>input_sequence_64480
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------------------------------------------ATGGTGACCGAACAATCCCGATACGGCTACAGGAAGTT
GATGGTAAGCTACGGCGGGAAGCTCCAGCGCTTCTCCGAAGGCGGCGGACCGCAGTACATCGGCGGCGAGCACCAGGTCG
TGAGGGTCAGCCAGTCCATCTCGCTGCAGGAGCTCCGCGACCGGCTGGCCACGGCCGTGGGCTGTTTCAACATCGCTATC
CAGTACGTCCGCCCCGGCGAGCCCCTGGACGCGCTCCACGATGTGGTGACCGCCGGCGACGTCCGGGACCTGCTAGACTG
GGTGCTATACCGGGACATCCATATCAAACTGCTCTGCGCAAACCCAGCGGACGTCCCCCAAGTCCGGGTCTTCGTGGTCC
GCGTGGATGGGCGGCCGCCGCTCCCCGAGGCGCTCTTCACTCCCGCTCCAAGCACGCCGGTCGCGGCGCCCACCGAGGCG
CCGGTGTCTCTGTCCTCGCTCAAGCGGCGAAGTGCGTCGGCGCCTTCGCTGTCCACAAAGTTGCCGGACGGCACGTCGCA
GCCCCTCTCTCCGGCCCTCATCCATCGGAGCGTATCGGCGCCTTCGCTGTCACCGCCGTCGACCGGGGACGACACAACGT
CTTCGACTACGACA--------------------------------------------------------------ACTG
CCGGAAGCACCCGTGCGAACCAAGATGTCGCCCCCAACGCGGCAATGCAGAGGAGTCTGGCGCGCCCGGCTCCGGTGTTC
CTGGTGCCAGTAGCGCCGGTCATAGTGTACCAGCCGGTGATCCCAGTGTACCAGGTGTTCGTCGTGCGTGATTGTGCTGT
TCACCGCCTCAATCAGATCAGGTAAATTTCACCGACTAATCATCGCATAGAGAGTGGTACAAACGTTATCGTCTTTTGAT
AAAAGAAAGTGTATTCTTATATGCAGGTGTCTACCAATTAGCTATGATATGAACAGTATTACTGAAGCCGCAGTACAAGG
AGCCAACGAAGCTTTGGCGTGA----------------------------------------------------------
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>chr2B_1_TraesCS2B01G288500
GGCGGCATAGCACGTTCAAACACAACCTTGTTGGGAGCTTGGAGCAAACCTCATATTGGGGTCACGGATCCATTCATCGG
TGAGACGCTCGCGCTCCGAGAAGGTGTTATCTTCGCAAATCTTCGGGGTTTCTCACATGTGATCATGGAGACGGATTGCC
TAGAGATTGTTAATCTCTGGAACACTCACCACACCAGCCTTTATGTGGTGGCACCTTTACTTGTAGAAATTGGAGAGCTA
GCTGCTACTTTTTCTTCTTTTGTTATTCAACATGTAATGCGAGCGGCCAATGTCCCGGCCCACCTTTGTGCAAAACATGC
ATGCACACTGGTGGTTACCGAGTGTTGGACGGACTCGAGACCATCTTTCCTGCTCACCAGCCTGTTGGCTGATGATGCCA
GGACCTTGTTCGTTGAATAAAAGCTCTCACGTTTGAACGCAAAAAAAGAGTACCACCCTGCATCTATCCTTTTTTTTGCG
GGGAAATTCAGAGAGCTTTATTGAGTAAACGTATTCTTGGGACAATCAGCCAGAAGGCTGGACACCAAGAAGCTAGGAGT
CTCGTCAAGTCAACTATCGGTCACATTAAGTGTGCAGGCATGTTTGGCACACAAGTGAGCCGGTAAATTGGCTGACCTGA
TTACATGTTGAATAACAAAAGAGGAAAATTGAGTACTAAGCTCTCCAATCTCTAAAAGTAAAGGAGCCATAATTGAACGA
GAATTGTGACGAGTGATAATGGAAGTCGATTGCTTGGAGTTGGTGACACTCTGCACCCTGCACCTATCCGCCGTAGCCTC
TTGCCACACGTTGTATTCTTCTACGACGAAGTACCACCCTCCATGTGTCCGCTTCGGATAAGTGGCCCGAGTTCAATGCA
AGCCCGTTCAACAGACCGGCTGTCTGGTA--ACGATGAAAACGTGGAAGGGATACAGCTCGGTCCCTCTCCCTCGTACTA
CCTGGATTGGAAGTTCGAAACTCGCTCGACAACATCTGCGCCATGGTGACCGAACAATCCCGATACGGCTACAGGAAGTT
GATGGTAAGCTACGGCGGGAAGCTCCAGCGCTTCTCCGAAGGCGGCGGACCGCAGTACATCGGCGGCGAGCACCAGGTCG
TGAGGGTCAGCCAGTCCATCTCGCTGCAGGAGCTCCGCGACCGGCTGGCCACGGCCGTGGGCTGTTTCAACATCGCTATC
CAGTACGTCCGCCCCGGCGAGCCCCTGGACGCGCTCCACGATGTGGTGACCGCCGGCGACGTCCGGGACCTGCTAGACTG
GGTGCTATACCGGGACATCCATATCAAACTGCTCTGCGCAAACCCAGCGGACGTCCCCCAAGTCCGGGTCTTCGTGGTCC
GCGTGGATGGGCGGCCGCCGCTCCCCGAGGCGCTCTTCACTCCCGCTCCAAGCACGCCGGTCGCGGCGCCCACCGAGGCG
CCGGTGTCTCTGTCCTCGCTCAAGCGGCGAAGTGCGTCGGCGCCTTCGCTGTCCACAAAGTTGCCGGACGGCACGTCGCA
GCCCCTCTCTCCGGCCCTCATCCATCGGAGCGTATCGGCGCCTTCGCTGTCACCGCCGTCGACCGGGGACGACACAACGT
CTTCGACTACGACA--------------------------------------------------------------ACTG
CCGGAAGCACCCGTGCGAACCAAGATGTCGCCCCCAACGCGGCAATGCAGAGGAGTCTGGCGCGCCCGGCTCCGGTGTTC
CTGGTGCCAGTAGCGCCGGTCATAGTGTACCAGCCGGTGATCCCAGTGTACCAGGTGTTCGTCGTGCGTGATTGTGCTGT
TCACCGCCTCAATCAGATCAGGTAAATTTCACCGACTAATCATCGCATAGAGAGTGGTACAAACGTTATCGTCTTTTGAT
AAAAGAAAGTGTATTCTTATATGCAGGTGTCTACCAATTAGCTATGATATGAACAGTATTACTGAAGCCGCAGTACAAGG
AGCCAACGAAGCTTTGGCGTGAAGAACGAAACTGCTCCGTGGACGACGAATGCATGCACGACAGCGGCACGATGGGCCAT
ACAGCCGTTGATATGCGCTCGATGATATGCATGAACGACTTGATATGTGATGTCGTGCATGAATCGTCCGCATGGCGTCG
TGTGCATAGCAGCGCTGCGTGAAGAAACTCAATCACAAGTTTATTATTATTAGTGTTTTGGATTTGGATGACGCAAGTGA
TAGCTTTTGAGTACTCCCTCTATAAAGGAATTATAAGAGCGTTTAGCTGACAATGACCATCCTATTTGGTCCATGTGTTT
AAATTGTCCTCCTTTGGTCAATGTCAAAGTTTGATCTTTTACTTTTCCTTTGTAAAAAGGTTTGATCTCTTTTTAGTAAA
CAATGTGATAAATTTGTTTATATGTATCTAACATGCAGAGGTCAGGGTAATAAAACATTTCAATGTCTTAGAAATAAAAA
TAGTACAAGTACTCTCAAACTAAAATATACTACTCCCCCACTTCCAAAATAGGTGTCGTGAAACCACAACACTTATTTTG
GAACAGAGGGAGTACTTAGTTAA--TCTCTCTCAATCTTTCCTTTCTCCTCTTCTTCTATTACCTCTCATCCCTGTGGAC
T--AGTCCAGGTGTGTGGCGTTTTACCAATAGGGAAAATGTTG-------TTTTACCAAATGAAATTTTCAATTTGTCGT
GAGGAAATATTTACACGCTAGACCTCCCCTCACCTCTACCTTCTGAAGAAGTGAAGAAAGTCATAAGAAATAGGAAGGAA
ATCGAATTTATTACTGAAACAAGTATGCATCAAAACCATCTAACCTGGTAATAACAGATTTATATTTTGGGGTTCTATTC
ATATGTATCTTGAGTATTTCAGAACATAGGAGTATCAGATATGAATATAGATATCACCCAATCCCAATATTCAGAGAGTA
TTAATTTTGTAACGTGAGATTTAATTACTCTTTGCACACATACATG-----GTTATTTTATTTACTAATTTTATGTTA
>chr2D_774
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-----------------------------------------------------CACCCTGCACGTATCCGCCGTAGCCTC
TTGCCACACGTTGTATTCTTCTACGACGAAGTACCACCCTGCATGTGTCCGCTTCGGATAAGTGGCCCGAGTTCAATGCA
AGCCCGTTCAACAGACCGGCTGTCTGGTATAACGATGAAAACGTGGAAGGGATACAGCTCGGTCCCTCTCCCTCGCACTA
CCTGGATTGGAAGTTCGAAACTCGCTCGGCAACATCTGCGCCATGGCGACCGAACAATCCCGATACGGCCACAGGAAGTT
GATGGTAAGCTACGGCGGGAAGCTCCAGCGCTTCTCCGAAGGCGGCGGACCGCAGTACATCGGCGGCGAGCACCAGGTCG
TGAGTGTCAGCCAGTCCATCTCGCTGCAGGAGCTCCGCGACCGGCTAGCCACGGCCGTGGGCTGCTTCAACATCGCTATC
CAGTACGTCCGCCCCGGCAAGCCCCTGGACGCGCTCCACGATGTGGTGACCGCTGGCGACGTCCGGGACCTGCTAGACTG
GGTGCTATACCGGGACATGCATATCAAACTGCTCCGCGCAAACCCAGCGGACGTCCCCCAAGTCCGGGTCTTCGTGGTCC
GCGTGGATGGGCGGCCGCCGCTCCCCGAGGCGCTCTTCACTCCCGCTCCAAGCACGCTGGTCGCGGCGCCCACCGAGGCG
CCGGTGTCTCTGTCCTCGCTCAAACGGCGAAGTGCGTCGGCGCCTTCGCTGTCCGCAAAGTTGCCGGACGGCACGTCGGA
GCTCCTCTCTCCGGCCCTCATCCATCGGAGCGTATCAGCGCCTTCCCTGTCGCCGCCGTCGACGGGGCACGACACAACGT
CTTCGACTACGACGACAACTGCCAGAGCACCCTGTCGCCGCCGTCGACGGGGGACGACACAACGTCTTCGTCGAAGACTG
CCGGAAGCACCTGTGCGACCCAAGATGTCGCCCCCAACGCGGCAATGCAGAGGAGTCTGGCGCGCCCTGCTCCGGTGTTC
CTGGTGCCAGTAGCACCGGTCATAGTGTACCAGCCGGTGATCCCAGTGTACCAGGTGTTCGTCGTGCGTGATTGTGCTGT
TCACCGCCTCAATCAGATCAGGTAAATCTCACCGATTAATCATCGTATAGAGAGT---ACAAACGTTATCGTCTTTTGAT
AAAAGAAAGTGTATTCTTATATGCAGGTGTCTACCAATTAGCTATGATATGGACAGTATTACTAAAGCCGCAGTACAAGG
AGCCAACCAAGCTTTGGCGTGAAG--------------------------------------------------------
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-------------------------AACTCAATCTCAAGTTTATTATTATTAGTGTTTTGGATTTGGATGCCGCAAGTGA
TAGAGTTTGGAG-------------------TATAAGAACGTTTAGCTGGC-ATGACCATCCTATTTGGTCCATGTGTTT
AAATTTTCCTCCTTTGGGCAATGTCAAAGTTTGATCTTTCACTTTCCCTTTGTAAAAAAGTTTGATCTCTTTTTAATAAA
CAATGTGATAAATTTGTTTATATGTATCTAACATGCAGAGGTCAGGATAATAAAACATTTCAATGTCTTG--AATAAAAA
TAGTACAAGTACTCTCAAACTAAAATATACTATT------------------------------CACGACACTTATTTTA
AAACGGAGTGAGTACTTAGTTAATCTCTCTCTCAATCTTTCCTTTCTCCTCTTCTTCTATTACCTTTCATATCTGTG---
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>chr2A_2418
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-AGTACAAGTACTCTCAAACTAAAATATACTACTA---CACTTCCAAAATAAGTGTTGTGA------------------G
GAACGGAGGGAGTACTTAGTCAA--TTTCTCTCAATCTTTCCTTTCTCCTCTTCTTCTATTACCTTTCATCCCTGTGGAG
TAAAGTCCAGGTGCGAGGCGTTTTACCAATAGGGAAAATGTTTTTTTTTTTTTTACTAAATGAAATTTTCAATTTGTCAT
GAGGAAATAT-TACACGCTAGACCTCCCCTCACCTCTGCCTTCTGAAGAAGTGAGGAAAATCATAAGAAATAAGAAGGAA
ATCGAATTGATTACTGAAACAAGTATGCATCAAAACCATCTAACCTGGTAATAACAGATTTATATCTTGGGGTTCTATTC
ATATTTGTCC-GAGTATTTGAGAACATAGGAGTATCAGATATGAATATAGCTATCACTCAATCCCAATATTCAGAGAGTA
TTAATCTCGTAATGTGAGATTTAATTACTCTTTATACACATACACCACATAGTTATTTTATTTACTAATTTTATGTTA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S----------------
----------------------------------------S---------------------------------------
---------------------------------------------------------------------------S----
----------------------------S-----------------S----------------------S----------
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----S-----------------------------------------S-----------------S---------------
------------------S----------------------------------S--------------------------
------------------S---------------S---------------------------------------------
---------------------------------------------------------S----------------------
-----------------------S------------------------------S-----------------------S-
--S---------------------------------S--------S-----S-----------S---S------------
-------------S------------------------------------------------------------------
-----------S------S------------------------------------------------S------------
--------------S-----------------------------------------------------------------
---------------------------S-------S---------S---------SSS----------------------
---------------------------------------------------S-----------S----------------
-------S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS---------S-----------------------------------S---------
---SS----SSSSSSSSSSSSSSSSSSSSSS-------S----------S-S----------------------------
-----S-----------S---------------------S-----S------------S----------------S----
----------------------------------------------S----------------------SSS--------
----------------------------------SSSS-------------S----S----SSS---S------------
----S------------------------------------------------------------S-------------S
-------------S-S--------------------------S-------------S---------------------S-
----------S--------------------------S----------------S----S------------S-------
--------S--------------------------------------------------------S--------------
----S-S--SS--------S------------------------------S------S----------------------
-----S-S----S--------------------SS---------SS--------------------------------
>forward_351
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-----------TGGTTACCGAGTGTTGGACG-------------------------------------------------
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>reverse_2080
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-------------------------------------------------------------------------------T
ACAGCCGTTGATATGCGCT-------------------------------------------------------------
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