>input_sequence_64470
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---------------------------------------------------------------CCCCACCAAATCCCCAG
TCCAGTCCCCACCTCTCGAGAGGGTTTAGAAGCTTCCGG------------AGGCGAATCGGCGATGAGTTCCACCGGAG
---GCGTCGCCGGCCGCGGCAAGGCAAAGGCGACCAAGTCGGTGTCGCGGTCGTCCAAGGCCGGGCTCCAGTTCCCCGTC
GGCCGCATCGCGCGCTACCTCAAGGCCGGCAAGTACGCCGAGCGTGTTGGCGCCGGCGCCCCCGTCTACCTCTCCGCCGT
CCTCGAGTACCTCGCCGCCGAGGTATCCTAGACATCATCGATCCCCCTTCTCTTTTCGTTTTCCGTCAGTCGATCGCCGC
CCGTCCGATCTCGTGCGCCTCGCCCCGCCTCGCCCGATCGTTCGTTCGTTATCCGTGATTCGAGTCGGATTGGGGTTTGA
T-----TTGATCGTTTCCATTGCCGCCGGATACGTACGCAGGTGCTGGAGCTGGCCGGGAACGCGGCGCGGGACAACAAG
AAGACCCGGATCGTGCCGCGGCACATCCAGCTGGCGGTGCGCAACGACGAGGAGCTGAGCAAGCTGCTGGGCTCGGTGAC
GATCGCCAACGGCGGCGTGATGCCCAACATCAACCAGGTGCTGCTGCCCAAGAAGGCCGGGCCCAAGGGGGAGCTGGGCT
CGGCCTCCCAGGAGTTCTGAGCGCGCGCGGCTTCAAGGCGAAGAAGGAGAGGCCGTCCTGTCATGTGATCTTGTCTGCCT
GACGACGATGTTCATCTGAAGTTGTGGGTTGGGGTGTTTCGGGAGTCTGAAACTCGGGATGGAAAAAAACCTTGGTGTCT
TCTGGGCTCTGTCGTGGTTGAATGAGTGAGTCGATCGATCAGTAGAAGAGTGAAAA-TATATA-----CTATGTGGTTTC
GTATATGCGAAAATG---ATGGTGCGCAGCTGTC--TTTTAATATTGATTTGGTTCGGTTGTTTGAATGATTGAATGAAT
TCCCTGTGAAATT-------------------------------------------------------------------
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>chr4D_1_TraesCS4D01G053100
TCTGAAATTAAAGTGCAGGTGGGTAAGATGCTCAAGTCCGGAGTGCTATTACCCAGTTCCAATCCCTTTG-CTCACCTAT
CACGGCGCGCAAGAAGGGCCTAACATGGCGTGTATGTGTCGATTACATACATTTGAACTTATTGACTCTCAAGTGCAAGT
TTCCTTTATCTGTCATTGATGAACTCCTGGATGAATTGGAAGGTA-----------------------------------
------------------------------------CATCCTAGTTTTCGAAGCTCGATTTGCGAGCAGATTTCCACCAG
ATTCGACTGGCCC-AGGCGAAGAGTACCAAACTGCGTTTCATCCTCACAATATTGCCACCGCGAGTTTAATGTCATGGCG
TTCGATTAAGAGGCGC-CCAACAACCTTCCAAGCAGTTATTTAGAAATGTACTTGTGCAACTTTTTTGATTTTTTTCGGC
ATTTAG-AATGTGTTTTCTGAAGTGGGTACATATGTAGCAAGGGTTCATCCATGTATG-TTCCGTATAGTTTGCCCAATC
TCC-TGGTTCCGACTGCGCCATTTGACAATCCTTATAAACTAAAAATGTATGGACGATAAATTCAACATTGCGTACGCAA
GCTATGCAACACCAAATTGACACCATCAGTTTCGTATGAGTGAAATATTAGCACTGTCTAAAAGTTCAGAATGACCATAC
CGCAGCTTATATACAA-----CAATATAAAGTTCAGAGGACGAGATCTAAACTAGTC--------GCATGCATGCATGCA
TGTCTACTCGCGTGCACGTGATACATTCTTTTTCATGCTAC-----ACATGACCCTCAGATTGTCTATAAAACGAACAGC
CTCCATATAAACCGTTC--TTTTTCCCTGAAAAAAAAGGTGGATCAAAACAAAAACATTCTCCGAAAAGATATAAAAAAG
GAAAGAAGCAATTTATTGCAGAAGC-----TGGCGTCCGACGTCACCGATCCGCGCCTCGCCCGTCCCAGCCAATCACAG
CGCGCCTCGCACCCCAACCCTA-CGCTATAAAACCCGAGGCGCCGCCGCGGGTTCTCCTCCCACCCCACCAAATCCCCAG
TCCAGTCCCCACCTCTCGAGAGGGTTTAGAAGCTTCCGG------------AGGCGAATCGGCGATGAGTTCCACCGGAG
---GCGTCGCCGGCCGCGGCAAGGCAAAGGCGACCAAGTCGGTGTCGCGGTCGTCCAAGGCCGGGCTCCAGTTCCCCGTC
GGCCGCATCGCGCGCTACCTCAAGGCCGGCAAGTACGCCGAGCGTGTTGGCGCCGGCGCCCCCGTCTACCTCTCCGCCGT
CCTCGAGTACCTCGCCGCCGAGGTATCCTAGACATCATCGATCCCCCTTCTCTTTTCGTTTTCCGTCAGTCGATCGCCGC
CCGTCCGATCTCGTGCGCCTCGCCCCGCCTCGCCCGATCGTTCGTTCGTTATCCGTGATTCGAGTCGGATTGGGGTTTGA
T-----TTGATCGTTTCCATTGCCGCCGGATACGTACGCAGGTGCTGGAGCTGGCCGGGAACGCGGCGCGGGACAACAAG
AAGACCCGGATCGTGCCGCGGCACATCCAGCTGGCGGTGCGCAACGACGAGGAGCTGAGCAAGCTGCTGGGCTCGGTGAC
GATCGCCAACGGCGGCGTGATGCCCAACATCAACCAGGTGCTGCTGCCCAAGAAGGCCGGGCCCAAGGGGGAGCTGGGCT
CGGCCTCCCAGGAGTTCTGAGCGCGCGCGGCTTCAAGGCGAAGAAGGAGAGGCCGTCCTGTCATGTGATCTTGTCTGCCT
GACGACGATGTTCATCTGAAGTTGTGGGTTGGGGTGTTTCGGGAGTCTGAAACTCGGGATGGAAAAAAACCTTGGTGTCT
TCTGGGCTCTGTCGTGGTTGAATGAGTGAGTCGATCGATCAGTAGAAGAGTGAAAA-TATATA-----CTATGTGGTTTC
GTATATGCGAAAATG---ATGGTGCGCAGCTGTC--TTTTAATATTGATTTGGTTCGGTTGTTTGAATGATTGAATGAAT
TCCCTGTGAAATTTTAGTTACAGGAATCTGACTAGTCTTGGTCTGAAAGAAATGATCATCTCGCTGTGGAAATAAAACAG
CTCCTCTTAGCCCTGTGGAAATAAAACAGCATCAAACGCTGTACCTCTTTCAGAAATCAGCCAACATAGCTCTTAAGTTG
CAGAAGGTGATATAATAAGTATCA--------------------------------------------------------
-TCTGATTAACAAACGAAAATGCAGACAAAAATGCTATTCATGTATA--------TATATAGCTGTGGCTGCAACTGCAA
TGTCTGAATTCCTGGTTACTGTTTAATCAGCTTGCTTGCTTGTTGCTTT----------TTAATCAGCTTTGGAACGTCT
GAATTCATGTATATATATAGCTGTGGTTGCTATTCAGTTTGGTTTGATCATCCGAATGAATGAATTCCCAGGGGCGGTGT
AGTTTCCTGAATCTGATTACTCTGTCTCTACTCTTGTCTGAAACGACTGCGTGTTGTCGAAGAGATCATCTTGCTTCCTG
TGCCCGTTTCCTCTTCGTCCAGGGGAAACAGAACAGCAGTAAAATGCTGCTTGCACGAACGAATGTTGTTCTTGGCATTC
TCTCTGTCCCTCTCCCAGAGATCCGGAAACATTAGTCTGCAGTTGCAGAGCCAAAATCCACACGTGCCAGTGACTTCTGT
GCTAGTGCTCAGCAA---GTTTCACCATTGGATTCTTCTCATCATAGCAAAATGAGAATGTCTGATTAACAAAATGAAAA
AGATTACAAAAATGCTATACATCA---ACAGCCTTGTCTGCAATGCCTGAATTACACACCCTGATCAGTAACGAATCAAC
TTGCTTGCTGCTCGTCAAGTGTTGATC----GATCGGTTACTTCTTGCCGCTAAGGATGTTGGCCCTCATGGTCTCCAGC
TCTGCCATGTTGGCCTCGACGCCGGCGAAGGACGGCTCCGGGATCGGCTCCTCCACCATCTGCGACAGCCTGACGAGGCT
CCTGCAGGCCAGCACGGCGCGCGCGTCCATGGTCTCCATGGCCCTCAGGTAGAGGCAC
>chr4B_1
TCTGAAATTGAAGTGCAGGTGGGTGAGATGCGCAAGTCTGGAATGATAGTACACAGTTTCAATCCCTTCGCCTCACCTTT
CATGGTGCACAAGAAGGACCTGGCATGGCGTCTATGTGTCGATTACATACATTTGAACTTATTGACTCTCATGTCCAAGT
TTCCTTTACCTGTTATTGATGAACTCTTGGATGAATTGGTAGGTACTCCCTCCGTCCCATAATGTAAGATGTTTTTTAAG
TCAAAAAAGGTCTTACATTATGAGACGGAGGGAGTACATCCTAGTTTTCAAAGCTTTATTTGTGAGCAGGTTACCATCAG
ATTTGGTTGGCCCTAGGTGAAGAGTCCAAAACCGTGTTTCATTCTCACAAAATTGCCACT-CGAGTTCAATGTCCCGGCG
TTCGGTTAACAGGCGCTCCAGCAACCTTCCAAACAGTTATTTGGAGATGTACACGTGTAACTTTTTTGAATTTTTTAGAC
ATTTAGAAATGTGTTTTATGAAGTGGGTACATATGTAACAAGGGTTCATCCATGTATA-TTCCGTATAGTTTGCCCAATC
TCCCTGGTTTCGACTCCGCCGTTTGACGATCC---TAAATTTAAAATGTATGGACGATAAATTCAACATTGCGTACGCAA
GCTATGCAACACCAAATCGGCACCATCAGTTTCGTACGAGTGAAATATAAGCACCGTAT-AAAGTTCAGAATGACCATAC
CGCAGCTTATATACAA-----CAATATAAAGTTGGGGCAACAAGATCTGAACTAGTCCCATGCATGGAAGCATGTAG---
-----ACTCGCGTGCACGTGATACATTCTTTTTCATGCTATATAATACATGACCGTCAGATTTCCTATAAAACGAACAGC
CTCCATATAACCAGTTATTTTTCCGTG----AAAAAAAGTGAATCAAAACAGAAGCATTCTCCGAAAAGAAATAAAAAAG
GAAAGAAGCAATTTATTGCAGAAGC-----TGGCGTCCGACGTCACCGATCCGCGCCTCCCCCGTCCCAGCCAATCGCAG
CGCGCCTCGCACCCCAACCCTAACGCTATAAAACCCGAGGCGCCGCCCCGGGTTCTCCTCCCACCCCACCAAATCCCCAG
TCCAGTCCCCACCTCTCGAGAGGGTTTAGAAGCTTCCAGACCT-CCCCCAAAGGCGAATCGGCGATGAGTTCCACCGGAG
CAGGCGTCGCCGGCCGCGGCAAGGCGAAGGCGACCAAGTCGGTGTCGCGGTCGTCCAAGGCCGGGCTCCAGTTCCCCGTC
GGCCGCATCGCGCGCTACCTCAAGGCCGGCAAGTACGCCGAGCGCGTCGGCGCCGGCGCCCCCGTCTACCTCTCCGCCGT
CCTCGAGTACCTCGCCGCCGAGGTAACCTAGACATCATCGATCCCCCTTCCCT--------------AGTCGATCGGCGC
CCGCCCGATCTCGTGCGCCTCGCCCCGCCTCGCCCGATCGTTCGTTCGTTATCCGCGATTCGAATCGGATTGGGGTTTGA
T-----TCGATGGTTTCCGTTGTCGATTGATGCGTACGCAGGTGCTGGAGCTGGCCGGGAACGCGGCGCGGGACAACAAG
AAGACCAGGATCGTGCCGCGGCACATCCAGCTGGCGGTGCGCAACGACGAGGAGCTGAGCAAGCTGCTGGGCTCGGTGAC
GATCGCCAACGGCGGCGTGATGCCCAACATCAACCAGGTGCTGCTGCCCAAGAAGGCCGGGCCCAAGGGGGATCTGGGCT
CGGCCTCGCAGGAGTTCTGAGCCCGCGCGGCTTCAAGGCGAGGAAGGGGAGGCCGTCCTGTCATGT--------------
------GATGTTCATCTGAAGTTGTGGGTTGGGGTGTTTCGGGAGTCTGAAACTCCCGATGGAAAAAAACCTTGGTGTCT
TCTCAACTCTGTCGTGGTTGAGTGAATGAGTCGATCGATCGGTAGAAGAGGAGAGGAAATATATACTCCTATGTGGTTTC
TTATATGCGAACATATATATGTTGCTCAGTTGTC--TTTTATGATTGATATGGTTCGGTTGTTTGAATGATTGAATGAAT
TCGCTGTGAAATTTTAGTTACAAGAATCTGACTAGTCTTCGTCTGAAAGAAATGATAATCTCGCCGTGGAAATAAAACCG
CTCCTCTTAGCCCAGTGGAAACAAAACAGCATCAAACGCTGTTCTTTCAGGCGATTG-----AACATAACTCTTAAGTTG
CAGAAGTTAATTATCTCTCTTGATATTATTTTGCCACCACGAAGAACTGATTTCACCATTGAGAATGGGATTGTTGTGAT
GTCTGATTATCAAAATAAAATACAGAAAAATGCTGTCC------ATA--------TATATATCTGTGGCTGCAACTGCAG
TGTCTGAATTAGCCCCCCCCCCCTGAATATATCTCTGATTGCTGGTAATTTTTCCAAGATTGGTTGATG-----------
-------------------------------ATTTAGTTTGGTTTGATCATCCGAACGAATGAATTCCCAGGGGCGGCCT
AGTTTCAAGAATCTGATTA-------------------------------------------------------------
-------TTACTCTTCGTCCAGAGGAAACAGAAGAGCAGTAAAATGCTGCTTGCACGAACGAATGTTGTTCTTGGCATTC
TCTC---------------------------------------------------------------CATTGACTTCTGT
GCTAGTGATCAGCAATTTGTTTCACCATTCGATTCTTCTCATCACAGTAAAAAGAGAATGTCTGATTAACAAAATGAAAA
AGATTACAAAAATGCTATACATCA---ACAGCTTTGCCTGCAATGCCTGAATTACACACCCTGATCAGTAAAGAATCAAC
TTGCTTGCTGCTCGTGAAGTGTTGATC----GATGGGTTACTTCTTGCCGCTAAGGATGTTGGCCCTCATGGTCTCCAGC
TCTGCCATGTTGGCCTCGACGCCGGCGAAGGACGGCTCCGGGATCGGCTCCTCCACCATCTGCGACAGCCTCACGAGGCT
CCTGCAGGCCAGCACGGCGCGCGCGTCCATGCTCTCCATGGCCCTCAGGTAGAGGCAC
>chr4A_1
TCTGAAATTGAAGTGCGGGTGGGTGAGATGCGCAAATCTGTAGTGATAGTCCATAGTTCCAATCCCTTTGCCTCACATAT
CATGGTGCGCT---AGGACGTGACATGGCGTCTATGTGTTGATTACATATATTTGAACTTATTGACTCTCAGGTCCAAGT
TTTTCTTGCCTGTTATCGATGAACTCCTGGATGAATTGGTAGGTAT----------------------------------
--------------------------------------TCCTAGTTTTCAAAGCTTC----GTGAGCAGGTTACCATCGG
ATTCGGTTGGCCATAGGCGAAGAGTACAAAACCGTGTTTCATTCTCACAAAATTGCCACTACGAGTTCAATGTCCTGGCA
TTCGGTTAACAGGCGCTCCAACAACCTTCCAAACAGTTATTTGGAGATGTGCGCATGCAACTTTTTTGATTTTTTTAG-C
ATTTAAAAATGTGTTTTTTTAAGTGGGTACATACCTAACAAGGATTCATCCATGTATTTTTCCATATAGTTTGCCCAATC
TCC-TGGTTCTGACTGCGCCGTTTGACAATCC---TAAATTAAAAATGTATGGACGATAAATTCAACATTGCGTACGCAA
GCTATGCAACAACAAATCGACACCATCAGTTTCGTATGAGTGAAATATAAGCACCCTAT-AAAGTTCAGAATGACCATAC
CGCAGCTTATATACAATACAACAATATAAAGTTCAGGTAACAAGATCTGCACTAGTCGCATGCATGCATGCATGCATGCA
TGTCTACTCGCGTGCACGTGATACATTCTTTTTCATGCTAC-----ACATGACCCTCAGATTTTCTATAAAACGAACAGC
CTCCATATAACCAGTTATTTTTTTCCGTGAAAAAAAAGGTGAATTAAAACAAAAACA--CTCCGAAAAGAAATAAAAAAG
GAAAGAAGCAATTTATTGCCCAAGCTGGCGTGGCGTCCGACGTCACCGATCCGCGCCTCCCCCGTCCCAGCCAATCGCAG
CGCGCCTCGCGCCCCAACCCTA-CGCTAT-----------------------------------------AAATCCCCAG
TCCAGTCCCCACCTCTCGAG--GGTTTAGAAGCTTCCGGACCTCCCCCCAAAGGCGAATCGGCGATGAGTTCCACCGGAG
CGGGCGTCGCCGGCCGCGGCAAGGCGAAGGCGACCAAGTCGGTGTCGCGGTCGTCCAAGGCCGGCCTCCAGTTCCCCGTC
GGCCGCATCGCCCGCTACCTCAAGGCCGGCAAGTACGCCGAGCGCGTCGGCGCCGGCGCCCCCGTCTACCTCTCCGCCGT
CCTCTAGTACCTCGCCGCCGAGGTAAACCAT-CTTCGTCGATTCCCCTTCCCCTTTTCTC-----TCCGTCAATCGGCGC
CCGTCCGATCTCGTGCGCCCGA-------------------TCGTTCGTCGTCCGTGATTCGAATCGGATTGGGGTTTGA
TTTGATTTGATCGTTTCCATTGCCGCCGGATACGTACGCAGGTGCTGGAGCTGGCCGGGAACGCGGCGCGGGACAACAAG
AAGACCAGGATCGTGCCACGGCACATCCAGCTGGCGGTGCGCAACGACGAGGAGCTGAGCAAGCTGCTGGGCTCGGTGAC
GATCGCCAACGGCGGCGTCGTGCCCAACATCAACCAGGTGCTGCTGCCCAAGAAGGCCGGGCCCAAGGGGGATCTGGGCT
CGGCCTCCCAGGAGTTCTGAGCGCGCGCGGCTTCAAGGCGAAGAAGGAGAGGCCGTACTGTCATGTCATCTTGTCTGCCT
GACGACGATGTTCATCTCAAGTTGTGGGTTGTGATGTTTCGGGAGTCTGAAATGGCATGG---AAAAAACCTTGGTGTCT
TCTGGGCTCTGTCGTGGTTGAATGAATGAGTCGATCGATCAGTACAAGAGGGGAGG-AATATATACTCCTATGTGGTTTC
TTATATGCGAACATAT----GTTGCTCGGTCGTCTTTTTTAAGATTGATATGGTTTGGTTGCTTGAATGATTGAATGAAT
TCCCTGTGTAATTTTAGTTACAAGAATCTGACTAGTCTTAGTCTGAAAGAAATGATCATCTCGCCGTGGAAAT-------
----------------------AAAACAGCATCAAACGCTGTTCCTCTTTCAGAAATCAGCCAACATAACTCTTAAGTTG
CAGAAGGTGATATAATAAGTATCA--------------------------------------------------------
-TCTGATTAACAAAAGAAAATGCAGACAAA-ATGCTATTCATGTACTGTACATAGTATATAGCTGTGGCTG---------
------AATTCCTAGTTACTG-------AGCTTGCTTGCTTGTTGCTTT----------TTGATTGATG-----------
-------------------------------ATTCAGTTTGGTTTGATCATCCGAATGAATGAATTCCCAGAGGTGGTGT
GGTTTCCTGAATCTGATTACTCTGTCTCTACTCTTGTCTGAAATGAATGCGTGTTGTCGAAGAGATCATCTTGCTTCCTG
TGCCCGTTTCCTCTTCGTCCAGGGGAAACAGAACAGCAGTAAAATGCAGCTTGCACGAACGAATGTTGTTCTTGGCATTC
TCTCTGTCCCTCTCCCAGATATCCGCAAACATTATTCTGCAGTTGCAGAACCAAAATCCACAGGTGCCAGTGACTTCTCT
GCTAGTGCTCAGCAATTTGTTTCACCATTCGATTCTTCTCATCATAGTAAAATGAGAATGTCTGATTAACAAAACGAAAA
AGATTACAAAAACGCTATACAACATCAACAGCCTTGCCTGCAATGCCTGAATTACACGCCCTGATCAGTAATGAATCGAC
TTGCTTGCTGCTCGTCAAGTGTTGATCGATCGATGGGTTACTTCTTGCCGCTAAGGATGTTGGCCCTCATGGTCTCCAGC
TCTGCCATGTTGGCCTCGACGCCGGCGAAGGACGGCTCCGGGATCGGCTCCTCCACCATCTGCGACAGCCTGACGAGGCT
CCTGCAGGCCAGCACGGCGCGCGCGTCCATGATCTCCATGGCCCTCAGGTAGAGGCAC
>SNPs
---------S--------------S------S------S------S--S---S---------------------------
--S--S-----------S---S---------S---------------------------------------S--S-----
--------S----S-------------------------S----------------------------------------
-------------------------------------------------S-----SS-----S------S--S---S---
-----SS--------------------S----S-S-------S-------S--------SS------S------S-----
----S----S----------------------S---------S--S------SS----------------------S-S-
-----------------S-------------------S-------------------S----------------------
--------------------S-----------SSS----S----------------------------------------
-----------------S------------------------------S-----S--S-S--------------------
------------------------------------SSS--S------S-------------------------------
--------------------------------------------------------------S-----------------
----------S-S---S---------S--------------S----------------------------S---------
-----------------------------------------------------------S----------------S---
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
-------------------------S------------------------------------------------------
--------------------------------------------S--S--------------------------------
-------------------------S------------------------S-----SS-SSSSSS-----------S---
---------------------------------------------------------------S----------------
--------------------------------------------------------------------------------
------S-------------------------------------------------------------------------
------------------------------------------------------------------------S-------
------------------------------------------------------------------S-------------
-------------------------------------------------------SS-----------------------
-------------------------S------------------------S-S-SS-S----------------------
S----------S--S------S---S---S------------S------S------------------------------
----------------------S----------------S------------------------S-------------S-
-------------S-------S--------------------S-------------------------S-----------
--------------------------------------------------------------------------------
--------------S---------------S------------------------------------------------S
-------------S-------SS-S-SS---------------------------------S--SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------------
-------------------------------------------S--S---------------------------------
--------------------------------------------------------------------------------
-------------------S-----S--------S--------------S------------S-----------------
-----------------------------S-----------------S--------------------------------
------------------------------------S----------------------------------S--------
----------------------------------S---------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S--------------------------
>forward_32
------------GTGCAGGTGGGTAAGATGCT------------------------------------------------
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>reverse_1418
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---------------------------------------------------------GTTTTCCGTCAGTCGATCGC---
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>forward_49
-----------------------------GCTCAAGTCCGGAGTGCTAT-------------------------------
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>reverse_2159
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------------------------------------------------------------------------------AG
CTCCTCTTAGCCCTGTGG--------------------------------------------------------------
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