>input_sequence_64479
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--------------------------CCC---ATACAGCTCTATCGATCGTCGCCGGGAGAGGAGAGAA-----------
-CGTTCCATTTCATTCCATCCCACCCTTCCAAGTTCGGAT-----------------------CCATGAAGGTC------
----------------ACTGGCATTTCTTGATTTCTCTTGTGATTTTTTAACTGCGC--CT-CCTGAGGTACGTAGTGGT
GAATTAGTTTGATCGGTTAGTTGT-----ATGACGGCTGCAGAAGATCGTGGTGAAGCTGGAACTGCAATGCGACAGGCA
GAAGCAGAAGGCGATCAAGACAGTCTCCACTCTTTGTGGTGACTTACTTATTACTCTCCTACTTTTCTCTGAATCCGCCC
GGCATTCT-----------------------------TCCTCGTAAACATGCATGCACTGAGGCCACTCACTCATCCACG
TACCATACCTCAGTTTGGCGCTTCTGACGACGACAACCGTGG----CTTTCT----TCCCCAGGTATCGACCAGATCGTC
GTGGACACGAAGGACGGCAAGA---------TGGGCACGGTCGACCCCGTCCACGTCGTCTGCAAGCTGCGCAAGCGCTT
CTGCTCGGTGTGGATAGTCTCCGTCGGCCCGGCCAAGGAGGAGAAAAAGAATGGCGACAATGAGGGCAAT---AAGACGG
ATGTCAACAAGGAGAAGACGAACGGCA------GCGGGGACAAGACGGACGGCAACACGAAGGGCGCGTGCACGCCCATC
CCAGTGTGCCAGCCGTGC---------------TACCCGCCGCACTGGTACCCGCAGCCGTGTTACC------TCGTCCA
CACCGAGGAGCACCCCCACGAGTACGCGTGCGTCATCTGCTGATCGATGCACATTTTGTAGCCAGC--------------
-----------------CGATTGATCGGGACTCATCAGCCTAGCTGCACCGGTGATCGACGGCGTGCGTTCTATCTATCT
ATGGC----------CGTGTGAGCTAGTACATATTTTACCGGTGATCCGGCA-----GCTGCGCATCTGCTGAGCTTTGC
CAGATATACGGAACTACAGTGTGGAGAAGAACTAAA----TAAACAAAACTGCTGCAT----------------------
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--------------------------
>chr2A_1_TraesCS2A01G538900
AGTTTGTAAAAGACCAGATGGTTTTTTCCTCAAAAAAAAAAGACCAGATGGTTTCTTTACATGAAAATCGGAGAGGACAG
CCTCTCTTC------CAATAATTAAAGAAAAAAA--ACAGCTGATCGTCAATGAGTAGTCCATGGACTAGAGCATGTGTT
CCGATCTGTGTGATGAAGCGAGGTTCAATGCATGTGTCCGGCCACAGCAAAGATAAGATCACCCGTCGCATCGCGAGCTA
CACATCCCTAATTAACACGTTTGTTTAAGAAGTGCAAGCAACTCTTATTCATTTCCTCACCCGAATTCCAAATCTGCAGG
GGTTGTCCCTCGATAC------------GTTTTCCTTCCAACGGAAGCTAGCGGTGGGCTGTCACCGCATG---CAGACG
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---------------------------------------------------------TGATGCGGAGGGTGAGGATTATA
GCTGGTTGAACCAAGATTAT----A--------GCGGCT-----------------------------------------
-----------AGGCTCCACCTCGTATACGTTGATCGACACGAGTGCTCGT--------AGTGTTGTGACCGCCGGTGCC
CGGGACGAAGCAAACTTCAGGCG---------GCCGAGCTTGCTTCGAGCTACCGCTATGCCGTCCAACCTCTCGTTTCT
CCTGGCATG----GTAGGTGATGGGTGGTTGGT-------------------CCGCACCGATGCACCATTTGAGGCTGCG
CGCCGTCGCTAGCTGTTGCAATACATTGCATCAGGC--------------------------------CGGACAAGGGAC
GTACTACTGGTCGTAACTACTTGT-------------------------ATTGACAGCCTAGCCCAACGCCAAATCGGTC
GGCCTACTTAGCTCACAA-GCCCAA--GTGTGTCAAGATACTACTCGCCGAGTCG--------CGATCGAGCCACCACGG
CCGGACCCGCCCCAAGACTCTGGCAG--------GTCGGTCGTCGTGGC----CATTTCCCGGCGCCACCGTACGTACGC
CCCTAGGT--------------CTCCACTCTCCAATAGCGCTTACACACGCCCTAGTCCCAGT-----------------
-----GTCCCACTGTCCCAAACTCCCAAAAACACACGG---A---GTAGTACGTGCCACGGGCTCTGCCTATAAACCCGC
CAGGCTCCGTCACTGGCTACTCCCATCCC---ATACAGCTCTATCGATCGTCGCCGGGAGAGGAGAGAA-----------
-CGTTCCATTTCATTCCATCCCACCCTTCCAAGTTCGGAT-----------------------CCATGAAGGTC------
----------------ACTGGCATTTCTTGATTTCTCTTGTGATTTTTTAACTGCGC--CT-CCTGAGGTACGTAGTGGT
GAATTAGTTTGATCGGTTAGTTGT-----ATGACGGCTGCAGAAGATCGTGGTGAAGCTGGAACTGCAATGCGACAGGCA
GAAGCAGAAGGCGATCAAGACAGTCTCCACTCTTTGTGGTGACTTACTTATTACTCTCCTACTTTTCTCTGAATCCGCCC
GGCATTCT-----------------------------TCCTCGTAAACATGCATGCACTGAGGCCACTCACTCATCCACG
TACCATACCTCAGTTTGGCGCTTCTGACGACGACAACCGTGG----CTTTCT----TCCCCAGGTATCGACCAGATCGTC
GTGGACACGAAGGACGGCAAGA---------TGGGCACGGTCGACCCCGTCCACGTCGTCTGCAAGCTGCGCAAGCGCTT
CTGCTCGGTGTGGATAGTCTCCGTCGGCCCGGCCAAGGAGGAGAAAAAGAATGGCGACAATGAGGGCAAT---AAGACGG
ATGTCAACAAGGAGAAGACGAACGGCA------GCGGGGACAAGACGGACGGCAACACGAAGGGCGCGTGCACGCCCATC
CCAGTGTGCCAGCCGTGC---------------TACCCGCCGCACTGGTACCCGCAGCCGTGTTACC------TCGTCCA
CACCGAGGAGCACCCCCACGAGTACGCGTGCGTCATCTGCTGATCGATGCACATTTTGTAGCCAGC--------------
-----------------CGATTGATCGGGACTCATCAGCCTAGCTGCACCGGTGATCGACGGCGTGCGTTCTATCTATCT
ATGGC----------CGTGTGAGCTAGTACATATTTTACCGGTGATCCGGCA-----GCTGCGCATCTGCTGAGCTTTGC
CAGATATACGGAACTACAGTGTGGAGAAGAACTAAA----TAAACAAAACTGCTGCATTTGGGTTTTAAAGGTCATTCGT
TATTACATGGTCCTTTTTTTTGCGGGAGAAAAGGAGATTCTCATTACTTACGGAGGCTTTTCAGCCAATGCCAAGTTTAC
GAAAAAAATCTAATCCCGAATGCCAAGTGCTACGGCCATACACGGCAAGTTCATGACTAACTTTATTCTGCGACCGACAA
CAACGAGTAAAAGAAATCTCCCTATCCCCAGTTGAGGCCAGATTCCGAATCTCCTTAACCAACATGTGATGTATCGATCG
ATCCTCGGAGTGTGTTGTGATCAGTGATACCGCCTCCGCGCTATCAAGCTCGATCAAAATGGGCAGCACCGTACGATGGA
GGGCCAGCTCCAGCACCTCCCGACACGCCGCTAGATCAGCGTCCACCGCGTTATCACATATACGGATTTCCCGACAAGCG
CTATAGATGATATCACACTAGTAGAAAAGGAGGCTTTGGTCCAGGCCGGGTAAGCCCATTAATCCCGGTTCAGTTCAAAA
CCAGGACCAATGGATGCATTTATCCCGGTTCGTGCGGCTAAGGCATTAGTCCCGGTTCACCTGGGCCCTTTAGTCCCGGT
TCATGCCACGAACCGGGACTAAAGGGTGCGATGCCCATTAGTCCCGGTTGGTGGCATCAACCGGTACTAAAGGTTAGACC
TTTAATCCCGGTTGGTGCCATCAACCGGGACTAATGGGCTTTAAGGCATTAGTACCGGTTCATGGCACGAACCGGTACTA
AAGGTCCCATTTTCAAACTC-CCCCCCC----CC-CCGGTGGACCGCCTTTTTAGTTTTAGAAAAAACAAAAGAAAATGA
TGGAAATGTCAA-AAAAATAAAATAAAATAAGTTTCCCATGTGATATGTGGTCTAGTTGTTGAG-AAATTTACAAATATG
AATTTCGACTTTATTTACAAAATCTCTCTGGAATTTGTAAAATGGGCATAACTTTTGCATACGAACTCGGATTAAAAAGT
TTTTTATATGGAAAATCATCTACTCG
>chr2D_38
-------------------------------------AAAAGACCAGATGGTTTCTTTACATGAAAACCGGAGAGGACAG
CCTCTCTTC------CAATAATTAAAGAAAAAAAC-ACAGCTGATCCGCAATGAGTAGTCCATGGACTAGAGCATGTGTT
TC--TCTGTGTGATAAAGCAAGGTTCATTGCATGTGTCCGGCCACAGCAAAGATACCATCACCCGTCGAATCGCGAGCTA
CACATCCCTAATTAACACG-TTGTTTAAGAACTGCAAGCAACTCTTATTCATTTCCCCACCCGAATTGCAAATCTGCA-G
GGTTGTCCCTCGATACATTCTATGTTATGTTTTTCTTCCAACGGAAGCCAGCGGTGGGCTGTCACCGCAGACGACAGACG
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---------------------------------------------------------TAATGCGGAGGGTGAGGATTATA
GCGGTTTGGATGGTCTTTATGTGCGACGGACATGCGGCT-----------------------------------------
-----------AGGCTCCACCTCGTATACATTGATCGACACGAGTGCTCGT--------AGTGTTGTGACCGCCGGTGCC
CGGGACGAAGCAAACTTCAGGCG---------GCCCAACTTGCTTCGAGCTACCGCTAAGGCGTCCAACCTCTCGTTTCT
CCTGGCATGCATGGTAGGTGATGGGTGGCTGGT-------------------CCGCACCGATTAACCATTTGAGGCCGCA
AGCCGTCGCTAGCTGCTGCAATACATTGCATCAGGC--------------------------------CGGACAAGGGAC
GTAACTACTTGCA-------------------AACGAGCGAGCGACAGCATTGACAGCTTAGCTCACAAGCCCG------
---------------------------GTCTGTCAAGATACTACTCGCCGAGTCG--------CGATCGAGCCACCCCGG
CCGGACCCGCACCAAGACTCCGGCAG--------GTCGATCGCCGTAGC----CATTCCCCGGCGCCACCGTACGTACGC
CCCTAGGT--------------CTCCACTCTCCAATAGCGCTTACACACGCCCTAGTCCCAGT-----------------
-----GTCCCAGTGT-CCCAGCTCCCAACAACACACGGAACA---GTACTACGTGCCACGGTCTCTGCCTATAAACCCGC
CAGGGTCTGTCACTGGCTACTCCCACCCATATATACAGCTCCATCGTCGCCG---------GGAGAGAAGACACCGCGCG
CGCGCGC--TTCATCCTATCGCACCCTCTTCCAAATTCGTG-------GAGGATCGATGGCCGCCATGAAGGTCATTGCT
TACCATAGCCGATCGAAGTGGCATTTCTTGATTTCTCTTGTGATTTTAACCGCGGCTAGCTCCCTGATG----TACCAGT
AG-TTAGTTTGATCGATTGGTTTG----TCTGACGGCTGCAGAAGATCGTGGTGAAGCTGGAACTGCACTGCGACGGGAA
GAAGCAGAAGGCGATCAAGACCGTCTCCACTCTCTGTGGTGACTTACTTACCCCCCT--TCTCTTTCTCGGAATCCGTCC
GGAATTGTATATTGCTAGCTTGT--------TCTGCTTCGTCGACAACATGCATGCACTGAGGCCACTCACTCATCAA-G
TACCATACCTCGGTTTGGCGCTTCTGACGACGACAACCGTGG----TTTCCT----TCCCCAGGTATCGACCAGATCGTC
ATGGACATGAAGGACGGCCAGATGACGGTCGTGGGGACGGTCGACCCCGTCGACGTCGTCCACAAGCTGCGCAAGCGCTT
CTGCTCGGTGCGGATGGTCTCCGTCGGCCCGGCCAAGGAGGAGGGGAAGAAGAACAATGAG-------------------
-----------------------GGCG------GCGGGGACAAGAAGGTCGACAACACGAAGGGCGCGTGCACGCCCATC
CCAGTGTGCCAGCCGTGCTACCCGGCGCACTGGTACCCGCCGCCTCACCACCCGCAGCCGTGCTACTGCTACGTCGTCCA
CACCGAGGAGCACCCCC------ACGCGTGCGTCATCTGCTGATCGACGCACATTTTTGTAGCCGGCCTGCATCTGCATA
CTAGCTGCCGATT-----GATCGATCCGGGCTCATCAGCCTACCTGCACCGGTGGTCGACGGCGTGCGTTCTATATATCT
ATGAC----------CGTGTGAGC---TACATATTTTACAGGTG-TCCGGCG-----GCTGCGCATCTGCTGAGCTTTGC
CAG--GTACCGAATTACAGTGTGGAGAAGAACTAAA----TAAATAAAACTGCTGCCTTTGGATTTTAAAGGCCGTTAGT
TATTAC--------------------------------------------------------------------------
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--------------------------
>chr2D_38
AAAT-------------------------------------GACCAGATGGTTTCTTTATATGAAAATAGGAGAGGACAG
CCTCGCTTTCATTATCATTAATTAAAGA---AAAAAGCAGCTGATCCGCAATG-------CATGGACTAGAGCAAGAGTT
----TCTGTGTGATGAAGCGACGTTCAATGCATGTGTCCGGCCGCAGCAAAGATAAGATCACCCGTCGCATCGCGAGCTA
CGCTACACGTCCCTAAC----------------------------------------------AATTGCAAATCTGCC-G
AGTTGTCCCCCG----GTTTCATTTTATTTTTCTCTTCCAGCG---------GGTGGGCTGTCACCGCAGACGCAAGAGC
AACTCCAACGAGCCAATCATTTCGTCCGCGCGTGTCTATTTGAATCGTCGCGGAAAAGTTGGCCCAACGTGCCGACTCAA
ATAGACGCGCGTCCGTTTTTTGTCCGCCTGCTGACCCATTCCCGGCCCAATTTTGAGTTTGATTTGCGTCGGCGCGGACA
CAAAGCGGACGTGCGCCTACTCCTCTCTTTGACCCGTTAGTCGGCGACACATTAGCCATTCTCTTCCACCCCTATCGAGA
GCAAGCCCTCGCCCACCCCGCATTGTCGCCGCCGCCGCCCAGTTCCGGTGTCTCTGCCAGTAGTCCGTGCCTTCACAGCA
CCCCCCTCCCCACACCGCCATCACCACCTCGCCGCCGGGCCACCGCAGCTTCCCACCCCCACACTTACATCGTCGCGAGC
ACGAAGTCACCCCCCGCGGCCCCGGCCAGCTCCTTCCTCGGACGCCGCCACGCTCGTCGAACGCCGCCAGGCCAGCCACC
TGGTCCAGGGAAGGCGCGCGTCTCTTCACCCGGCCAGCTTCTTTGTCGACGCACGCAAGTTGTTCGACAGTTTGCCTCAA
GGTACAAATGGACTCCGCCGACGAGTTATTTTTCCACAAATTTCTGTGCGACTCCGACGATTCCTCATCCGATGATGACG
AGGAGAGGGTGGCTGCTGTGTTGGTCCATAACCACCTTAATAGGCAGCGGCCGTTGTTCCGGGGCTCGATCCCGAGGCAG
ATTCCGGCGTTGAATCGCAACCGAGAGAGCGGTCATTTCCTTCTTTGGAAGGACTACTTTGACACAGCCAACCCGCTATT
CAAACATCACAAATTCCGGCGGCGTTTCTGTATGGCTAGGCATATTTTCAACCGTATTAGAGAGGGGGTGGTCGGATACG
ATAATTATTTCGAGTGCAAAGAGGATGCCCTTGAAAAGATTGGCTTCTCATCTTATCAGAAATGCATTGCAACTATCCGG
TGATCTCATTGATGAGTACGTCCATATGAGCGAGTCTACATGCCTAGAGTCCATGTACAGGTTCTGCAAGGCTGTGATTT
GCAGTGTTTGGCTCTGAGTACTTGAGAGAGTCGACTGCTGAAGATACAGGCCGCTTGTTACCGATCAATGCCAGCAGGGG
CTTCCCAGGATGCTTGGCAGCATAGACTGCATGCACTGGGGGTGGAAGAACTGTCCTTCTGCTTCGCAAGGGTAGTATAG
GGGCCATGTCAGGGTTTGCACTGTCATACTCGAGGCCGTGGCCTCACAAGATCTATGGATCTGACACTCTTTTTTTGGCA
TGACCGGATTGCACAATCAGCGTGCTTCAACGCTCGCTGGTGTTTGCAAGGCTTGCAACAGCCCACCGGTCAATATTAAC
ATCAACGGCCACAACTACAACAAAGGTTACTACCTAGGTGACGGTATCTATCCTCAATGGACCACTATTGCAAAGACAAT
CCCCAACCCTGTCGGAGAGAGAGAGGAAAAGATTTGCTCAAGAGCAAGAGAATGCTAGGAAGGATGTCGAGCGTGCCGTT
GGTGTTCTGCAATCGGCATCGTTCAATGTCCTGCTAGAACTTAGAGCACCAAAAAGTTGTGGGAGGTGATGACCTCTTGT
GTGGTCATGTACAATATGATCGTAGAGGATGAGCGCCCGGAACGTATTTACGATCAAGGGTGTAGTTTCAGGGTGACAAT
GTTGTGCCTGAGCATGGAGGAGGAGCGGCAATGTTTACACAGTTCACCCAATTTCATCATCAAATGCGTGATTGGAAAAC
ACACATTCAACTGCAAGATGATTTGGTTGAGTATATGTGGGCTCATGTTGGCAACCAATAGATATATCTTTTTTTGAAAT
GTATTTGAGGCAATTTAATTTTTATTCGGCTTGTAAACTATGCTATATTTATCCGGCTTATAAACTATGCTATATTTATT
TGGTTGTGAAACTATAATATTTTTGTTTGATTATGAAACTATGCAAAATGTCTGTATATTTGTTAAAAAAGGCGTCAAGC
CCGCCGCGCGGGTAAATATGGATCGGCACGTTGGGCGCACTGCCGATCCAAATGACGGACGCCGAGTGTACGACCGATCC
GGACGGATAAAAAGCGGACATAATCGCCATGTTTGGGTAGGTTCGTTGGAGTTGCTCTAATGCGGAGGGTGAT-ATCATA
GCCGGTTAAACCAAGATTAATTGCA--------GCGGTTGGATGGTGTTCACCGATCTCCGTGCGTGGCATCCGCGACGG
GCATAGCC---AGGCCCCACCTCGTGTACGCTGATCGACACGAGTGCTCGCAGAGGAAAAGCGTTCTGACCGCCGGTGCC
GGGGACGAAGCAAAATTCACGCGGCGAGATCGGCCGAACTTGCTTGGAACCACCGCTAGA-CGTCCGAACTCTCTTTTCT
CCTGGCA---ATGGTAGGTGATGATGGTTGGTTGGTCCGCTGGGCTGAGGTGCCGCGCCAATTAACCATTTGCCGCTGCC
GCTAGATGCACTTGTGCCATAACTTAACGGCCGTTGCAATCGCATCACCAATTGTTGCAATGCAACTACGGACAAGGGAC
GACGTACGCGTCGTAACTAAGGCA------------AGCGAGCGACAGCGCTGACAGCTTTGCCCAACGCCAGATCGGTC
GGCTTAATTAGCTCACGATGCCCAA--GTGTGTCAAGATACTCGCCAAGTAGCAATCATGGATCGATGGAGCAACCCCGG
CCGGACCCGCACCGAGACTCCAGCACAGGACGTCGTCGGTCGTCGTGGCCATTCATTCCCTGGCGCCACCGTACGTACGT
GCGTACAACGCCCCTCGGTCTCCTCCACTCTCCAATGGCGCTCACACCTGGCCACACGCACGCCCGCGGATTAACGTACG
CCCTAGTCCCACTGT-GCCAACTCCCAACAATACACGGAGTCATGGTAGTACGTGCCACGGCCTCTGCCTATAAATCCCC
CAGGCTCCATCACTCGCT-------------------GCTACATCGTCGCCG---------GGAGGGAAGCCGCCGCTCG
CCGTTCCAATTCATTCCATCCCACCCTTCCAAATTCATTCGTCCATCCGAGGATCGATGGCCGCCGTGAAGGTCATTGCT
TT--ACGGCCGATCGAACTGGCATTCCTTGATTTCTCTTGTGATTTATACCGCGCCTAGCT-CCTGATGTACCTACTGGT
AG-TTAGTTTGATCTGATCGTTTGGTGCTCTGACGGCTGCAGAAGGTGGTGGTGAAGCTGGACCTGCACGACGACACGGG
GAAGCGCAAGGCGATCAAGGCCGTCTCCGCTCTCTGTGGTGACTTAC----TTTACTCCCCTTCTTCTCCGAATCCGTCC
GGCATTGTATCTTGCTTGCTTGTGTTCTTGGTCTGCCTCGTCGTAAACATGCATTCATGGAGGTCGCTCACCCATCA---
----ATATCTCAGTTTGGCGCTTCTGACGACGGCGACCGTGG----CTTCCTTCTGTCCCCAGGTATCGACGAGATCGCC
GTGGACATGAAGGAGGACAAGATGACGGTCGTGGGCACGGTCGACCCCGTCCACGTCGTCGGCAAGCTGCGCAGGCGCTT
CTGCGCGGTGCAGGTGGTCTCCGTCGGTCCGGCCAAGGATGAGGAGAAGAA-----------------------------
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>chrUn_38
-------------------------------------AAAAGACCAGATGGTTTCTTTACATGAAAATCGGAGAGGGCAG
CCTCTCTTC------CAATAATTAAAGAAACAAAAAACAGCTGATCCGCAATGAGTAGTCCATGGACTAGAGCATATGTT
----TCTGTGTGATGAAGCGAGGTTCAATGCATGTGTCCGGCCACAGCAAAGATACCATCGCCCGTCGCATCATGAGCTA
CGCATCTA----TAACACC-TTGTTTAAGAACTGCAAGCAACTCTTATTCAT---------------------CTGCA-G
GGCTGTCCCTCTATACGTTTTATATTTTTTTTTTCTTCCAACGGAAACCAGCGGTGGGCTGTGACCGCATG---CAGACG
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---------------------------------------------------------GAATGCGAAGGGTGAGGATTATA
GCTGGTTGAACCAAAATTAT----A--------GCGGTTGGATGGTGTTTATGT-------------------GCGACGG
ACATGGCTAGGAGGCTCCACCTTGTGTGCGTTGATCGACACGAGTGCTCGCAATTTTTTCGTTTTCCGACCGCCGGTGCC
CGGGACGAAGCAAACTTCACGCG---------GCCGAACTTGCTTCGAGCTACCGCTAAGCCGTCCAACCTCTCGTTTCT
CCCGGCATG----GTAGGTGATTGGTCCGCAT-------------------------------CACCATTTGAGGCCGCG
CGCCGTCGCTAGCTGCTGCAATACATTGAATCAGGC--------------------------------CGGACAAGGGAC
GTA---CTGGTCGTAACTACTGCTTTGCAAATAACGAGCGATCGACAGCACTGACAGCCTAGCCCAACGCCAGATCGGTC
GGCCTACTTAGCTCACAACCCAAGTATGTCTGTCAAGATACTACTCGCCGAGTCG--------CGATCGAGCCACCCCGG
CAGGACCCGCACCAAGACTCCGGCAG--------GTCGGTCGTCGTGGC----CATTCCCCGGCGCCACCGTACGTACGC
CCCTAGAT--------------CTTCACTCTCCAATAGCGCTTACACACGCCCTAGTCCTAGT-----------------
-----GTCCCACATT-CCCAACTCCCAACAACACACGG---A---GTAGTACGTGCCACGGCCTCTGCCTATAAACCCGC
CAGGCTCCGTCGCTAGCTACTCGCG-CCC---ATACAGCTCCATCGTCGCCG---------GGAGAGAA-----------
-CGTTCTATTTCATTCCGTCCCACCCTTTCAAATTCATCG----ATCCGGGGACCGATGGCCGCCATGAAGGTCATTGCT
TACCACAGCCGATTGAGCAGGCATTTCTTGATTTCTCTTGTAGTT-----------------------------------
-AATTAGTTTGATCGGTTAGTTGTATATGATGACGGCTGCAGAAGATCGTGGTGAAGCTGGAACTGCACTGCGACAGGGA
GAAGCAGAAGGCGATCAAGACCGTCTCCACTCTCTGTGGTGACTTACTTACTCCCCT--TCTCTTTCTCCGAATCCGTCC
GGAATTGTATCTTGCTAGCTTG--------GTCTGCTTCGTCGACAACATGCATGCACTGAGGCCACTCACTCATCCACG
TACCATATCTCAGTTTGGCGCTTCTGACGACGACAACCGTGTG--CCTTCCT----TCCCCAGGTATTGACCAGATCGTC
GTGGACACGAAGGACGGCAAGATGACGGTCCTGGGCACAGTCGACCCCGTCGACGTCGTCTGCAAGCTGCGCAAGTGCTT
CTGCTCGGTGTGGATGGTCTCCGTCGGCCCGGCCAAGGAGGAGGAGAAGAA-----------------------------
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>chrUn_1091
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----------------ACTGGCATTCCTTGATTTCTCTTGTAATTTATACCACGCCTAGCT-CCTGATT----TACTGGT
AG-TTAGTTTGATCTGATCGGTTGGTGCCCTGACGGCTGCAGAAGGTGGTGGTGAAGCTGGACCTGCACGACGACACGGG
GAAGCGCAAGGCGATCAAGGCCGTCTCCGCTCTATGTGGTGACTTAC----TCCCCT--TCTTTCTCTCCGAATCTGTCC
GGCATTGTATCTTGCTTGCTAGTGTTCTTGGCCTGCCTCGTCGTAAGCATGCATTCATGGAGGTCGCTCACCCATCA---
----ATATCTCAGTTTGGCGCTTCTGACGACGGCGACCGTGGCTTCCTTCCT----TCCCCAGGTATCGACGAGATCGTC
GTGGACACGAAGCACGAAAAGATGACGGTCGTGGGCACGGTCGACCCCGTCCACGTCGTCGGCAAGCTGCGCAGGCGCTT
CTGCACGGGGCAGGTGGTCTCCGTCGGCCCCGCCAAGGAGGAGGAGAAGAAGGAGGTCTCAGTCGGCCCGGCGAAGGAGG
AAGAGAAGAAGAAGAAGAAGGACGACTGCGGGTGCGGGGACAAGAAGGA---------------CGGGAGCACGCTCGTC
CCAGTGTGCCTGCCGTGC---------------TACCCGCCGCCGCACCACCCGCACCCGTGCTACT------TCGTGAA
CACCGAGGAGGGCCCCA------ACGCGTGCGCCATCTGCTGATCTTTTCTG--------AGCCGGTCTGCATCTGCATG
CCATGCCAGCCGATTGACGATCGATGGGGACTTATCAGCCTTCCTGCACCGGTGACCGACGGCGTGCGTTATATATATAT
ATATATATGGCCGTACGTGTGAGC---TAAAAATTGTACCGGTG-ATCGGGCGGCTTGCTGCGCATCTGCTGAGCTT-GC
CAG--ATACGGAATTACAGTGTGGAGAAGAACTACTATAGTAAATAAAACTGCTGCAT----------------------
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>chrUn_1091
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----------------ACTGGCATTCCTTGATTTCTCTTGTAATTTATACCACGCCTAGCT-CCTGATT----TACTGGT
AG-TTAGTTTGATCTGATCGGTTGGTGCCCTGACGGCTGCAGAAGGTGGTGGTGAAGCTGGACCTGCACGACGACACGGG
GAAGCGCAAGGCGATCAAGGCCGTCTCCGCTCTATGTGGTGACTTAC----TCCCCT--TCTTTCTCTCCGAATCTGTCC
GGCATTGTATCTTGCTTGCTAGTGTTCTTGGCCTGCCTCGTCGTAAGCATGCATTCATGGAGGTCGCTCACCCATCA---
----ATATCTCAGTTTGGCGCTTCTGACGACGGCGACCGTGGCTTCCTTCCT----TCCCCAGGTATCGACGAGATCGTC
GTGGACACGAAGCACGAAAAGATGACGGTCGTGGGCACGGTCGACCCCGTCCACGTCGTCGGCAAGCTGCGCAGGCGCTT
CTGCACGGGGCAGGTGGTCTCCGTCGGCCCCGCCAAGGAGGAGGAGAAGAAGGAGGTCTCAGTCGGCCCGGCGAAGGAGG
AAGAGAAGAAGAAGAAGAAGGACGACTGCGGGTGCGGGGACAAGAAGGA---------------CGGGAGCACGCTCGTC
CCAGTGTGCCTGCCGTGC---------------TACCCGCCGCCGCACCACCCGCACCCGTGCTACT------TCGTGAA
CACCGAGGAGGGCCCCA------ACGCGTGCGCCATCTGCTGATCTTTTCTG--------AGCCGGTCTGCATCTGCATG
CCATGCCAGCCGATTGACGATCGATGGGGACTTATCAGCCTTCCTGCACCGGTGACCGACGGCGTGCGTTATATATATAT
AT------------------------------------------------------------------------------
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>chr7A_2391
TATAC---------------------------------------------------------------------------
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----------------ACTAGTAGAAAAGGGGGCATTGGTCCAGGCCGGGTAAGCCCATTAGTCCCGGTTCAGTCCAAAA
CCGGGACCAATGGGTGCATTTATCCCGGTTCGTGCGGGTAAGGCATTAGTCCCGGTTCACTTGGGCCCTTTAGTCCCGGT
TCGTGCCACGAACCGGGACTAAAGGGTGCGATGCCCATTAGTCCCGGTTGGTGG-ACCAACCGGTACTAAAGTTTAGACC
TTTAGTCTCGGTTGGTGCCACCAACCGGGACTAATGGGCTTTGAGGCATTAGTACCGGTTCATGGCACGAACCGGTACTA
AAGGTCCCATTTTCAAACTCTCCCCCCC----TC-CCAGTGGACCGCCTTTTCAGTTTTAGAAAAAACAAAAGAAAATGA
TGGAAATGTCAA-AAAAATAAAATAAAATAAGTTTCCCATGTGATATGTGGTCTAGTTGTTGGGAAAATTTACAAATATG
AATTTCGACTTTATTTACAAAATCTCTCCGGAATTTGTAAAATGGGCATAACTTTTGCATACGAACTCGGATTAAAAAGT
TTTTTATATGAAAAATCATCTACTCG
>chr5A_2395
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--------------ACACTAGTAGAAAAGGGGGCTTTGGTCCAGGCCGGGTAAGCCCATTAGTCCCGGTTTAGTCCAGAA
CCGGGACCAATGGGTGCATTTATCCCGGTTCGTGCGGCTAAGGCATTAGTCCCGGTTCACCTGGGCCCTTTAGTCCCGGT
TCGTGCCACGAACCGGGACTAAAGGGTGCGATTCCCATTGGTCCCGGTTGGTGGCACCAACCGGTACTAAAGGTTAGACC
TTTAGTCCCGGTTGGTGCCACCAACCGGGACTAATGGGCTTTGAGGCATTAGTACCGGTTCATGGCACGAACCGGTACTA
AAGGTCCCATTTTCAAACTC-CCCACCC----CCCC--GTGGACCGCCTTTTTAGTTTTAGAAAAAACAAAAGAAAATGA
TGGAAATGTCAATAAAAATAAAATAAAATAAGTTTCCCATGTGATATGTGGTCTAGTTGTTGGGAAAATTTACAAATATG
AATTTCGACTTTATTTACAAAATCTCTTTGGAATTTGTAAAATGGGCATAACTTTTGCATACGAACTCGGATTAAAAAGT
TTTTTATATGAAAAATCATCTACTCG
>chr3A_2395
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------ACACTAGTAGAAAAGGGGGCTTTGGTCCAGGCCGGGTAAGCCCATTAGTCCCGGTTCAGTCCAGAA
CCAGGACCAATGGGTGCATTTATCCCGGTTCGTGCGGCTAAGGCATTAGTCCCGGTTCACCTGGGCCCTTTAGTCCCAGT
TCGTGCCACGAACCGGGACTAAAGGGTGCGATGCCCATTGGTCCCGGTTGGTGGCACCAACCGATACTAAAGGTTAGACC
TTTAGTCCCGGTTGGTGCCACCAACCGGGACTAATGGGCTTTGAGGCATTAGTACCGGTTCATGGCACGAACCGGTACTA
AAGGTCCCATTTTCAAACCT-CCCCCCC----CCCT--GTGGACCGCCTTTTCAGTTTTAGAAAAAACAAAAGAAAATGA
TGGAAATGTCAATAAAAATAAAATAAAATAAGTTTCACATGTGATATGTGGTCTAGTTGTTGGGAAAATTTACAAATATG
AATTTCGACTTTATTTACAAAATCTCTCTGGAATTTGTAAAATGGGCATAACTTTTGCATACGAACTCGGATTAAAAAGT
TTTTTATATGAAAAATCATCTACTCG
>chr2A_2396
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------CACTAGTAGAAAAGGGGGCTTTGGTCCAGGCCGGGTAAGCCCATTAGTCCCGGTTCAGTCCAGAA
CCGGGACCAATGGGTGCATTTATCCCGGTTCATGCGGCTAAGGCATTAGTCCCAGTTCACCTGGGCCCTTTAGTCCCGGT
TCGTGCCACGAAACGGGACTAAAGGGTGCGATGCCCATTGGTCCCGGTTGGTGGCACCAACCGGTACTAAAGGTTAGACC
TTTAGTCCCGGTTGGTGCCACCAACCGGGACTAATGGGCTTTGAGGCATTAGTACCGGTTCATGGCACGAACCGGTACTA
AAGGTCCCATTTTCAAACTC-CCCGCCC----CCG---GTGGACCGCCTTTTCAGTTTTAGAAAAAACAAAAGAAAATGA
TGGAAATGTCAAGAAAAATAAAATAAAATAAGTTTTCCATGTGATATGTGGTCTAGTTGTTGGGAAAATTTACAAATATG
AATTTCGACTTTATTTACAAAATCTCTCCGGAATTTGTAAAATGGGCATAACTTTTGCATACGAACTCGGATTAAAAAGT
TTTTTATATGAAAAATCATCTACTCG
>chr5A_2396
--------------------------------------------------------------------------------
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---------------CACTAGTAGAAAAGGGGGCTTTGGTCCAGGCCGGGTAAGTCCATTAGTCCCGGTTCAGTCCAGAA
CCGGGACCAATGGGTGCATTTATCCCGGTTCGTGCGGCTAAGGCATTAGTCCCGGTTCACCTGGGCCCTTTAGTCCCGGT
TCGTGCCATGAATCGGGACTAAAGGGTGCGATGCCCATTGGTCCCGGTTGGTGGCACCAACCGGTACTAAAGGTTAGACC
TTTAGTCCCGGTTGGTGCCACCAACCGGGACTAATGGGCTTTGAGGCATTAGTACCGGTTCATGGCACGAACCGGTACTA
AAGGTCCCATTTTCAAACTC-CCCCCCC----CCT---GTGGACCGCCTTTTCAGTTTTAGAAAAAACAAAAGAAAATGA
TGGAAATGTCAATAAAAATAAAATAAAATAAGTTTTCCATGTGATATGTGGTCTAGTTGTTGGGAAAATTTACAAATATG
AATTTCGACTTTATTTACAAAATCTCTCTGGAATTTGTAAAATGGGCATAACTTTTGCATACGAACTCGGATTAAAAAGT
TTTTTATATGAAAAATCATCTACTCG
>chr3A_2396
--------------------------------------------------------------------------------
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---------------CACTAGTAGAAAAGGGGGCTTTGGTCCAGGCCGGGTAAGCCCATTAGTCCCGGTTCAGTCCAGAA
CCGGGACCAATGGGTGCATTTATCCCGGTTCGTGCGGCTAAGGCATTAGTCCCGGTTCACCTAGGCCCTTTAGTCCCGGT
TCGTGCCACGAACCGGGACTAAAGGGTGCGATGCCCATTGGTCCCGGTTGGTGGCACCAACCGGTACTAAAGGTTAGACC
TTTAGTCCCGGTTGGTGCCACCAATCGGGCCTAATGGGCTTTGAGGCATTAGTACCGGTTCATGGCACGAACCGGTACTA
AAGGTCCCATTTTCAAACTC-CCCCCCC----CC-C--TTGGACCGCCTTTTTAGTTTTAGAAAAAACAAAAGAAAATGA
TGGAAATGTCAATAAAAATAAAATAAAATAAGTTTCCCATGTGATATGTGGTCTAGTTGTTGGGAAAATTTACAAATATG
AATTTCGACTTTATTTACAAAATCTCTCTGGAATTTGTAAAATGGGCATAACTTTTGCATACGAACTCGGATTAAAAAGT
TTTTTATATGAAAAATCATCTACTCG
>chr7A_2396
--------------------------------------------------------------------------------
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---------------CACTAGTAGAAAAGGGGGCTTTGGTCCAGGCCGGGTAAGCCCATTAGTCCCGGTTCAGTCCAGAA
CCGGGACCAATGGGTGCATTTATCCCGGTTCGTGCGGCTAAGGCATTAGTCCCGGTTCACCTGGGCCCTTTAGTCTCGGT
TCGTGCCACGAACCGCGACTAAAAGGTGCGATGCCCATTGGTCCCGGTTGGTGGCACCAACCGGTACTAAAGGTTAGACC
TTTAGTCCCGGTTGGTGCCACCAACCGGGACTAATGGGCTTTGAGGCATTAGTACCGGTTCATGGCACGAACCGGTACTA
AAGGTCCCATTTTCAAACTC-CCCCCCACCCCCC-C--GTGGACCGCCTTTTTAGTTTTAGAAAAAACAAAAGAAAATGA
TGGAAATGTCAATAAAAATAAAATAAAATAAGTTTCACATGTGATATGTGGTCTAGTTGTTGGGAAAATTTACAAATATG
AATTTTGACTTTATTTACAAAATCTCTCTGGAATTTGTAAAATGGGCATAACTTTTGCATACGAACTCGGATTAAAAAGT
TTTTTATATGAAAAATCATCTACTCG
>chr7A_2396
--------------------------------------------------------------------------------
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---------------CACTAGTAGAAAAGGGGGCTTTGGTCCAGGCCGGGTAAGCCCATTAGTCCCGGTTTAGTCCAGAA
CCCGGACCAATGGGTGCATTTATCCCGGCTCGTGCGGCTAAGGCATTAGTCCCGATTCACCTGGGCCCTTTAGTCCCGGT
TCGTGCCACGAACCGGGACTAAAGGGTGCGATGCCCATTGGTCCCGGTTGGTGGCACCAACCGGTACTAAAGGTTAGACC
TTTAGTCCCGGTTGGTGCCACCAACCGAGACTAATGGGCTTTGAGGCATTAGTACCGGTTCATGGCACGAACCGGTACTA
AAGGTCCCATTTTCAAACTC-CCCCCCCTCCCCC-C--GTGGACCGCCTTTTCAGTTTTAGAAAAAACAAAAGAAAATGA
TGGAAATGTCAATAAAAATAAAATAAAATAAGTTTCACATGTGATATGTGGTCTAGTTGTTGGGAAAATTTACAAATATG
AATTTCGACTTTATTTACAAAATCTCTCTGGAATTTGTAAAATGGGCATAACTTTTGCATACGAACTCGGATTAAAAAGT
TTTTTATATGAAAAATCATCTACTCG
>chr4A_2396
--------------------------------------------------------------------------------
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---------------CACTAGTAGAAAAGGGGGCTTTGGTCCAGGCCGGGTAAGCCCATTAGTCCCGGTTCAGTCCAGGA
CCGGGACCAATGGGTGCATTTATCCCGGTTCGTGCGGCTAAGGCATTAGTCCCGGTTCACATGGGCCCTTTAGTCCCGGT
TCGTGCCACGAACCGGGACTAAAGGGTGCGATGCCCATTAGTCCCAGTTGGTGGCACCAACCGGTACTAAAGGTTAGACC
TTTAGTCCCGGTTGGTGCCACCAACCAGGACTAATGGGCTTTGAGGCATTAGTACCGGTTCATGGCACGAACCGGTACTA
AAGGTCCCATTTTCAAACTC-CCCCCCC----CCTG--GTGGACCGCCTTTTCAGTTTTAGAAAAAACAAAAGAAAATGA
TGGAAATGTCCATAAAAATAAAATAAAATAAGTTTCACATGTGATATGTGGTCTAGTTGTTGGGAAAATTTACAAATATG
AATTTCGACTTTATTTATAAAATCTCTCTGGAATTTGTAAAATGGGCATAACTTTTGCATACGAACTCGGATTAAAAAGT
TTTTTATATGAAAAATCATCTACTCG
>SNPs
-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------
----------------------------------------------SS--------------------------------
S-SS----------------------------------------------------------------------------
-------------------S-----------S------------------------S----------S----------S-
---------------------------------S--------------S-------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------S---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------S--------------------S---------------------
--------------------------------------------------------------S-----------------
---------------S----------------------------------------------------------------
---S-----------------SS-------------------------------------------------S-------
----------------------------------------------------------------------------S---
----------S---------S------------------------------------S----------------------
--------------------------------------------------------------------------------
---------------S--S---------S--------------------------------S------------------
-------------------------S---------------S----SSSSSSSSSSSSSSS-------------------
--------------------------------S---SSS-----------------------------------------
------------------------------------------------SSSSS--SS----------S----S--S----
S-------------------------------------------------------------------S---------S-
---------------------S-----------S----------------S-S-S-----SS-------S-------S--
------S--------------------------------S----------------------------------------
-------------------------------------------------S------------------------------
--------------------------------------------------------------------------------
---------------S---------------------------S-S-----S-S----S-S-SS---SSS------SS--
-S-SS--S---S------S-S-----S------------------S-----S----------------------------
-------------------------------------------SSSSSS-------------S---S-------------
-----------------SSSSSS----------------------------------SSSSS-S-S--------------
---------------------S--------------------S-------------------------------S-----
---S--------------------SSS-----------------S------S----------------------------
---SS--------S------------------------------S-----------------S---------S-S--S--
------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS----------------S------------------------------S------------S-----
-------------S------------------------------------------------------------------
--S-----------------------------------------------------S-----------------------
----S---------------S---------------------S-------------------------------------
-------------------------------------S------------------------------------------
--------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
----------S---------------
>forward_163
--------------------------------------------------------------------------------
--------------------------------------------------------------TGGACTAGAGCATGTGTT
CCG-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------
>reverse_4663
--------------------------------------------------------------------------------
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----------------------CCAAGTGCTACGGCCATACA--------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------
