATGGGTTTCTTCAACTCCTTTGACGCGCCAAAGCCCCCCACACACCCCGTCACG
TATTCACGTCGTCGTCTTTACGCCCCATACGCTCCGGGCTGCTATTTAAGCCCCCCGGCAGACCCTGATAGATCGACAAC
CTCATCAAGCGCACACAAGTCAGCAAGCAGCCAAGCACACCACGAG-------TCACAGCCAGTCAGCCACAGCCAGAAC
CAGCTCGATCGTTCATC---CTGCACGCCATGGGCGACCGCAAGACGGCGTCGTTGCTGCCACTGCTCTGCCTCTTCTCC
CTCCTCGTCGCCGCCGCGGCGCCGCGGTGCGCGGCGTACAGCCCGCGGACGCTGTTCCTGGTGAAGCCCGACCCGATCGT
GCTCCGGGACCACGGCGGCGCGCTACTCACGGGGAACCTCACGGTCAAGGTCAACGTCCTCTACTACGGCCGCTTCGCAC
CGGCGCAGCGCGCCGTCGTCGCCGACTTCGTGCGGTCGGTCTCGGCGCCGGCCCCGCGCGGCGCCGCCGAGCCGTCCGTG
GCGTCCTGGTGGCGCACCGTCTCGCTGTACCGCGGCGGTGGCGCGCGGCTGAGGCTCGGCCGGGAGCTCCTCGACGAGCG
CATGTCGCTGGGCCGGTCCCTCTCGCTGGAGAACGTCACGGCGCTGGCGAGGGGCGCGGGGCACCACCGCGGCGCCATCA
CCGCCGTGCTCACGGCGCCCGACGTCCTCGTGGCGCCCTTCTGCATGTCCCGGTGCGGCGCCCACGACCACGCCACCGCC
GGCGCGCACGGCAGGGCGAGGTACGCGTACCTGTGGGTGGGCAACCCGGCCCAGCAGTGCCCCGGCCAGTGCGCGTGGCC
GTTCCACCGGCCGTCGTACGGGCCCCAGGCCCCGCCGCTCGTGCCGCCCAGCGGCGACGTGGGAACGGACGGCATGGTGA
TCAGCCTCGCCGCGCTCCTCGCCGGCACGGTGACCAACCCCTACGGCGACGGGTACTACCAGGGCAATGATGCAGACGGC
GCCGGGCCGGAGGCCGCCACGGCGTGCGCCGGCATCTTCGGGAGCGGCGCCTACCCCGGCTACCCGGGGAGGCTGCTCGT
GGACCGGGCCACCGGCGCGAGCTACAACGCCGTCGGGCTGAGCGGGAGGAAGTACCTGCTGCCGGCGCTGTGGGACCCGA
CCACGTCGCAGTGCAGGACGCTGGTGTAGACGCCGTGGGAGCAGGCAAACTGGATGGTCTCGCACTCTCGCTGCATGAGA
TCCGGAGGAGAAATAAATGCCCTCCTCCATTTATTTTTCAGTCCATTGTAGTAGTGTAGTTCACTTTGTTGCATTTACTT
GTTTGATCCGTACCCGTTGCAATGTGTTTTCCGAAGCAGCAGAGGTTGTA-TTGTACTCCGTGTGAGTTGTCATGCATCG
CAGTATGCGAGTATCAATGACTTTCCATGCATGTTTATTTTCGGGGGAGCTTCTGGACACACTGGATGTTGCTGCTGGTG
CTATTG-------------------TAAAAATCCAAACTTCACAAGTTCATGCTCGAGTGGACGGCGAACTATCGAAGGA
AGAAGACGATCGATATGATTTCCAATGTAACTTTTTACATATCGTTTTGTACTCCCTTCGTCTGGAATTACTTGTCCAAA
AAATAGATACAAATGGATGTATCTAGAACTAAAATACGTCTAGATACATTCATTCCTGCGATAAATAATTTGGAACGAAG
GGAGTATCAAAGTCCTCCTTCCTCTGTGTTGTCTATGATTTTCCTTCGTAATATCAGATATATAAGATAGAAAAGCATTG
GATTCAGCTGACTGATCCTTAGTTAATCGCACGATCTTTTGTCATGTAATTATGAACATTTTTAAAACAAGGATAACTTT
TG-AAATTATGAATATTTTCTGAAAATGCAATCATTTTTTGAATTTTTCAACATAATTTTGAACACGGGACCGTTTTAAA
ATTCAGAACAATGTTTAAAGTTCCCAAACATTTTTTAAAACAAGTATAGTTATTGAATTTTTGAGCAAAATTTTAAAACA
AAAATAATTTTTAAGTTCTTTTTTCAAATGTGAACGTTTTTTAAACATCTTTTCAAATTTTTGAGTTTTTTAAAATAAAA
AAATAGAAAAAGGAAAAAAAGTAAAGAAAATCACATAAAGAGAAAAAACGGGTTAGGAAACTTCTAGAGGGTTCCCAAA
>SNPs
---------S-S--S-S-S-SSSSS---------SS-----S--------S----S-S-----------SS---S-----
SSS--------------S------------SS---------------S--------------S--S----------S---
-S-------S--S-----------S--------------S---------SS---------S----S---------S----
-------------------S---------------S-----S------------------------S----S-----SSS
--------------------------------------------S------------S------------------S---
SS-----S--SSS----------------S-----S-----S------------S---S---------------------
------------------SS-S------S------S-----S----S--S--S------------------------S--
-----------------S--SSSSSSS----S-------------S---------S------------------------
-------S-----------------------------------S---S--------------S-----------------
---S------S---------------S-------SSSSSSSSSSSSSS--------------------------------
---------SS----------------------S-----------------------------S----------------
----------------------------------------------------------------S--S-S----------
---------------------------------------S---S--SSSSSSS--------------------------S
-----------------SSS----------------------------------------S-------------------
------S----------------S--------------------------------------------------------
------------------------------------------------------------------------------S-
-S-------------------------------------------------------------S----------------
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----------------------------S---------------------------------------------------
--------------------------S-----------------------------------------------------
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--------------------------------------------S--S------S----------------S--------
------SSSSSSSSSSSSSSSSSSS-------------------------------------------------------
---------------------S--------------------S-------------------------------------
-----------------------------S------S---------S-------S------S--S-------SS--SS--
----------------------------------------------S--------------------------S------
--S----------S-----------------S----S--S------S----------------S----------------
--S----------------------------S-------------------------------------SS-S----S--
-------------------S--------S-------------------S-----------S----S---S----------
------S--S------S------------------S----S------------S--S-----S-------S----SS---
-------------------------------S---------------S-------------------------------
>forward_587
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-------AAAACCACTTGTGCACCAGC-----------------------------------------------------
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>reverse_2285
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--------------------------------------------AGGTGCTTCTCGACACACTG----------------
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