>input_sequence_64447
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----------------------------------------ATGGGTAGCATGTCATTCCTCAGCGACAAGTCCGCCAAGA
CATTCGTGGCCGGTCACCGGGGCATGATCGGCACAGCCGTCCACCGCAAGCTAGCAGCGCTCGGCTTCACCAGCATCGTC
GTCCGCACCCACGCCGAGCTCGACCTGACGTGCCAGCACGCCGTGGAGGCCTTCTTCGACGCCGAGCGGCCCCGCTACGT
CATCCTCTGTGCAGCCAAGTCCGGCGGCGTCCACGCCGCTCTGAGCGCGCCGGCCGAGTACCTGACCAAGAACCTGGGCA
TCATTTTCAACGTGATGACCGCCGCGCAGCGCTGCGGCTCCGTGCGCAAGCTGCTCATCCTGGCCAGCGCCACCATCTAC
CCCGAGGACGCGCGGCAGCCTATCCCGGAGTCGGCCTTCCTGTCCGGCCCACCGGCGCCTGGGAGCGAGTGGTACAGCAT
CGCCAAGATCGCGGGCATCAAGATGTGCCAGGCCTACCGTGAGGAGCACGGCATGGATGCCATCGCGGCGTCGCCCAACA
ACATCTACGGCCCGCGCAACCCCTTCCCTTCGGAGAGCTCCCACGTCATCCCCGCCCTCATCCGCCGTTTCCACCACGCC
AAGGTCACCGGCGCTCCCGAGGCCGTGGTCTGGGGCTCCGGCGCCGCGCTCCGCGAGTTCACGCACGTGGACGACCTTGT
GGAAGCCTTGGTGCTGCTGATGGACAGGTACTCCGGGCTGGAGCACGTGAACGTGGGGAGTGGCGACGAGATGAGCGTGA
GGGAGCTGGCGGAGCTGGTGAAGGAGGTGATCGGCTACGAGGGTCGCGTGGTATGGGACGCCAGCCGGCCGGACGGTGTG
CCCAGGCGGTTGATAGATAGCTCCAAGATGAGGAAGCTTGGGTGGAAGCCTAAGGTGGCGCTTAGGGACGGGCTCATGGA
CATGTACCAACTCTATTGCCGTCAACAAGATGAACCATGA----------------------------------------
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>chr6D_1_TraesCS6D01G323500
GGGCCTCTGCATCAGGACGATGCATGCAGCTATTACTTGGGCGTCTCCGGGCGTTTCCCTTTTTTACTTTTTCCTAGAAA
ATGTATTTTGATCTTGATCCTACTCACAATCTGTGCACTAGTATAAAATCTCAAGAACCTTTGGATAGACCTAAATAAAG
TGATCATGGTACCTTAGGGTATTGTAAAAGCGGTAGGTACTCCCTTTGGCTCGTCGTTAGGGCGTGAGGGCAACAATGAC
TGACTATGGAGAAGAGGGCGACCATGGGTGTTAGGCCGGCAACAATGAGGATCGCCACTAGGGTTTCGCCTGGGGGCAGC
GGCTGGGCACGCACGTACGCCGTGTTTTTTTTGGGTAACGTACCAACGCGGGCGACCGGGCATACGCGCACCGACCGGGC
GTACGGCGACACGGGCAGGTATGCCTATACGCTGTGTGCAAAGATGATACTATCTTTTAGGGCATGTACAACAGACGAGA
CGGATGTTGTCTATAATACTCCTCCACATCATTTGCAGACAACATGTACAGACAGCTACTACAACGGGCTGTCTCTAGAC
TCGTCTAAAACTTCATTACGTGCATGCATATTTTAAGGGATTTCCTTCCCACGATGCGGCCCATGACAAACGATGCACTC
GTACAACTGCAAAAGATCGTCTGTAACTAGCGATGTATATACGGCAACAGATCGTCGCTATTTCTACCGACAGCCTCGTT
CAGTTTCTCCTTTCTCTCTCTTCCACGTCAATTATTTTCCTATGTGGCAGGAGTTACAGACAGCTGATTGTACCCTGTTG
TACATGCCCTACGTTTTGCGGGGTTGTACCGAGACGGGACTCATTCAATAAAGCGGCCATGATTTCTCTCTAAAAAAAAC
GAGACAGAGGTGCATTAATTACGCTGCTATTTAAGGCCACCATTGCACTAGACAGCCACCAGGCAAGGCGCGCAAGTCTG
GTGTAGATCGCGCTTGCTCACCAGGGTACGTACGTGCTCCATGGGTAGCATGTCATTCCTCAGCGACAAGTCCGCCAAGA
CATTCGTGGCCGGTCACCGGGGCATGATCGGCACAGCCGTCCACCGCAAGCTAGCAGCGCTCGGCTTCACCAGCATCGTC
GTCCGCACCCACGCCGAGCTCGACCTGACGTGCCAGCACGCCGTGGAGGCCTTCTTCGACGCCGAGCGGCCCCGCTACGT
CATCCTCTGTGCAGCCAAGTCCGGCGGCGTCCACGCCGCTCTGAGCGCGCCGGCCGAGTACCTGACCAAGAACCTGGGCA
TCATTTTCAACGTGATGACCGCCGCGCAGCGCTGCGGCTCCGTGCGCAAGCTGCTCATCCTGGCCAGCGCCACCATCTAC
CCCGAGGACGCGCGGCAGCCTATCCCGGAGTCGGCCTTCCTGTCCGGCCCACCGGCGCCTGGGAGCGAGTGGTACAGCAT
CGCCAAGATCGCGGGCATCAAGATGTGCCAGGCCTACCGTGAGGAGCACGGCATGGATGCCATCGCGGCGTCGCCCAACA
ACATCTACGGCCCGCGCAACCCCTTCCCTTCGGAGAGCTCCCACGTCATCCCCGCCCTCATCCGCCGTTTCCACCACGCC
AAGGTCACCGGCGCTCCCGAGGCCGTGGTCTGGGGCTCCGGCGCCGCGCTCCGCGAGTTCACGCACGTGGACGACCTTGT
GGAAGCCTTGGTGCTGCTGATGGACAGGTACTCCGGGCTGGAGCACGTGAACGTGGGGAGTGGCGACGAGATGAGCGTGA
GGGAGCTGGCGGAGCTGGTGAAGGAGGTGATCGGCTACGAGGGTCGCGTGGTATGGGACGCCAGCCGGCCGGACGGTGTG
CCCAGGCGGTTGATAGATAGCTCCAAGATGAGGAAGCTTGGGTGGAAGCCTAAGGTGGCGCTTAGGGACGGGCTCATGGA
CATGTACCAACTCTATTGCCGTCAACAAGATGAACCATGAATAGATTGGATGTTTTTCCACAAAAAACAAGATGAAGCAT
GAATTCATGCAACAGGATTTATATATTTGTTCCAAGATTGTTCCACTTAATTTGTTATTTGATAAAAAATTAAAGAGCGG
GGATGTAACCGCGGGTATGTTTAGATCTGAAAATTGTGGTGGTGGGGTAAGTACTGGTTAGCCTGCATAACGGAGCGAAA
TTCGGAATATATGCTGCTGCGTGGTACAACTTGTCAGGAAATCATACATCAATTGTACGATGATGGGTGGTAGATGGGCG
ATAGTTTTTTTTTGTGTGTGTGAAAATAATTCAGATCTATTATCAAAGTTCACCGGAAGTACAAAACACCTAAAACATAA
TAAAAATTACATCAAGATACCGAGACCACCGAACGATCACAATCGCTGCCAGAACGAGCCGTCCACGTGCCGCTGTCGTC
CCCCCC--------------------------------------------------------------------------
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-CCTATCGGAGCCGGCTTGACCTCGTTGATGACAGTCGGGAAGTCTTTTCCTCTCTCTTTCTCAATCTCTGCGTTCTCAG
AGCTAGCTCCAGCAAGCATTACATGCACTAGTGGTTGGGGCCCGCTATTGCGTGGCCGCCTTCAAGTAGGATGAAGGTGT
TCTCTCGTTTCTCCATCTCCAAAAGAGAGAAGAAAACAATCCTCACCTTAATGTGACAAAAAAGGAAAACTTTTCTCACC
TCAGTCAACCAGCCAGTGACATGTGGCCCTCACCATAGGAGTAACACTAATATTTGGTATGATATTGGTTGCACGCTACA
CATGTCGAGCGCTCACCATTGGAGCAATTTAGATCATGATGCACGAGGTATGATGGTTGATATTAGTTGGATCTGCCTCT
TTGGGTCTTTTTATATTGGGATAGATATAGATATAGATAAAGCAACAACCAACATATAAACCGATAAAACCACAACACAG
CAGACCAACACTCACACTCACCCAAGGCTAGATACATAGGTGCCAAAGACCAACAACAACACCCCGATCGATACC
>chr6B_898
ATTG----------------------------------------------------------------------------
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---------------------CGCTGCTATTTAAGGCCACCATTGCACTAGACAGACACCAC-----GCGCGCAAGTCTG
GTGTAGATCACGCTTGCTCACCAGGGTACGTACGTGCTCCACGGGTAGCATGTCATTCCTCGGCGACAAGTCCGCCAAGA
CATTCGTGGCCGGTCACCGGGGCATGATCGGCACAGCCGCCCACCGCAAGCTAGCGGCGCTCGGCTTCAACAGCATCGTC
GTCCGCACACACGCCGAGCTCGACCTGACGTGCCAGCACGCCGTGGACACATTCTTCGACGCCGAGCAGCCCCGCTACGT
CATACTCTGTGCTGCCAAGTCCGGCGGCGTCCACGCGGCTCTGAGCGCGCCGGCCGAGTACCTGACCAAGAACCTGGGCA
TCATTTTCAACGTGATGACCGCCGCCCAGCGCTGCGGTTCCGTCCGCAAGCTGCTCATCCTCGCCAGCGCCACCATCTAC
CCCGAGGACGCGTGGCAGCCTATCCCGGAGTCGGCCTTCCTGTCCGGCCCGCCAGCGCCCGGTAGCGAGTGGTACAGCAT
CGCCAAGATCGCGGGCATCAAGATGTGCCAGGCCTACCGCGAGGAGCACGGCATGGACGCCATCGCGGCGTCGCCCAACA
ACATCTACGGCCCGCGGAACCCCTTCCCTTCGGAGAGCTCCCACGTCATCCCAGCCCTCATCCGCCGTTTCCACCACGCC
AAGGTCACCGGCGCTCCCGAGGCCGTGGTCTGGGGCTCCGGCGCCGCGCTCCGCGAGTTCACGCACGTGGATGACCTTGT
GGAAGCCTTGGTGCTGCTGATGGACAGGTACTCCGGGCTGGAGCACGTGAACGTGGGGAGTGGCGAGGAGATGAGCGTGA
GGGAGCTGGCGGAGATGGTGAAGGAGGTGGTCGGGTACGAGGGTCGCGTGGTGTGGGACGCCAGCCGGCCGGACGGTGTG
CCCAGGCGGTTGATTGATAGCTCCAAGATGAGGAAGCTTGGGTGGAAGCCTAAGGTGGCGCTTAGGGACGGGCTCATAGA
GATGTACCAACTGTATTGCCGTCAACAAGATGAAGCATGAAT--------------------------------------
----TCATGCAACAGGCTTCATATC--TGTCCAAAGATTGTTGCACTTAATTTGTTCTTTGATA----------------
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>chr1A_2259
AAAATAATTT----------------------------------------------------------------------
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--------------------------------AGATCTATTATCAAAGTTCACCGGAAGTACAAAGCACCTCAAACATAA
TAAAAATTACATCAAGATACCAAGACCACCAAACGACCCCCACCGGTGCCAGAAGGAGCCGCCGACGCGTCGCTGTCGCC
GCTCCCCTATCGGAGCCAGCCTGACCTTGTCGATGACAGCGGGGAAGTCTCCGTACACGTGCCTTAAGGACTAGCGCTCT
GGAGCCGCAGTCGTCGTCGTCGTTAAACCCTTGAATAGATCTGAAGCAAATGACACCAAATCTCGCCACATGACAAGAAA
CCCTGACCTCACCGCCCCAAGAAGACGGCAGGAATCTGTGCCAGAGCTCCGTCGACTAGTGGCATCATTGTTTTCTATAA
TTGCATAAACCTTTTTTTTTCTGTTCCATGAACTTTTAAAAAAATCATAAGACATATTTTTAAACATACGGATGTTTATT
AAATGTATGTATAATTTGTGAATTGCACTAAATTCTTTTTTTCAAATTTTGCAAATATTTATTTTACATTTTCATGAACA
TATATTCTAGCGAGACATAGACGTTTCCAACGGCATGAGCCTCCCTATTTGTCTAAACATATTTTTAATTTATTTTTATA
AAAACTAGGATTTTTTTGAAATTCAGGAACAATTTTGTAATTATTGATCAATTATAAAATTCATGAAAACTTGGATTTCA
ATTTTAAAAAAACTTCCTAAACATTTTTATAATTCATGATTTTCTAAAATTATTAAAAAAATCAACTTGTTTGTTTTTTA
TTTTTTTGTCAAAAACAATAAACAAAGACAAAAAAATGAAAAAATGAAAAAATGAAAGAAAAATAACTAAATAAAACAGG
GTGCCCCCACCTTCGCAGATGAGCCCGGCCCAAAAGCGCGCGGGGCCGGACATACGTCGGCTCCACCACCCCGTGCACCC
TCTCGGAGGACTCACGCAAAGGAGCAACCAAATCACAACTGCTCGCGTTACGGGCTGAGCCTAATAGCGTTCCTCATGCC
ATTTGGTTGACTAAGCAATTTTGTCCCACAAACTGCAGAGCTTTATCAATAGTTTGACTAAGCAAGTTTGTGAAAGCAAT
AGTAATGCTCTGGGCTATATGGTGGGTGAGAAGGAAGGCAATACATGAAGAGCTTTATCAATCGCCTCACTCCACTTTGT
GTTTTATCAACAGGTTCCTAGTGGATCTATCCCTAGTTCCTCGCAAAGAAATCGCGGTGAAGCAGAACCGTAATGATGTA
CAGTAATGATGTACATCCCAAGCCGAAGTGGTGCCCTCCTCCTGTGGGGTGGGCAAAACTAAATGTTGATGCCGCAATCT
CAAGAAACGCAGATAGAGGAGCAGTGGCAGTGGTATGTCAAGATTATACTGGCTTGTATCTGGGAGCATCAGCAGTGGTT
ACAGATAATATTACTAAGCCGGAGACGCTTGAGGCAATGGCTTGTAGTAAAGGGTTATCCTTGGCCCTAGACATGAACCT
GCAGCACATCCAAGTCAGCACTGATTGTGTAGCGACGATAAAACATGTGAATGAGGCGTTCCTGGGTCCAAGCAAAGTCA
TCGTGGACGAGATCAAGGCAAAGCTGCAACTATTTCCTTATTCAGTACTTATTTTTGAGAAACGTGAATGTAATTTAGAA
GCTCATCTGCTTGCTAAAGCTGCTACTTCATTAGCCTGTGGACGCCACCTTCGGCTCATGGGAACCCCAGGCATCACTTG
TATCCCCATGACGATTGATACTAAATAAAATGCAGCTTTTATCCCTAAAAAAAGCAATTTTGTCCCTAACATGCCCTCTT
AAAATAGCACTAGCCGTTGGCTAAAAGAAAACGTGACTCTAATTACTGATAAACTCATAAAAGTTCATGAATTCAAACAT
ATGTTCATAAGTTAAAACAAAGTTCCTAAAATAAAAATTATTAGTGTATTTAAAAAATAATTCAAAAGCTAAAAATTATT
CTAGAATTTCGAAAATCTTTGTGAATTTTACAACTGTACAAGATTTAAAAGAAATATTTCTAATTTGAAAAAAAATGTTA
TACAATTTTGAAAAGGCTCGCAATTTTTAAAATTGTCACGAAATGAAAATAAAATAAAATACACAATGTTTTTTAAATAT
CCACAATTTTTAAAAATGCTTAACTACACAAATATTCTTAGTTAAAAAACACTTTCCCTATTTTAAAAATATTTGTGAAT
TTAAAATTATTTAAATAAATCAGTATAACATTTATGAATTATAAATTTTTTAACGAATTTAAAATTAATAATAAACTTCC
AAAATGACAATAAAAAATTATATATATATATGAAATATGTTAAAAGTTTCTTTGAAATCACGAATTTAAAAAATATTCAC
CAAATGAAAATATTTAAAATATAATAATATTGAATAATTCTTCAAAAGGTCTCGAATTTTAAAAATACTTGCCAACCATA
AAATGGGGGAAAATATAAAATAAGGACCCAAAATTTGATAAACAAATGAAAAAAAACTAGTTGAAGTAAAATATAATATA
AAAAGACAGGAATAAAGCAGAACCTTTCTAAAATTTGGTCCGAGCACCTCGCGCTACACTTGAAATAATATTCATGGAGT
ATTTCGGTGCAATCTTTCAGTCGTGAAACGGCTTGCGTCAGTACTATATCTCGCTTACCGCGAGACGGATGGTAGCCTCG
CACAGAGGGATTGCTGAAGTGGGCCAGCTCAAGAAACAATTTTGTGAACCTTCTAAAGACCAGTTCAGACCGATTTTGGT
CGTTTAGGGGGGAGGTTTGGCGAGGGTTTCCCCTGTTTTTTCTGTGCTTTTGTATATTATTTTTTGGTTTTTGAAATTTT
GTCTTTCTTTTTATTTTTATTTTTATTTTTCAACTATCGTGTTGACTTCTTTTTATACATGCTGGACATTTTTGTATACT
GCTTGAACATTTTTTGATGCACATTAAACAGCTTTCATATATAGGTTAACCATATACTTTAGCATTTGTAAAATACATTA
TGAACATTTTAAAATACACGTTCAATATTTTTTCAAAAAATATGAATATTTTTTCAAGCGCGGAAATATGTTTGAAGTGT
TAGAACATTTTTCTGCGAAAATAATTCAGATATATTATCAAAGTTCACCGGAAGTACAAAGCACCTCAAACATAATAAAA
ATTACATCAAAATACCAAGACCACCAAACGACCCCACACCGGTGCCAGAACGAGCCGCCGACGCATCGCTGTTGCCGCTC
CCCTATCGGAGCCGGCCTGACCTTGTCGATGACAGCCGGGAAGTCTT---------------------------------
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>SNPs
SSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS----------------------------------S-----SSSSSS-------------
---------S-------------------------------S-------------------S------------------
---------------------------------------S---------------S-------------S----------
--------S--------------------------------------SS-S----------------S------------
---S--------S-----------------------S-------------------------------------------
-------------------------S-----------S-----S-----------------S------------------
------------S-------------------------------------S--S-----S--S-----------------
---------------------------------------S-----------------S----------------------
----------------S-----------------------------------S---------------------------
-----------------------------------------------------------------------S--------
------------------------------------------------------------------S-------------
--------------S--------------S----S-----------------S---------------------------
--------------S--------------------------------------------------------------S--
S-----------S---------------------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS------------S--S----SSS---S-S---------S-------------S-------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------S-----S--------
---------------------S--------S-----S-S-S-S--S--------S------S-S---S-S--------S-
S-S-----------------------------------------------------------------------------
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----------------S------S--S--------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_942
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------------------------------------------TTGCACTAGACAGCCACCAG------------------
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>reverse_5595
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--------------------------------------------------------------------------TCTCAG
AGCTAGCTCCAGCA------------------------------------------------------------------
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