>input_sequence_64471
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---------------------------------------------------------------------ATGGCAACGGC
ATCGAGGCTCCTGCGGGCCGCCCGGCACGCATCGCTCGCATCTCGCGCCGCTGCGTCAGCGGCATCGAGGCTGCTGCGGG
CCGCCCGGAACGCATCGCTCGCATCTCGCCCCGCTGCGTCAGCCGCATCTCGCGCCGCTGCGATGGCCGCGTGCGGCACC
GTCGCGGCAGCCGCATCTCGCGCCGCTGCGATGGCCTCTCGCTCAGAGCGTGCGGCCGCAGCCGTCGCCCATTTAGCCTC
GGACGTCCTCCAGAGCCGCCCAATTCGCGGCGATGCCTCAAGCACGAAGCCCCATGGCCGTGACGCTCCTCGTTTTTGCC
TCGCCGAGTACCTATCCAGCGCCAATTACAAGCGCTTGCCAGGTAAACTTACCAATCCCACCCTCTTTCTTCCTGGTGCA
AGGGTCCCTTTTTTTCATAGTTAGGGCTGGGAATCCATCCATCTCTCCTTTTTCTTGAGCCGCATCTCATAAATTCTTTG
ACAAACCAAATTGCATGCAATTCGCGGCTGTATGTGCTTGAGAGACATTACTTACGCTTGCTTATAAAACTGTGTGTC-A
TAGATGATGTTAAG------ACCCCGACGGACAAGGACCTTGAGTCGGACGAAGCCCTATGGGCCTTGTATGAGCGCTGG
TGCAAGGCTCATAACAAGGAACGTGACCATGCGGACATGGCTCGCCGGTTCAAAATATTCAAGATCAATGCAGATGATGT
GCACCATTGGAACACTTATCTTCCTCCAGATCCAGTGGAAGCAGCCATTCACCGTGAGAAAAGAGAAGAGGCAAAGTTAC
TTCGTTCAAAAGGCCAAGACGTCTCATACTTTGATGTGTGGCATCTGCCATCGGAATTAGGTCCATTCGCCGATGGCGGA
GACCCATTTATTACCGAAAGCAATAT--GCGCTTGTTGAAGGAAATCGAA--------------------------GATG
CTGAAGGTGTTAAAGCAGAGTA---G------------------------------------------------------
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>chr5B_1_TraesCS5B01G167900
CCTCCATGTCGCTCATGGCCGCGACCAAGCTTGAAGACGGATCTGACATCTCTTAATAATCTCGCCCGAAGAAGAAATCT
GTTCCCCGAGCGGTAGATCCCTAGCGTCTCCCCTGGATCGCCGACCCGGAGCCAAGCCCCGGCGGCGAGCGATCGACAAA
GGAGGACAGGGGAGCGAAAATCTCCAAAGCAATCGCCGTCGCCTGGAGGAGAGGAAACCCTAGCGAGAGGGGACAACTAC
CCTTGTGCGGCGATTTCGCGTTTTTTTAGAATCCAAGCTATTAAGGGCCTGTTCGGTAGTTGGCCAGCTTCCCGATTCAT
CAATTTTTCGCTGGAGCTGGGCCGAACGGTTTGGCTTCGAGAAGCTAGCTTCCCGGATCTGAAGGAGA-TCTACGTACAA
AAAACAGGAGCGGCACTTCTGGCGATCCAAGGAAAAGGGAAGCGGGAGTTAGG-CTAAATTACAGAGGAGTGCCACTGCG
AAGTGACTCGAGAGGCACATACCGGTTCGCTACGTTCTCTCTCCCCTCTTATTACGTCCCGATGAGGCGACGTGGAGAGA
TCGCTACCTTTCCCTATGTACTGGGCCAAGCCCAACGACTCTCCTCCTGTGTCTGACCGGGCCTAAGGCCACTTTACGTG
TTGAGCTGGCTGGGCTCCAGCTCGCCCATGCAGGTTGGCCTGCCGCTA--------------------------CGAACA
GTTTT-CATCGATCACGATCTCGTGGAAGAAGCCAACATCGATAAATAGAAGCGGGATTTGCGGATCTAGTGAAGCTAGG
GGACTACCGAACAGGCCCTAAGGCCAATTCTAGCCCAGCCCATTAGCAGGCTAGTTCTAGAACACTCGGCCGGCTTGGGG
CTAGGGTTTACTGATCCTAAAATCTACTCCCTCCGTTCCAAAATAGATGACCCAACTTTATATTAAAGATAGTACAAAGT
TGAGTCATCTATTTTGGAACGGAGGGAGTACTGTACAAGAACACCGAAGGAGGAGGAGGCGTATTCCCCATGGCAACGGC
ATCGAGGCTCCTGCGGGCCGCCCGGCACGCATCGCTCGCATCTCGCGCCGCTGCGTCAGCGGCATCGAGGCTGCTGCGGG
CCGCCCGGAACGCATCGCTCGCATCTCGCCCCGCTGCGTCAGCCGCATCTCGCGCCGCTGCGATGGCCGCGTGCGGCACC
GTCGCGGCAGCCGCATCTCGCGCCGCTGCGATGGCCTCTCGCTCAGAGCGTGCGGCCGCAGCCGTCGCCCATTTAGCCTC
GGACGTCCTCCAGAGCCGCCCAATTCGCGGCGATGCCTCAAGCACGAAGCCCCATGGCCGTGACGCTCCTCGTTTTTGCC
TCGCCGAGTACCTATCCAGCGCCAATTACAAGCGCTTGCCAGGTAAACTTACCAATCCCACCCTCTTTCTTCCTGGTGCA
AGGGTCCCTTTTTTTCATAGTTAGGGCTGGGAATCCATCCATCTCTCCTTTTTCTTGAGCCGCATCTCATAAATTCTTTG
ACAAACCAAATTGCATGCAATTCGCGGCTGTATGTGCTTGAGAGACATTACTTACGCTTGCTTATAAAACTGTGTGTC-A
TAGATGATGTTAAG------ACCCCGACGGACAAGGACCTTGAGTCGGACGAAGCCCTATGGGCCTTGTATGAGCGCTGG
TGCAAGGCTCATAACAAGGAACGTGACCATGCGGACATGGCTCGCCGGTTCAAAATATTCAAGATCAATGCAGATGATGT
GCACCATTGGAACACTTATCTTCCTCCAGATCCAGTGGAAGCAGCCATTCACCGTGAGAAAAGAGAAGAGGCAAAGTTAC
TTCGTTCAAAAGGCCAAGACGTCTCATACTTTGATGTGTGGCATCTGCCATCGGAATTAGGTCCATTCGCCGATGGCGGA
GACCCATTTATTACCGAAAGCAATAT--GCGCTTGTTGAAGGAAATCGAA--------------------------GATG
CTGAAGGTGTTAAAGCAGAGTA---G----TAGTTTGCTTAGGGAAATCCCAGACCCTGAATGAGATGAACTCATCTCAC
CAAATCACTCCACTGTAATAAGTTATGCTTTGCTGTTCCATGTGTACTAAGTTATGC----TTCCATGTGTGCTAAGTTA
TGCTTCAGTGTACTAGCTAAATTATGCCTCTGGAACATCTTTTTCTCTAAGCGGTCATGGTTTGCTTCCTCCTGTGCAAA
GTGTCTATTTTTAGTCGTTTGCGTTGTTTACAGGCACAAGCACAAGAGTTCAAACAGATCAAGATCAAGGACGGAGATGG
TAATATATGGCAGCTGTTTGGACATTATTTAATTTGTTGAGCATTAGGATGAAAAGAGGTCATTTTTTTATAACTATCAT
TCATGCATTGTTTGTTAATGTATAATTAAGCTAGCGATTATGCCCAGTGTTAGCAAGCACCTGTATAAATAATCAATCAT
ACATGTGTGTGTGTGTGTGTAAAGAGGACAAAACTAAACTTCGTTATTTGGATTTGTTGGCTCGCTGAACAAAACTGCTG
TTTATTACCCCTGTGAAAAACTATGTAGATTGACCATATGAGTTTTCACAACTTGTTTGTTAGGTGCTTGTTTGCCAATT
CAGTGAGAAACCTCTAGCTGCGTAGCCGTGATTTACTTGTCCTTTTTGGAGTAGTGTAGCCTCAAGGCAGGGGCGGATCC
ATGTGAGGGCATGGGTGTACAGATGTACACCCAATTATTTTGGCAAGATTTTTTCTATATATGATGTATACTACGTACAT
GTATTGAATGTGGTGTAGTTTGTGCAATAAACACATGTTAATTCGCATAAAACTGGCCTCAAAGCCTCAGTCCAACAACC
ATAAGTTTTGACAGTCTATCCCAGACGACCCAAGTGGCTGCAAGTAAAGGATCCCTACTTGAAATATGGTTTTTGTTACA
TTTTCTGCTTAAGAATTTTTCTGCAAGTAAGGATAATGACACCATGCCTTGTTTTTGGCCATGACATATTGCAT
>chr1A_278
CTCTTT--------------------------------------------------------------------------
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-------------------------------------------AGGGCCTGTTCGGTAGTTGGCCAGCTTCCCGATTCAT
CAAATTTTCGCTGGAGCTGGGCCGAACGGTTTGGCTTCGAGAAGCTAGCTTCCCGGATCTGAAGGAGA-TCTACGTACAA
AAAACGGAAGCGGCACTTCTGGCGATCCAAGGAAAAGGGAAGCGGGAGTTAGG-CTAAATTACAGAGTTGTGCCACCGCG
AAGTGACTCGAGAGGCACATACCGGTTCGCTTCGTTCTCTCTCCCCTCTTATTACGTCCCGATGAGGCGACATGGAGAGA
TCGCTACCTTTCCCTCTGTACTGGGCCAAGCCCAACGACTCTCCTCCTATGTCCGACCGGGCCTAAGGCCACTTTACGTG
TTGAGCTGGCTGGGCTCCAGCCCGCCCATGCAGGTTGGCCTGCCGGTACGAACCAGAAGTTGGAGTTAGCGAGGCGAACA
GTTTT-CATCGATCGTGATCTCATGGAAGAAGCCAGCATCGAGAAATAGAAGTGGGATTTGCGGATCTAGTGAAGCTAGG
GGACTACCGAACAAGCCCT-------------------------------------------------------------
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>chr5D_284
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-------------------------------------------AGGGCCTGTTCGGTAGTTGCCCAGCTTCCAGCTTCAT
CAAATTTTCGCTGGAGCTGGGCCGAACGGGCTGGCTTCGAGAAGCTAGCTTCCCGGATCTGACGAAGA-TCTACGTACAA
AAAACGAGAGCAGCACTT-----------------AGGGAAGCGGGAGTTAGG-CGAAATTACGGAGGAGTGCCACCGCG
AAGTGACTCGAGAGGCACGTACCGGTTCGCTATGTTCTCTCTCCCCTCTTATTACGTCCTCTCGAGGCGACGTGGACAGA
TCGCTACCTTTCCCTCTGTACTGGGCCAAGCCCAGCCACTCTCCTA-TGTGCCCGATTGGGCCTAAGGCCACTTTACGTG
TTGAGCCGGCTGGGCTCCGGTCCGCTCATGCAGGTTGGCCTGCCGGCAAGCACCAGAAGCTGGAGTTAGCGAGCCGAACA
GTTTA-CATCGATCGCGATCCCGTGAAAGAAGCCAACATCGA-AAATAGAAGCTAGATTTACGGATCCAGTGAAGCCAGA
GGACTACCGAACAGGCCCT-------------------------------------------------------------
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>chr4A_284
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-------------------------------------------AGGGCCTGTTCGGTAGTTGCCCAGCTTCCAGATCCGC
GTAATCTGGGCTGGAGTTGTGCCGAACGGTTCCGCTCAGGGAAGCTAGCTTCCTGGATC-GAAGGAGAGTCTATGTACAA
AAAACTGGAGCCGGGTTACTGGCGATCCA-GGAAAAGAGAAACTGGGAGTTGTCCTAAATTACGGACTAATGCCACCGCC
AAGTGACTCGATGGCTGCGTACCGTTTTGCTAC-TTCTCTCTCCCCTGTCCTGACACCTTGTATTCGCTACGTGGAGAGA
TCGCTACCATTCGCTCCGAACTAGGCCAAGCCCAGCCACTCTCCTTCTGTGTCCGACTGGGCCTAAGGCCACCTTAGCTG
TTAAGCCGGCTGGGCTCCAACCCGTCCAGGCAGTTTGGCCTGCTTGCGCACACGATAAGCTGGAGCGAGTGTGCCGAACA
GTTTTTCATCGATCCCAATCCATA-AAAGAAGCCAGCATCGAGAAATAGAAGCGGGATTTGCGGATCTAGTGAAGCTGGA
GGACTACCGAACAGGCCCT-------------------------------------------------------------
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>chr5D_1495
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---AACCAAATTGCATGCAATTCGC---TGTGTCTGTCTGCTTGACGCTACTAATTAACGCTTATAAAACTGC----C-A
TAGATGATGGTGATGTTGATACCCCGACGGAAAAGGACCTTTAGTCGGATGAAGCCCAGTGGGCGTATTATCAGCGCTGG
TGCAAGGCTCATAACAAGAAGTATGACCATGACGAGATGGCTCGCCGATTCGATGTTTTCAGAGATTTCGCGCTGTCGGT
GTACCAATGGAACACTGGTGTTCCTTCAGATCCAGTTAAAGTAGCCATTTTCATAAAGAAAAGAGAAAAGGTCAAATTAC
TTTTGTCGAAAGGCAAAGACGTCTCAAAGTACGATGATTGTCTTATTCAACTGGAATTAGGTCCATCTGCTGATGAGC--
-------------CCTAAAGCTATATGAGCGCTTGTTGGAGAAAGAAAATCCCAGAGATGGATGGATCCCTTCAGTGATG
TTGAAGATGTTACAGCAGAGTAGTCG----TAGTTTGCTTAGGGAAATCCCGGACCCTGAATGAGATGGACTCAACTCAC
CAAATCACTCCACTGTAATAAGTTATGCTT--------------------------------------------------
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>chr2A_1554
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--------------------------------------------------------------TATAAAACTATCATATGA
TAGATGATGTAAGG------AACCGACGGGCAG-----CTTGAGTCGGATAAAGCCCTATGGGCCTTCTACCAGCGCTGG
TGCAAGGCTCATAACAATAAACATGACCGTGCCGAGATGGCTCGCCGGTTCAAACTATTCAGAAGTCGGGCAAACTTTCT
GCACCAATGGAACTATGGTCTTCCTCCGGACCA---GGAAGCGGCCATTGTCCTTCAGAAAAGAGAAGAGATCAACTTGC
TTATTTCAAAAGGCCAAGAGATCTCACACTTCGACGATTCTCTTCGGCCAATGGAATTAGGTCCGTTCGCCGACGAGC--
-------------CGTTAAGTTG--TGAGCGCTCGTCGA-----------------------------------------
TTGAAGATGTTACAGCGGAGTAGTACGTAATAGTTTGCTTAGGGAAATCCCAGACCCTGAATGAGATGACCCCACCTCAC
CAAATCACTCCACTGTAAGAAGTTATGCTTTGTTGTTCCATGTGTGCTAAGTCATGATGTGTTCCATATGCACTAAGTCA
TG------------------------------------------------------------------------------
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>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------
---S----------------------------------------------------------------------------
-----S----------------------------------------------------------------------S---
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---------------S-------------------------------------S--------------------------
---------------------S-----------------------S----------------------------------
--------------S---------------------------S-------------------------------------
-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS----------------------SSS---S-S--SS--SSS---SS----S-SSSSS--------------SSSS---
-------------------------------S-----------------S-----------------S---S--------
------------------S---S---------S--S------------------S------SS-SSSSS---S-SSS---
------S---------SS-------------------------------SS--S-S---------------SS--S----
--SS----------------------S----S----SS--S-S-------SS-----------------------SSSSS
SSSSSSSSSSSSS--S-----S-------------------S--SSSS-S------------------------------
S-----S-----S-------------------------------------------------------------S-----
--------------------------------S------------S------S---S----------S--SS------S-
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_92
------------------------------------------------------------------------AGAAATCT
GTTCCCCGAGCG--------------------------------------------------------------------
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>reverse_1434
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-------------------------------------------------------------------------TGGTGCA
AGGGTCCCTTTTT-------------------------------------------------------------------
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>forward_1032
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----------------------------------------------------GAGGAGGCGTATTCCCCATG--------
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>reverse_2270
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-----------------------------ACAGGCACAAGCACAAGAGT-------------------------------
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