>input_sequence_64430
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----------------------------------------------------------------------ATGCACGCGT
GCTTCCATGGCG---------------GCGGCAGGACCAAGACCATCAGCATCATCAGGGACCTCACCAAGAACGTACGC
CGGCAGCCCAGCGCCATCCGTCAGATTCCGTTCCATCCTTCCCGTGTACGGTA----------CGCGCGCGGATGCATCT
AAC---------GTGTCTGTGTGTGTGTGTGTGTGCAGATGAAGTCCATGTCGCTCAAGATGAAGGCGGGCGGCGGCGGG
GGCAACGCGCGGGCGAGGCGACGGCGGCGGAAAGGGGCGGAGGGGGAGGAGGACCTGGAGCCGCAGGACAAGGACGTGGC
AGCGGCGTCGGCGTCCGCCAAGATCGCGCCGGAGGAGCGAGAGGGGAAGACGCGTGCGCCATGCGACCGGTGCCGCTCCG
GCCTGGAAGACGTCCCCGAGGAGGGGGAAGAGGAGGAGGCGGCGG------CGGACCATGCGACCGGGGAGGAGCAGAGC
GACGGCGAGTGGGTGGCGGAGCCGGAGCCCGGGGTGCTGATGACGCTGGTGTCCCGCCCCGACGGCACCAACCACCTCCG
CAAGCTGAGGTTCCGGGAGGAGCTGTTCGACGGGCCCCGGGCGGCGCAGCGCTGGTGGGCGGACAACTACGACAGCATCG
TCGAGCTCTACAGCATCGTGCAGTCCACCGGAGGGTCGCACGAGGAGGAGGACGCCGAGGACGGCATCGACGACGACGAG
CCCGCGACGCCGTGCCAGTCCGAGGACGACCACCACCAGCCGCGGAGGTGGCCGCGTCTGGGGTGCGACTCGGCCTCCAC
ATCCGCCGGCCCGTCCAGCGGAAGCGGAAGCGGCAGCGGCAGCGGCGGTGGGTCGGCCAGCACCGTGGGCTCGCCGATAC
TGGGCCTCGTCGTCGCCACGCCTCCTAACAACAGTAGCAGCAGGGGCGACAAAAGCCCAGGCCAAGCACAATCACACAAA
CACAAGTGTCGTTCCTTGCACATAAATTAG--------------------------------------------------
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>chr2D_1_TraesCS2D01G333900
TTGACGCTTAAATCAAAAGTTAAAGTTTTTTAAACTTTTTGAACCACCTAATAAATGCACGTGTGGACAAGATTACTTTT
TTGACGGACTGTGTAGAACATGTGGGCTACTCCTTCCATATTTGGAAGAGCGCTTGATCCCTTCAACGGGCGCTCGGGTG
TCATCTAGCCGTGTCCATATTTTTTTGCTAATATACCCAACAATTACTACCCGGTTACTATTTTTGGGGGTGTTTGGTTC
CAGAGACTTTTTGGTAGCAACAACATCGAGCGAGAAAGTAGCAACAACTAAATTTTCTTAACCAAAACAATAAATAGTAC
TGGTACTGATTGAGAATAAAGTCAACCCAATCTTTTCTT-GAAAAACCATTTTGGTTTCGGTGCACTTCAATTCAAACGC
GAAGATGGAGTAATAAACCTCGCCAGCGATGGTTGGGATTGCGCGA----GTATCACAACGCGACGTGTGAGCTGGTGCA
ATTTATGTTTCAGGCGTATCCCGCCGGCCCGTATCCTCTCCTTCATTGATGCGTACGTGCAGATGTTCAGACTACGGGCA
AGCTGGTAATGCGACGCAACGTCTGGATATGGCATGAATGAACCTGGCCTGCGCGGGGTGGAGCGATAATTCAAAATCCG
CCGTACTACCGCGCGCTCGCAGCCCCGGTACGAGCGGGTTGGTTGGTTCGGCTTCGGCTGGCC---AGTAGTACTCGAGT
ACCGCCCCGAAATCTAATTTCGGGCCATAACAATCGGCAATCCGCATTAACTGCATGCGGCT-------CTGCTGCCCCA
GATCAGATGGACACGCGCGTTCGTCCTCGCGTTAATCCCGTGCCGCCCCCTCT---------GCTGTGCGCACGCCCATT
TGAAATCCCCACCAACACCTCCTTCCTTCGGCCAGAGTTTTCGGAGCAGAGCAGCGCAGAGCGGGGCAGGGTTTTCGCGG
CGCA--CCACCGTCCAGGTGTCGTCGTCTAGGAGGAGGGAGGGGAA----GGGCGGCCTGGATCGACGAGATGCACGCGT
GCTTCCATGGCG---------------GCGGCAGGACCAAGACCATCAGCATCATCAGGGACCTCACCAAGAACGTACGC
CGGCAGCCCAGCGCCATCCGTCAGATTCCGTTCCATCCTTCCCGTGTACGGTA----------CGCGCGCGGATGCATCT
AAC---------GTGTCTGTGTGTGTGTGTGTGTGCAGATGAAGTCCATGTCGCTCAAGATGAAGGCGGGCGGCGGCGGG
GGCAACGCGCGGGCGAGGCGACGGCGGCGGAAAGGGGCGGAGGGGGAGGAGGACCTGGAGCCGCAGGACAAGGACGTGGC
AGCGGCGTCGGCGTCCGCCAAGATCGCGCCGGAGGAGCGAGAGGGGAAGACGCGTGCGCCATGCGACCGGTGCCGCTCCG
GCCTGGAAGACGTCCCCGAGGAGGGGGAAGAGGAGGAGGCGGCGG------CGGACCATGCGACCGGGGAGGAGCAGAGC
GACGGCGAGTGGGTGGCGGAGCCGGAGCCCGGGGTGCTGATGACGCTGGTGTCCCGCCCCGACGGCACCAACCACCTCCG
CAAGCTGAGGTTCCGGGAGGAGCTGTTCGACGGGCCCCGGGCGGCGCAGCGCTGGTGGGCGGACAACTACGACAGCATCG
TCGAGCTCTACAGCATCGTGCAGTCCACCGGAGGGTCGCACGAGGAGGAGGACGCCGAGGACGGCATCGACGACGACGAG
CCCGCGACGCCGTGCCAGTCCGAGGACGACCACCACCAGCCGCGGAGGTGGCCGCGTCTGGGGTGCGACTCGGCCTCCAC
ATCCGCCGGCCCGTCCAGCGGAAGCGGAAGCGGCAGCGGCAGCGGCGGTGGGTCGGCCAGCACCGTGGGCTCGCCGATAC
TGGGCCTCGTCGTCGCCACGCCTCCTAACAACAGTAGCAGCAGGGGCGACAAAAGCCCAGGCCAAGCACAATCACACAAA
CACAAGTGTCGTTCCTTGCACATAAATTAGACAGAAATGATTGTTATTTTTAGGTTTTTCTCCAGTCTTTCGTGCCCATC
AATCTCACAGAAGCAGGTCTGGTCACGGGTTTTACAGCTTTTGTTTATACTGATTCACTGGTTTTCTACGGTAGCTCGGT
GGACATGTCGTCCTGCTTGTGCCTGTGCC----------CCTGAAGACGTCATTCTCAATTGTATCGATGC--TTCTGCA
AGGCTGTAAACAACAGCCAGGCATTTTCCACAGAGAGGGGTGGCTTGGGCAGTTGGAGCAGTTAAGATCGGCTATC----
---GATGGAACATGAG----TAATGACAAGAATGTTTAATTCTGGGAGGATGTCTTATTTGGGCACTGCTGCCTGGCTAC
ACAGTTCTGGGAGCTATATACTCCACTAC---------------------------------------------------
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---------------------------TGTTAATGAACAGAATTACTCCATTGCCCAGGTCTGTGATGGTGTGCATTCAA
AGCTTCAGTTTCGTAGAACTGTTGATGATCGCCTCATGGATCAATTGCTTCACCTTTGTGAGATTGCTCGTGGTGTCTCT
CTGTCTGACGAGAAAGAATGTTATGCATGGATGTATGACACA--------TC----------------------------
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-----------------------------------------------TAGTTTGTATTCGGTGAAATCCCTTTATGGTTT
ATGCCATTGTGAGTAATCCAGGATTATTCCTGCTT---ATACCCATTCTGCTTGGAATATTACTACTCTTAAAGTGTGCA
CGTGTTTCTTAGGT------------------------------------------------------------------
-----------------TTTTAAG-TAACAACAAAATACTGACTAGAGATAAC--CTTGCTAAACGACCAACTGTGGACG
GCTCATCAAGTCATCATGTGT-TATTTTGTGCTGAAAATGAAAGTGCCATCACTTAGTCTTTGCTTGGGTGTTTGCTAAA
AA---CATTTGGAAGCTCGTCTCTGACGTACTTTCGCTTGACATGGGGTTTTTT-TTTCAACCTGTTGCTCGCTGGAAAA
CAAAATGCCTGCAATGTTGATTTCTGCTGCTGTATCATGGACTCTTTCGAGCTATCGCAGTGCTATCTGTTTCCAGGGCA
ATAGATGAAAAGGCTTGCTGGATGTATG
>chr2B_316
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---------------------------------------------------------------------------AGTAC
TGGTACTGATTGAGAATAAAGTCAACCCAATATTTTTTTCGAAAAACCATTTTGGTTTCGGTGCATTTCAATTCAAACAT
GAAGATGGAGCAATAAACCTCGCCAGCGTTGGTTGGGGTTGCGCGAGTATCA--CACAAGGCGACGTGTGAGCTGGTGCA
ATTTATGTTTCAGGCGTATCCCGCCGGCCCGTATCCTCTCCTTCATTGATGCGTACGTGCAGATGTTCAGACTACGGGCA
AGCTGGTAATGCGACGCAACGTCTGGATATGGCGTGAATGAACCTGGCCTGCGCGGGGTGGAGCGATAATTCAAAATCCG
CCGTACTGCCGCGCGCTCCCAGCCCCGGTACGAGCGGGTTGGTTGGTTCGGCTTCGGCTGGCC---AGTAGTACTCGAGT
ACCGCTCCGAAATCTAATTTCA-GCCATAACAATCGGCAATCCGCATTAACTGCATGCGCCT-------CTGCTGCCCCG
GATCAGATGGACACGCGCGTTCGTCCTAGCGTTAATCCCGTGCCGCCCCCTCT---------GCTGTGCGCACGCCCATT
TGAAATCCCCACCAACACCTCCTTCCTTCCGCCAGAGTTCTCGGAGCAGAGCAGCGCAGAGCGGGGCAGGGGTTTCGCAG
CGCA--CCACCGTCCAGGTGTCGTCGTCTAGGAGGAGGGAGGGGAGGGGCGGGCGGCCTGGATCGACGAGATGCACGCGT
GCTTCCATGGCGGCGGCGGCGGCGGCAGCGGCAGGACCAAGACCATCAGCATCATCAGGGACCTCACCAAGAACGTACGC
CGGCAGCCCAGCGCCATCCGTCAGATTCCGTTCCATCCTTCCCGTGTACGGTATGTA--CGCGCGCGCGCGGATGCATCG
GCGGCCTGACGTGTCTGTGTGTGCGTGTGTG----CAGATGAAGTCCATGTCGCTCAAGATGAAGGCGGGCGGCGGCGGG
GGCAACGCGCGGGCGAGGCGACGGCGGCGGAAAGGGGCGGAGGGGGAGGAGGACCTGGAGCCGCAGGACAAGGACGTCGC
GGCGGCGTCCGCGTCCGCCAAGATCGCGCCGGAGGAGCGAGAGGGGAAGACGCGTGCGCCATGCGACCGGTGCCGCTCCG
GCCTCGAAGACGTCCCCGAGGAGGGGGGAGAGGAGGAGGCGGCGGCGGCGGCGGACCATACGACCGGGGAGGAGCAGAGC
GACGGCGAGTGGGTGGCGGAGCCGGAGCCCGGGGTGCTGATGACGCTGGTGTCGCGCCCCGACGGCACCAACCACCTCCG
CAAGCTGAGGTTCCGGGAGGAGCTGTTCGACGGGCCCCGGGCGGCGCAGCGCTGGTGGGCGGACAACTACGACAGCATCG
TCGAGCTCTACAGCATCGTGCAATCCACCGGAGGGTCGCACGAGGAGGAGGACGCTGAGGACGGCATCGACGACGACGAG
CCCGCGACGCCATGCCAGTCCGAGGACGACCACCACCAGCCGCGGCGGTGGCCGCGTCTGGGGTGCGATTCGGCTTCCAC
CTCGGCCGGCCCGTCCAGCGGAAGCGGAAGCGGCAGCGGCAGCGGCGGTGGGTCGGCCAGCACCGTGGGCTCGCCCATAC
TGGGCCTCGTCGTCGCCACGCCTCCTAACAACAGTGGCAGCAGGGGTGAGAGAGGCCCAGGCCAAGCACAATCACACAAA
CACAAGTGTCGTTCCTTGCACATAAATTAGACAGGAATGATTATTATTTTTAGGGTTTTCTCCGGTCTGCCGTGTCCATC
A-TCTTACAGAAGCAGGCTTGGGCACGGGTTTAACAACTTTTGTTTATACTGATTCACTGGTTTTCTACGGTAGCTCGGT
GGACATGTCGTCCTGCTTGTGCATGTGCCATGCCTTCCCCCTGAAGACGTCATTTTCATTTGTATTCGATACTTTCTGCA
AGGCTGTAAACAACGGCCAGGCATTTTCCTGCA--AGGGCTGGCTTGAGCAGTTGGAGCAGTAAAGATCGGCTATGGCCT
ATTGATGGAACATTTTTGTATAATGACAAAAATGTTTAATTCTGGGAGGATGTCTTATTTGGGCACTGGTGCCTGGCTAC
ACAGTTCTGGGAGCTACTCCCTCCGTTCCTAAATATAAGTCTTTGTAGAGATTTTACTATGGACTAGATACAGAGCGAAA
TGAGTGAATCTACGCACTAAAATGCATCTATATACATCCGTATTTGGTTCATAGTGGGATCTCTACAAAGACTTACATTT
AGGAACGAAGGGAGTATATACTACTGTTGTTAATGAACAGAATTGCTCCATTGCTCAGGCCTGAGATGGTGTGCATTCAA
AGCTTCAGTTTCGTAGAACTGTTGATGATCGCCTCATGGATCAGTTGTTTCACCTTTGTGAGATTGCTC-TAGTGTCTCT
CTGTCTGACGAGAAAGACGGTTATGCATGGATGCATCACCCATCTACTCCCTCCGTTCCTAAATATTTGTCTTTCTAGCC
ATCTCAAATGGACTACAATATATGGATGTATGTAGTCATGTTTTAGAGTGTAGATTCATTCATTTTGCTCCGTATATAGT
CATTTATTGAAATCTCTAGAAAGACAATTATTTAGGAACGGAGGGAGTAGTTTGCAATCAGTGAAATCCT-------TTT
ATGCCATTGTGAGTAATCGAGGATTATTCCTGCTAGTAATACCCATTCTGCTTGGAATAGTACTATTCCTAAAGTGTACA
TGTGTTCCTTAGGT------------------------------------------------------------------
-----------------TTTTAAACTAACAACAAAATACTGACTAGAGATAAC--CTTGCTAAACGCCGAACTGTGGACG
GTTCATCAAGTCATCATGTGT-TATTTTGTGCTGAAAATGAAAGTGTCGCCACTTATTCTTTGCTTGGGTGTTTGCTAAA
AAAAACATTTGGAAGCTCGTCTCTGACGTACTTTCGCTTGACATGGGTA-TTTATTTTGCACCTGTTGCTCGCTGGAAAA
CAAAATGCCTGCAATGTTGATCTCTGCTGCTTTATCATGGACTCTTTCAAACTATCGCAATGCTATCAGTTTCCAGGGCA
ATAGATGAAA------------------
>chr2A_318
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-----------------------------------------------------------------------------TAC
TGGTACTCATTGAGAATAAAGTCAACCCAATATTTTC-TCGGAAAGCCATTTTGGTTCCGGTGCATTTCAGTTCAAACGC
GAAGATGGAGTAATAAACCTCGGCAGCGATGGTTGGGATTGCGCGAGTACGTATCACAACGCGACGTGTGAGCTGGTGCA
ATTTATGTTTCAGGCGTATCCCGCCGGCCCGTATCCCCTCCTTCAATGATGCGTACGTGCAGACGTTCATACCACGGGCA
AGCTGGTAATGCGACGCAACGTCTGGATATGGCATGAATGAACCTGGCCTGCGCGGGGTGGAGCGATAATTCAAAATCCG
CCGTAC-----------CCCAGCCCCGGTACGAGCGGGTCGGTTGGTTCGGCTTCGGCTGGCCAGTAGTAGTACCCGAGT
ACCGCTCCGAAATCTAATTCCAC-CCATAACACTCGGCAATCCGCATTAACTGCATGCGCCTCTGCTGACTGCTGCCCCG
GATCAGATGGCCTCCCCTCCCT------GCGTTAATCCCGTGCCGCCCCCCTCCTGCTCTGCGCAGTGCGCACGCCCATT
TCAAATCCCCACCAAAACCTCCTTCCTTCCGCCAGAGTTTTCGGAGCAGGGCAGCGCAGAGCGGGGCAGGGTTTTCGCGG
CGCACCCCACCGTCCAGGTGTCCTCGTCTAGGAGGAGGT------------------CTGGATCGACGAGATGCACGCGT
GCTTCCATGGCGGCGGC------GGCAGCGGCAGGACCAGGACCATCAGCATCATCCGGGACCTCACCAAGAACGTACGC
CGGCAGCCCAGCGCCATCCGTCAGATTCCGTTCCATCCTTCCCGTGTACGGTATGTCCGCGCGCGCGCGCGGATGCATCT
AAC---------GTGCCTGTGTGCGTGTGTG----CAGATGAAGTCCATGTCGCTCAAGATGAAGGCGGGCGGCGGCGGG
GGCAACGCGCGGGCGAGGCGACGGCGGCGGAAAGGGGCGGAAGGGGAGGAGGACCTGGAGCCGCAGGACAAGGACGTGGC
CGCGGCGTCGGCGTCCGCCAAGATAGCGCCGGAGGAGCGAGAGGGGAAGACGCGTGCGCCATGCGACCGGTGCCGCTCCG
GCCTGGAAGACGTCCCCGAGGAGGGGGAAGAGGAGGAGGAGGCGGCGGCGGCGGACCATACGACCGGGGAGGAGCAGAGC
GATGGCGAGTGGGTGGCGGAGCCGGAGCCCGGGGTGCTGATGACGCTGGTGTCGCGCCCCGACGGCACCAACCACCTCCG
CAAGCTGAGGTTCCGGGAGGAGCTGTTCGACGGGCCCCGGGCGGCGCAGCGCTGGTGGGCGGACAACTACGACAGCATCG
TCGAGCTCTACAGCATCGTGCAGTCCACCGGAGCGTCGCACGAGGAGGAGGACGCCGAGGACGGCATCGACGACGACGAG
CCCGCGACGCCGTGCCAGTCGGAGGACGACCACCACCAACCGCGGCGGTGGCCGCGGCTGGGGTGCGACTCGGCCTCCAC
CTCGGCCGGCCCGTCCAGCGGAAGCGGAAGCGGCAGCGGCAGCGGCGGTGGGTCGGCCAGCACCGTGGGCTCGCCAATAC
TGGGCCTCGTCGTCGCCACGCCTCCTAACAA------------GGGCGAGAGAAGCCCGGGCCAAGCACAATCACACAAA
CACAAGTGTCGTTCCTTGCACATAAATTAGACAGAAATGGTTATTATTTTTAGGGTTTTCTCCAGTCTTTCGTGCCCATC
A-TCTTACAGAAGCAGGCCTGGGCACGGGTTTTACAGCTTTTGTTTATACTGATTCACTGGTTCTC--------------
---------------------------------------------------------ATTTGTATTCGATACTTCCTGCA
AGGCTGTAAACAACGGCCA-GCATTTTCCTGCA--AGGGGTGGCTTGGGCAGTTGGAGCAGTAAAAATCGGCTATGGCCT
ATGGATGGAACATTGG----TATGATGACAAATGTTTAATTCTGGGAGGATGTCTTATTTGGGCACTGCTGCCTGGCTAC
AAAGTTCTG-----------------------------------------------------------------------
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--------------------------TTGTTAATGAACAGAATTGCTCCATTGCCCAGGCCTGAGATGCTGTGCATTCAA
AGCTTCAGTTTCCTTGAACTGTTGATGATCGCCCCATGGATCAATGCTTTCACCTTTGTGAGATTGCTCGTAGTGTCTCT
CTGTCTGACGAGAGAGTATGTTATGCATGGATATATGATCCATCTCGTATTC----------------------------
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-----------------------------------------------TAGTTTGTAATCGGTGAAATCCT-------TTT
ATGTCATTGTGAGTAATCGAGGATTATTCCTGCTT---ATACCCATTCTGCTTGGAATATTACTATTCCTAAAGTGTACA
TGTGTTTTCTACTCCCTCCGTTCCAAATTACTCGTCGTGGTTTTAGTTCAAATTTGAACTAAAACCACGACGAGTAATTT
GGAACGGAGGAAGTAGGTTTTTAG-TAACAACAAAATACTGACTAGAGATAACACCTTGCTAAACGCCGAACTGTGGATG
GCTCATCAAGTCATCATGTGTGTATTTTGTGCTGAAAATGAAAGTGTCATCACTTATTCTTTGCTTGGACGTTTGCTAAA
AGAA-CATTTTGAAGCTCGTCTCTGACGTACTTTTGCTTGACATGGGTAATTTACTTTGACCCTGTTCCTCGCTGGAAAA
CAAAATGCCTG---------------------------------------------------------------------
----------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
-------------------------------S---------------------------------S--------------
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-------S----------S-------------------------------------------------------------
-----S---------------SS------------------------------------S-------------------S
---------------------------S----------------------------------------------------
-----------------------------S--------------------------------------------------
---------------------------------------------S----------------------------------
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-----------------------S-------SSSS---------------------------------------------
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S-------------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
-----------------------------------------------------S--------------------------
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---------------------------------------------S----------------------------------
S--S-----------------------------------------------------------------------S----
-----------------------------------S-------------S-S----------------------------
------------------------------------------S-----------S-------------------------
-S---S-----------S----S---------------------------------------------------------
----------------------S-------------------------------S---S------SSSSSS---------
--------------S--------------SSSSSS---------------------------S------------S----
-------------SS--------------S--------------------------------------------------
----------------SSSS----SS-S----------------------------------------------------
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--------------------------------------------S--------------S---S----------------
-----------------------------------------------S-----------------------S--------
---------------------------------------S----------------------------------------
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--------------------------------------------------------S------------SSSSSSSS---
------------------S----------------------------------------------S--S--------S--
S-------------------------------------------------------------------------------
------------------------------------------------------------------S-S-----------
----------------------------------------------S---------S-----------------------
-----------------------------------------------SSS---S----S---------------------
---------------------S---------S----------------S-S--------S-------S------------
----------SSSSSSSSSSSSSSSSSS
>forward_275
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---------------AGCAACAACATCGAGCGAGA---------------------------------------------
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>reverse_2255
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--------------AGCCAGGCATTTTCCACAGA----------------------------------------------
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