>input_sequence_64489
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-----------------------------------------------------------ATGGCGGCGGCAGTGCAGGTC
TGGTTCGTCTCCCTGGCCGGATTAGGCGCCATGTACCTGTCCGCTGCCTGCCTCCGTCTCCTTGCCCACCTCGCCCTCTG
CCTCCGCCGGCCCATCAACCTCCGCCGCCACTACGGCTCGTGGGCGGTCGTTACCGGCCCAACCACGGGGCTAGGCCGAT
CCATGGCCATGGAGCTCGCCCGCCGTGGCATCAGCCTCGTCCTCCTCGACCTCGACGCGGCCAACCTGCAATACGTCTCG
GCTGCCCTCCACGAGGCCCACCCCGGGGTGGAGACCAAGACCGTGGTATTCGACCTCTCTCTCGTCGGCACCGCCGCCGG
CGACGAGGCGATGGGGCGGCTCAAAGAGGCCACAGAGGGGCTGGACGTGGGGCTACTGGTGAACAACGCCGCCGTGAATC
GGCCGGGCGCGCTGTACGTCCACGAGGCGGACGTGGAGCGGCTGGCGAGGATGGTGCTGGTGAACGTGATGGCGCTCACA
GAGGTGACGGCGGCAGTGCTGCCGGGGATGCTGGAGCGGGGGAGGGGCGCCATTGTCAACGTTGGGTCCGGGTCCACGGT
GGCCGTGCCCTCCTTCCCGCTCTACACCGTCTACAGCGCCACAAAACGGTACGTGCAGCACCTGACGCGGTGCCTCAGCG
TGGAGTACAAGCACAGGGGCATCGACGTGCAGTGCCAGGTCCCGTTCTACGTGCACACCGGCATGCTGTCGCCGGCAATA
AAGGCCACCATGACGTTCCCGGCGTTCGTGGCGACCGCCGACGCGTACGCCCGGGACGCGGCGCGGTGGATCGGCCACGG
TGTGCTCTGTGTG---CCCGACGCGTCCCAGCAGCTGCAGTGGTTCCTCGCCGGCCTTGTCCCCGACGCAGTTCACGACT
GGTACCGCCTCCGGCAGCATCTCAAGCACAGGGCCATCCTCCGGCCGAAGCTCGCGTGA---------------------
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>chr2A_1_TraesCS2A01G486900
AATCTCATTGAAATTTCTGAAGTTTCAATCATTTACACAGATACTAAGATAGTTGCCTTTTGGTCAAAATATTTCTATCA
TTACAGTAGAACACATGGATTCAAATTATTTCAAAAATTCAAAATACTTGGTCATATTGTTACCGAAATCAAGTGAAATG
TTTGGTCATTTGGTCGAATTGAAAACTGAAATTACTTCATTTACCGTGTTATGCGACCAATAATTTTTGGCCAACACTTT
TCATTACTAGCAAGTGGGTCCCGTGCGTCAGCATCTTATTGAATATATTGTCTTCTTCTCATCTCCGTCCGATCCCCACA
AGCTCTGACGATGATGTGCTCTGGTGTGGTGTAAGAGCGTGTGTAATAGTATTGCCTAACAACTGGCTATATGGAGTTAT
CATGTTACATATAGTCAATCTAATATCCAACATGTATGATAGCTACTCCCTTCGTTCATAATATAAGAGCATTTTGCAAG
CTATGGGACGAAGGGAGTAGTTGCTAAGTAGTACTACTTTATTAATGCATGACCCGTCATACACTCTCATAATGTTTTTT
GGAGTTCGCCTTGCAGCCGTCTGTTAATCTAAAATTAGCTTCCTTTTTCTTTCCTCTTCTCTCTCATCCAAGTCAACACA
AATATAATTATTTAATCCTTATAACCAGCTGACTATATCTTATTAAACATGCTCTAAGATGAGTTAGTTGCAATTAAAGT
GATTGCTTTCTTGCCTCAGACTGACTCCATCCTATATTTTTTTCGTCTCATGTCTAGATACATTCATATAAGACAAATTT
AAGATAAATAATTTGGGACGAAGGTAATAGTTGCTTGTCACATTGATTCAGTTATTCTAGAGAACACC--AATGTCGATT
GGTGTGATTGCGGGCCA--------CGATCCATAACGGTGATTGGG-TT------GATGGGAAGAAGAGATATATAGGGG
CCACTGGGG-CAGCATGGAGTAGCAAACTAATTCCGAGCGGTCGGAGCTAGCTGC-GACATGGCGGCGGCAGTGCAGGTC
TGGTTCGTCTCCCTGGCCGGATTAGGCGCCATGTACCTGTCCGCTGCCTGCCTCCGTCTCCTTGCCCACCTCGCCCTCTG
CCTCCGCCGGCCCATCAACCTCCGCCGCCACTACGGCTCGTGGGCGGTCGTTACCGGCCCAACCACGGGGCTAGGCCGAT
CCATGGCCATGGAGCTCGCCCGCCGTGGCATCAGCCTCGTCCTCCTCGACCTCGACGCGGCCAACCTGCAATACGTCTCG
GCTGCCCTCCACGAGGCCCACCCCGGGGTGGAGACCAAGACCGTGGTATTCGACCTCTCTCTCGTCGGCACCGCCGCCGG
CGACGAGGCGATGGGGCGGCTCAAAGAGGCCACAGAGGGGCTGGACGTGGGGCTACTGGTGAACAACGCCGCCGTGAATC
GGCCGGGCGCGCTGTACGTCCACGAGGCGGACGTGGAGCGGCTGGCGAGGATGGTGCTGGTGAACGTGATGGCGCTCACA
GAGGTGACGGCGGCAGTGCTGCCGGGGATGCTGGAGCGGGGGAGGGGCGCCATTGTCAACGTTGGGTCCGGGTCCACGGT
GGCCGTGCCCTCCTTCCCGCTCTACACCGTCTACAGCGCCACAAAACGGTACGTGCAGCACCTGACGCGGTGCCTCAGCG
TGGAGTACAAGCACAGGGGCATCGACGTGCAGTGCCAGGTCCCGTTCTACGTGCACACCGGCATGCTGTCGCCGGCAATA
AAGGCCACCATGACGTTCCCGGCGTTCGTGGCGACCGCCGACGCGTACGCCCGGGACGCGGCGCGGTGGATCGGCCACGG
TGTGCTCTGTGTG---CCCGACGCGTCCCAGCAGCTGCAGTGGTTCCTCGCCGGCCTTGTCCCCGACGCAGTTCACGACT
GGTACCGCCTCCGGCAGCATCTCAAGCACAGGGCCATCCTCCGGCCGAAGCTCGCGTGATATCACTCGTCATGTGTACAT
TCATG------------CATGGTCGCTGGCCGATCTGGACTTATCATATGGATTATGGAGGCAGCTTAAAATCATGCGTA
TATGCATTC-CGATCAAATTTCGTGCAATTCTAAAGCATGACATATGCATGGTTATGGTAATGGTGTACTTTGGATAAAG
AAAAATAAAACGGGAAAATGTATATGTCGTTGGGTCAATTTTCATCTAAATTATACCAAGATGTATGCTAATTAATAATC
CGCTCTTTGTACCACGTGACACATGTGGTAAGCAATCCAAATTATTGAAAAAATAATAATTCGCTCTTTGTATACTGCTC
AACTCCCTTCCTTCTTATTTGTAAGACGCACGTGTATCTTTATATCCTCAATTTGATCAACGCAATATGTGTTATATATC
ATACTTCCTTAATTTCTTTATACAAGGCCACAAACTCAGATTATACAATACCAAGATAAAATTTAATGACTATATTTTGC
AAGCCAACTTTTCTGTTGGTTAACCGGGACCATCAATACGCCGCAAGCATGCAAGGAAGGAATGGGAAAGAAGTAGCTTA
TGTCCTTTTTATATCGCATATAAGAATTGTCTGAAGCCAAACTTTGTAAAGTTTGACCATATTTATATGGAAAATTATCG
ACATCTACAATACTAAGATTATATAATATGAAAATTAAATTCATGATGCATCTAACAATATTGATTTTGTATTGTAAATT
TTAGTATATTTTTCGATAAAGTTGGTCAAAATCACGAGTTTGACTTCAAACAAATCTTATATGCGGAGTAAAGAGGACCG
GAGGGAGTACGAGGAAACATCATTAATTTTTGCTTCGTTTATTGTTATCGACCTTGTATAGATGCAAATTGTATTTTTTT
TATAGTGACCTTGTATAAGGGAATGGAGGGAGTAATAAACTGCTTTGTAAATGAATTTAATGGCATATGTATAGGATATA
ACTATTTTGTTCCCAGTAAAAGAATACTGCCG
>chr2D_819
CGAAGGGAGTACT-------------------------------------------------------------------
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------------------------------TTGCTTGTCACATTAATACAGTTGTTCTAGAGAATATCATAATGTCAATT
GGTGTGATTGCGGGGAGAGTCGCTGCGATCCATAATGTTGATTGGG-TACACCTAGATGGGAAGAAGAGATATATATAGG
GGTCACTGCCCAGCATGGAGTAGCAAACTAATTCCCAGCGGTCGGAGCTAGCTGC-GAAATGGCGGCGGCAGTGCCGGTT
TGGTTCGTCTCCCTGGCCGGACTCGGCGCCCTGTACTTGTCCGCTGCCTGCCTCCGTCTCCTCGCCCACCTCGCCCTCTG
CCTCCGCCGGCCCATCGACCTCCGCTGCCACTACGGCTCGTGGGCGGTCGTTACCGGCCCAACCACGGGGCTAGGCCGAT
CCATGGCCACGGAGCTCGCCCGCCGTGGCATCAGCCTCGTCCTCCTCGACCTCGACGCGGCCAACCTGCAATCCGTCTCG
GCTGCCCTCCACGAGGCCCACCCCGGGGTGGAGACCAAGACCGTAGTGTTCGACCTCTCTCTCGTCGGCACCGCTGCCGG
CGACGAGGCGATGCGGCGGCTCAAGGAGGCCACAGAGGGGCTGGATGTGGGGCTACTGGTGAACAACGCCGCCGTGAATC
GGCCCGGCGCGCTGTACGTGCACGAGGCGGACGTGGAGCGCCTGGCGAGGATGGTGCTGGTGAACGTGATGGCGCTCACG
GAGGTGACGGCGGCGGTGCTGCCGGGGATGCTGGAGCGGGGGAGGGGCGCCATTGTCAACGTCGGGTCGGGGTCGACGGT
GGCCGTGCCCTCCTTCCCGCTCTACACCGTCTACAGCGCCACGAAACGGTACGTGCAGCACCTGACGCGGTGCCTCAGCG
TGGAGTACAAGCACAGGGGCATCGACGTGCAGTGCCAGGTCCCGTTCTACGTGCACACCGGCATGCTGTCGCCGGCAATA
AAGGCGACCATGACATTCCCGGCGTTCGTGGCGACCGCCGACGCGTACGCCCGGGACGCGGCGCGGTGGATCGGCCACGG
CATGCTCTGCGTG---CCCGACGCGTCCCAGCAGCTGCAGTGGTTCCTCGCCGGCTTTGTCCCCGACGCCGTTCACGACT
GGTACCGCCTCCGGCAGCATCTCAAGCACAGGGCCATCCTCCGGCCGAAGCTGGCGTGATACCACTCGTCATGTGTACAT
TCATGCATGCGCATGCGCATGGTCGCTGGCCGATGTAGACCTATCATATGGATTATGGAGGCAGCTTAAAATCATGCGTA
TATGCATTCTCGATCAAATTCCGTGCAATTC-------------------------------------------------
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>chr2B_825
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------------------------TAATAGTTGCTTGTCACATTAATTCAGTTATTCTAGAGAACACC--AATGTCGATT
GGTGTGATTGCGGGACA--------CGATCCATAACGGTGATTGGGGTT------GATGGGAAGAAGACATATATAGGGG
TCAGTGGGG-CAGCATGGAGTAGCAAACTAATTCCGAGCGGTCGGAGCTATCTGC-GACATGGCGGCGGCAGTGCCGGTC
TGGTTCATCTCCCTGGCCGGACTCGGCGCCCTGTACCTGTCCGCTGCCTGCATCCGTCTCCTCGCCCACCTCGCCCTCTG
CCTCCGCCGGCCCATCGACCTCCGCCGCCACTACGGTTCGTGGGCGGTCGTTACCGGCCCAACCACAGGGCTAGGCCGAT
CCATGGCCATGGAGCTCGCCCGCCGTGGCATCAGCCTCGTCCTCCTCGACCTCGACGCGGCCAACCTGCAATCCGTCTCG
GCTGCCCTCCACGAGGCCCACCCCGGAGTGGAGACCAAGACCGTAGTGTTCGACCTCTCTCTCGTCGGATCCGCCGCCGG
CGACGAGGCGATGCGGCAGCTCAAAGAGGCCACAGTGGGGCTGGACGTGGGGCTACTGGTGAACAACGCCGCCGTGAATC
GGCCCGGCGCGATGTACGTGCACGAGGCGGACGTGGAGCGGCTGGCAAGGATGGTGCTGGTGAACTTGATGGCGCTCACA
GAGGTGACGGCGGCGGTTCTGCCGGGGATGCTGGAGCGGGGAAGGGGCGCCATTGTCAACGTCGGGTCCGGGTCCACGGT
GGCCGTGCCTTCCTTCCCGCTCTACACCGTCTACAGCGCCACAAAACGGTACGTGCAGCACCTGACGCGGTGCCTCAGCG
TGGAGTACAAGCACAGGGGCATCGACGTGCAGTGCCAGGTCCCGTTCTACGTGCACACCGGCATGCTGTCGCCGGCAATA
GAGGCGACCATGACATTCCCGGCGTTCGTGGCGACCGCCGACGCGTACGCCCGGGACGCGGCGCGGTGGATCGGCCACGG
CGTGCTCTGCGTG---CCCGACGTGTCCCAGCAGCTGCAGTGGTTCCTCGCCGGTCTTGTCCCCAACGCCGTCCACGACT
GGTACCGCCTCCGGCAGCATCTAAAGCACAGGGCCATCCTCCGGCCGAAGCTCGCGTGATCATCACTGTCATGTGTACAT
TCATGCATGCGCATGC--ATGGTGGCTGGCCGATGTGGACCTATCATATGGATTATGGAGACAGCTTAAAATCATGCGTA
TATGCATTCTCGATCAAATTTCGTGCAAT---------------------------------------------------
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>chr2A_979
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------------------------------------AGAGGCCGGAGCTAGCTGGGGAAATGGTGGCGGCAATGCCGGCC
TGGTTCATCTCCCTAGCCGGACTCGGCGCCCTGTACTTGTCTGCCGCCTGCCTCCGCCTCGTCGCCCACCTTGCCCTCTA
CCTCCGCCGGCCAATCGACCTCCGACGCCGCTACGGCTCTTGGGCGGTGGTCACCGGTCCAACCACGGGGCTCGGGCGAT
CCACGGCCATGGAGCTCGCCCGCCGGGGCATCAGCCTCGTCCTCCTCGACCTGGACGAGGCCAACCTCGATCAAGTCGCC
GACACCATCCGCAAAACCCACCCCTGCGTGGAAGCCAAGACCGTGGTGTTCGATCTCTCCCTCGTCGGAACCCCTGCCGG
CGACGAGGGGACGCGGCGGCTCAGGAAAGCAATCAAGGGGCTGGACGTGGGGATGCTGGTGAACAACGCGGCCGTGAACC
GGCCGGGCGCGCTGTATGTTCATGAGGCGGACATGGAGCGGCTGGCGAGGATGATACTGGTGAACGTGATGGGGCTCACG
GAGATGACGACGGCGGTGCTTCCCGGGATGGTGGAGCGAGGGAGGGGCGCCATTGTTAACGTCGGGTCGGGGTCGACGGT
GGCCGTGCCCTCCTTCCCGCTCTAAACCGTCTACAGCGCCACAAAACGGTACGTGCAGCACCTGTCGCGCGGCCTCGACG
CGGAGTACAAGAGCAAGGGCATTGACGTGCAGTGCCAGGTCCCCTTCTACGTGCACACCGGCATGCTGTCTCCGGCGATC
AAGGCGACCATGACCTTCTCGGCGTTTGTGGCCACCGCCGACGAGTACGCCCGGGACGCGGCGCGTTGGATCGGACACGG
CGGCGCGCTGTGCATACCCGACGCGTCACAGCAGCTGCAGTGGTTCCTCGCCGGCCTCCTGCCGAGCTTCGTCCACGACT
GGTACCGCCTCCGCCAGCACCTCAAACACAGGGCCATCCTCCGGCGGAAGCTCGCGTGA---------------------
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>SNPs
SSSSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS--------------------S-----------------------------------
--------------S-----------------------------------------------------------------
S--------------------------------------------------------------------------S----
---------------------S-S------S-------------------------------S-----------------
----------------S---------------------------------------------------------------
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-------------S------------------------------------------------------------------
-------------------S------------------------------------------------------------
--------------S-----------------------------------------------S-----------------
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-----S--------S-----------------------------------------------------------------
S--------S-----------------------------------------------------------S----------
-------------------------------------------------------------S------------------
----------------------------------S-----S---------------------------------------
-------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_498
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------------------------------------------------------------------------------AG
CTATGGGACGAAGGGAGT--------------------------------------------------------------
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>reverse_2493
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------------CTGTTGGTTAACCGGGACCA------------------------------------------------
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