>input_sequence_64370
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-----------------------------------------------------------------ATGGAGAGGCGCGGG
GACAAGGGGGCGTCGGCGGCGGCGGCGGCGCGGGCGAGGCGCCACGCCGACCAGCCGTCCTTCTCGTCGTCGCTGCTGGA
CGCGATATACAGGTCCATGGAGGACGAGCCGGGCCACCCCGCTGGGGACGCGGTGACTGCGGCGGCTACCAAGAAGAAGC
AGCAGCAGG---AGCAGGAGGAGGCCCTGCACTACAGCTACTACTACAGGCCGTCGCTGGCCGGGAGCTACCGGGCGCGC
GCGCCGGCGCCCGGGCCGCACGCCACCACGTCCAGCTCCTCCGAGTGCTCCAGCTACGGCGGCTTCTCCTCGTCCGAGGC
CGAGTCGTCCAGCCACCGCCGCCTGCGCCCCATCCGCACCGCCGTGCCCGGCGGGCCGCCCGCGCCCGCGCCGGAGAAGA
AGGCCAAGAAGCAGCCGGCGGGGGCCTCCATCCGCGCCAAGCTCAGGGACCTCCGCAAGCCGGCCTCCCCCGGCGCGCGC
CTCGCGGGCTTCCTCAACACCATCTTCGCCGGCAAGCGCGCCGCGCCGCAGACGCCGCCCTCGGCCCGCACGGCGGCGGC
GGCGGAGTACGCCTGCTCCTCGGCGTCGTCCTACTCGCGGTCCTGCCTGAGCAAGACGCCGTCCACGCGCGGGCACGCCA
ACCGCACCGTGCGGTTCGTGGACAGCGACCGCGAGGCGCCGGCGACGGTGCCCGGGGCGGACCGCCGGAGGGTGCCGGTG
GAGCAGATGCTGCTCCGGCGCATGGAGATGGAGAGCGACGAGGAGGACGACGAGGACGAGAGCAGCGACGCCAGCTCGGA
CCTGTTCGAGCTCGAGAACTTGGCCGCCGCCGCCGTGCCGCCGGGCGCAGGGTATCGGGACGAGCTGCCGGTGTACGAGA
CGACCAGGGTGGTGCTGAACCCCGGCATTGGCCACGCGTG---CGGGCACGGCCGGAGCGCCAGAGTCGCCTGA------
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>chr4A_1_TraesCS4A01G012100
TTTTTTAATACTATGGTGAGTATCATATAGTACTATCATGCATATGATACTAGTGTATGATATTACCTGCTAATGCATAG
TATTATATATTAGTATCATGTAGTACTCTATTTATTATCATGCATCACACAAAGTACCATAGCATTTATTATGATACGGT
ATTATAATATGATACTCCATCATCTTTTTTTCCATTTAATGTTATGAGAGCTTCCGATGTTATGACACCTCATTAAAATT
GCCTAGTTGGCATGCATGATACTAATTATGATACTACCATTACGATCAGCCTTTAATGTTTTCAGTCGGCGACACAGAGC
GCGCGTAGCTAGGGTGGTTAGATGCGGCGCGCACCGTTCGCCACGCGCATGCCGTTTTAATACTACGTCCGTGGAGAAGA
GAGATGTGCACGAGGTAATGCGTTCATTAGCAGCAAAAATTACAGTAAGCAGTAAGCAGAGCATGTTGCTAGAGTCGACC
ATGGGTTGAATAGAAGAGAAGCCGGGACGTGCCAAAAGGTGACATAGTAGCGGAGTGAGCGACAGATAGATAGATAGAGT
GTGAGCGAGGAGGGTGGAGTGGGCTACTTCAAAAAAAAGAGAGGGTGGAGTGGGCCCGCCGCACGCCCAGAACCAACTCA
-----AGCTGGAGT-AGTGG---CCTCCTCTGCCCGTTGCCACGTCACCCCCA-TCTCCCCTTCTTCCTCCCG-------
-----GGCCGCCTATATCTTCCCACCGATCCCTTCCCCCCTCACCCTTCTTTCCTCCAGCCTTTCCACACCATCTCCTCC
TTT---CCGCCACCACCCTTCGCCTCACGAGCTCGCTTCCGGTGAGGAACCGTCTCGCCGTGCACGGGGTTCCTCTGCCT
CGCGCCACTTTCCGCCCTAGACCAGCGCATTGTTGGGCTGGGAGCTCCTGCTTTTGAGCTTTGGTGGTGTCGCTGTGTCC
GTGTGTTGGAGCTTTGGTGGTGTCGCTGTGTCCGTGTGTTGGAGCGCCTGCGCGTTGCTGGTGGAATGGAGAGGCGCGGG
GACAAGGGGGCGTCGGCGGCGGCGGCGGCGCGGGCGAGGCGCCACGCCGACCAGCCGTCCTTCTCGTCGTCGCTGCTGGA
CGCGATATACAGGTCCATGGAGGACGAGCCGGGCCACCCCGCTGGGGACGCGGTGACTGCGGCGGCTACCAAGAAGAAGC
AGCAGCAGG---AGCAGGAGGAGGCCCTGCACTACAGCTACTACTACAGGCCGTCGCTGGCCGGGAGCTACCGGGCGCGC
GCGCCGGCGCCCGGGCCGCACGCCACCACGTCCAGCTCCTCCGAGTGCTCCAGCTACGGCGGCTTCTCCTCGTCCGAGGC
CGAGTCGTCCAGCCACCGCCGCCTGCGCCCCATCCGCACCGCCGTGCCCGGCGGGCCGCCCGCGCCCGCGCCGGAGAAGA
AGGCCAAGAAGCAGCCGGCGGGGGCCTCCATCCGCGCCAAGCTCAGGGACCTCCGCAAGCCGGCCTCCCCCGGCGCGCGC
CTCGCGGGCTTCCTCAACACCATCTTCGCCGGCAAGCGCGCCGCGCCGCAGACGCCGCCCTCGGCCCGCACGGCGGCGGC
GGCGGAGTACGCCTGCTCCTCGGCGTCGTCCTACTCGCGGTCCTGCCTGAGCAAGACGCCGTCCACGCGCGGGCACGCCA
ACCGCACCGTGCGGTTCGTGGACAGCGACCGCGAGGCGCCGGCGACGGTGCCCGGGGCGGACCGCCGGAGGGTGCCGGTG
GAGCAGATGCTGCTCCGGCGCATGGAGATGGAGAGCGACGAGGAGGACGACGAGGACGAGAGCAGCGACGCCAGCTCGGA
CCTGTTCGAGCTCGAGAACTTGGCCGCCGCCGCCGTGCCGCCGGGCGCAGGGTATCGGGACGAGCTGCCGGTGTACGAGA
CGACCAGGGTGGTGCTGAACCCCGGCATTGGCCACGCGTG---CGGGCACGGCCGGAGCGCCAGAGTCGCCTGATGTTTG
CT---CGACGGGATCGCGCGCGGGGCCGGTGGGCGACTGTAAAACGGCGGGGGTTACTGTAAAATGCAAAATTAGTTAGC
TACTCTAGATGGGAGGTTTGAGTAGGCGTTTTATTACGTGCTCTCTCTTTTAACCTTTGGTGTTGTCTCTGAGATTTTCT
TCGTTTCGGGGGTGTGGAGTGTACTCAGTCAGTCAGATGTACTGTAATTTCTAGCCGCAGGAAATCAATCAGTAAAATGT
TGTTCCTAGTGTTCATCCTTGGTGAAAATTGCCATGTCTGCCAACCTCACGTGAACTAAAGTTGCCGTAAAAAAAACATT
CGGATTGTCATCCTTAAAATCCGAACGTTCAGGAATTTAGTATTTTTGATCAAGAACAACCGGCGGGAAACTTGACGGCG
CA------------------------------------------CCCATCTCATCGGCGGCGAGCGCGCCGCCGTGTGCA
TTGTACAAGTGCGGAGTGGTACAAGTTGCTC---GGCCAGGGTGACATGAAGAGGACGCAACAGCATGTAAAGAGAGACG
AGGGGGTACAAGAGAAATGAGGACGGGGGTTGAAAGCCGGGAGG---------CGGTGGTGGGCGGAGACGGCGACGGCG
ACGGCGAGCGATGGATTTGACGGGGATGCACACGCTTTGTCTGCTGCCGGCCCGCTAACATGCGAGCTCCTTCTAATCAT
TACCGGCATCATATCCCTGCGGAATCATTCCTCTTCCTTTCC---------------CTCCCTCCAGCGCGCGAGGCC-G
CCACCACACACGTCAGCTCCAGCACACTCCAGTTACTCTACTT-------------------CAGTAATCCCAGATGATG
ATGAGTCAGATCGATCGGTCCAAGCATGACACGTCTGCTTGGCCGGTCACGCACTCCTACTAATTCGGGGGCGCGGATCA
GCGAATCCGGGAAACAGGGCCGCAATCCTGGCCCGTCGTACGGTCTGAATCTTGCTAATTATGGCCGGCCAGGCCCGTCG
TCCGTGGATTGTTGCAGAAGCAAGAAACTTCGGCGTGTTGTATGTG
>chr4D_619
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----------------------------------------------------------CCGCACGCCCGAAACCAACTGA
-----GTCTGAACCCAGTGGCCTCCTCCACTGCCCGTTGCCACGTCACCCCCCGTCGCCCCTTCTTCCTTCCTCCCCCGC
CAGCCGGCCGCCTATATCTTCCCACCGATCCCTCACCCCCTCACCCTTCTTTCCTCCAACCTTTC---------TCCTCC
TTTTCACCACCGCCACCCTTCGCCCCACGAGCTCAGTTTCGGA---GAACCATCTCACTGTACACGGAGTTCCTCTGCCT
CGCGCCACTTTCCGCTGTAGAACAGAGCATTGTCC---------------------------------------------
------------------------------------------------------------GTGGAATGGAGAGGCGCGGG
GACAAGGGGAT------------GGCGGCGCGGGCGAGGCGCCACGCCGACCAGCCGTCCTTTTCGTCGTCGCTGCTCGA
CGCGATATACAGGTCCATGGAGGACGAGCCGGGCCACGCCGCCGGGGAC---------GCGGCGGCGACCAAGAAGAAGC
AGCA------GCAGCAGGAGGAGGCCCTGCACTACAGCTACTACTACAGGCCGTCGCTGGCCGGGAGCTACCGTGCGCGC
GCGCCGGCCCCGGGGCCGCACGCCACCACGTCCAGCTCCTCCGAGTGCTCCAGCTACGGCGGCTTCTCCTCGTCGGAGGC
CGAGTCGTCCAACCACCGCCGCCTGCGCCCCATCCGCACCGCCGTGCCCGGCGAGCAGCCCGCGCCCGCGCCGGAGAAGA
AGGCCAAGAAGCAGCCGGCGGGGGCCTCCATCCGCGCCAAGCTCAGGGACCTCCGCAAGCCGGCCTCCCCCGGCGCGCGC
CTCGCCGGCTTCCTCAACACCATCTTCGCCGGCAAGCG---CGCGCCGCAGACGCCGCCCTCGGCCCGCACGGCGGCGG-
-----AGTACGCGTGCTCGTCCGCGTCGTCCTACTCGCGGTCGTGCCTGAGCAAGACGCCGTCGACGCGCGGGCACGCCA
ACCGCACCGTGCGGTTCGTGGACAGCGACCGCGAGGCGCCGGCGACGGTGCCCGGGGCGGACCGGCGGAGGGTGCCGGTG
GAGCAGATGCTGCTCCGGCGCATGGAGATGGAGAGCGACGAGGAGGACGACGAGGACGAGAGCAGCGACGCCAGCTCCGA
CCTGTTCGAGCTCGAGAACTTCGCCGCCGCCGCCGTGCCGCCGGGCGCGGGGTACCGGGACGAGCTGCCGGTGTACGAGA
CGACGAGGGTGGTGCTGAACCGCGGCATTGGGCACGCGCA---CGGGCACGGCCGGAGCGCCAGAGTTGTCTGACGTCGC
TCGGACGATCGGATCGCGCGCGC----------------------------GGTGACTGTAAAATGCAAATTAGTTAGCG
------AGATGGGAGGTGGAGTAA-GCGTTTTATTACGTGCTCTCTCTTTTAACCGTTGGTGTTCTCTCTGAGATTTTCT
TTGTTTTTGGGGTGTGGAGTGTACTCAGATCAGA--------TGTAATTTCTAGCCGCAGGAGATGAATCAGTAAAATGT
TGTTCCTAGTGTCATTTCTCCTTTGCCCTCTGCTTTTGAACTACTACTTCAGAAAGTCTTGAATTCCTCGCGAAGTCTTG
AATGCACTGACACCGGTCCGGTTGGAAGCAAATGTTTTGGACGAACCAAATCGGAGGTAGTAGTACTTAAAATTAGTCGA
ATACATATTTGGCACGGATGAGTTGGATATTGACGACGTACGGTCCCATGTCATCGGCGGCAAGCGCACCACCGTGTGTA
TTCTACTACTGAGTGCGGGTACGATCTGCTAGGAGGCTAGCGTGACATGAACAGGACGCAACAGCATGTAAAGACGAGGG
AGTACAAG-AAGAGAAATGAGGAGGGGATTGAAAGGCCGGAGGCGGACGGCGACGGTGGTGGGCGAAGACGGCGACGGT-
-----GAGCGATGGATTTGACGGGGATGCACACGCTTTGTCTGCT----GCCCGCTAACATGCGAGCTCCTCCTAATCAT
TACCGGCATCATATCCCTACGGAATCATTCCTCTTCCGTTTTTTCTTCTTTCTCTCACTCTCTCCGGCGCGCGAGGCCGG
CCGCCACAGGCGTCAGCTCCAGCACACTAGCGAGTGTACTACTACTACTACTAGTACACTAGCAGTAATCCCA---GATG
ATGAGTCAGATCGATCGGTCCAAGCATGACACGTCTGCTTCGCCGGTCACGCACTCCTACTAATTTGGGGGCGCGGATCA
GCGAATCCGGGAAACAGGGCCGCAATCCTGGCTCGCCGTACGGTCTAAATCTTGCTAATTATGGCCGGGCCGGCCA-TCG
TCCATGGATTGTTGCAGAAGCAAGAAACTTAGGTGTGTTGT-----
>chr4B_619
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----------------------------------------------------------CCGCACGCCCAAAACCGACTGA
AGCGAAGCTGGAGT-AGTGGCCTCCTCCACTCCCCGTTGCCACGTCTCCCC----------TTCTTCCTCCCG-------
-----GGCCGCCTATATCTTCCCACCGATCCCTTACCCCCTCACCCTTCTTTCCTCCAACCTTTCCATACCATCTCCTTC
TTT------CCACCACCCTTCGCCTCACGAGCTCACTTCCGGTGAGGAACCGTCTCACCGTGCACGGGCTTCCTCTGCCT
CGCGCCACTTTCTGCACTAGAACAGCGCATTGTTG----------------------------GTGTGGTTGCTGTGTCC
GTGT-------------------------------------------------GTTGCTGCTGGAATGGAGAGGCGCGGG
GACAAGGGGAT------------GGCGGCGCGGGCGAGGCGCCACGTCGACCAGCCGTCCTTCTCGTCGTCGCTGCTCGA
CGCGATATACAGGTCCATGGAGGACGAACCGGGCCACGCCGCCGGGGAC---------GCGGCGGCGACCAAGAAGAAGC
AGCAGCAGCAGCAGCAGGAGGAGGCCCTGCACTACAGCTACTACTACAGGCCGTCGCTGGCCGGGAGCTACCGTGCGCGC
GCGCCGGCCCCGGGGCCGCACGCCACCACGTCCAGCTCCTCCGAGTGCTCCAGCTACGGCGGCTTCTCCTCGTCCGAGGC
CGAGTCGTCCAACCACCGCCGCCTGCGCCCCATCCGCACCACCGTGCCCGACGGCCAGCCCGCGCCCGCGCCGGAGAAGA
AGGCCAAGAAGCAGCCGGCGGGGGCCTCCATCCGCGCCAAGCTCAGGGACCTCCGCAAGCCGGCCTCCCCCGGCGCCCGC
CTCGCGGGCTTCCTCAACACCATCTTCGCCGGCAAGCG---CGCCCCGCAGACGCCGCCCTCGGCCCGGACGGCGGCGG-
-----AGTACGCGTGCTCCTCGGCGTCGTCGTACTCGCGGTCATGCCTGAGCAAGACGCCGTCGACGCGCGGGCACGCCA
ACCGCACCGTGCGGTTCGTGGACAGCGACCGCGAGGCGCCGGCGACGGTGCCCGGGGCTGACCGCCGGAGGGTGCCGGTG
GAGCAGATGCTGCTCCGGCGCATGGAGATGGAGAGCGACGAGGAGGACGACGAG---GAGAGCAGCGACGCCAGCTCCGA
CCTGTTCGAGCTGGAGAACTTCGCCGCGGCCGCCGTGCCGCCGGGCGCGGGGTACAGGGACGAGCTGCCGGTGTACGAGA
CGACGAGGGTGGTGCTGAACCGCGGCATTGGGCACGCGCAGCACGGGCACGGCCGGAGCGCCAGAGTCGTCTGACGTCGC
TCGGACGATCGGACCGCGCGCGC----------------------------GGTGACTGTAAAATGCAAATTAGTTAGCG
------AGATGGGAGGTGGAGTAA-GCGTTTTATTACGTGCTCTCTCTTTTAACCTTTGGTGTTCTCTCTGAGATTTTCT
TTGGTTTTGGGGCGTGGAGTGTACTCAGATG-------GTACTGTAATTTCTAGCCGCAGGAGATCAATCAGTAAAATGT
TGTTCCTAGTGCCATTTCTCCTTTGCCCTCTGCTTTTCTACTAGTACTA-AGAAAGTCTTGAATTCCTCGTGAAGTCTTG
AATGCACTGACACCGGTCCGGTTGGAAGCAAATTTCTTGGACGAAACAAATCGGGGTACTTACTACTTAAAATTAGTCGA
ATACATATT-GGCACGGATGAGTTGGATATTGACGACGTACGTTCCCATTTCATCGGCGGCAAGCGCACCACCGTGCGTA
TTCTACTACTAAGTGCGGGTACGATCTGCTAGGAGGCCAGCGTGAGATGGACAGGACGCAACAGCATGTAAAGACGAGGG
AGTACAAG-AGG---AATGAGGAGGGGATTGAAAGTTGGGAGGCGGACGGTGAGGGTGGTGGGCGAAGACGGCGACGGT-
-----GAGCGATGGATTTGACGGGGATGCACACGCTTTGTCTGCT----GCCCGCTAACATGCGAGCTCCTCCTAATCAT
TACCGGCATCATATCCCTACGGAATCATTCCTCTTCCTTTCT---TTCTTTCTCTCACTCTCTCCGGCGCGCGAGGCCGG
CCGCCACAGACGTCAGCTCCAGCACACCAGTGGCGAGT----------TACTAGTACACTAGCAGTGATCCCA---GATG
ATGAGTCAGATTGATCGGTCTAAGCATGACACGTCTGCTTCGCCGGTCACGCACTCCTACTAATTTGGGG----------
GCGAATCCGGGAAACAGGGCCTCAATCCTGGCTCGCCGTACGGTCTAAATCTTGCTAATTATGGCCGG-----CCA-TCG
TCCATGGATTGTTGCTGAAGCAAGAAACTTAGGTGTGTTG------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S--------S-
----------------------------S-----------------------S---S-----------------------
----------------------------------S-----------------------S--------S------------
--------S-------------------------S---------------------S-----------------------
---------------S-----S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS---SS--S---------
----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------
---------SSSSSSSSSSSSSS------------------------------------------------------S--
-------------------------------------S----S------SSSSSSSSS--------S-------------
--------S----------------------------------------------------------------S------
--------S--S--------------------------------------------------------------------
-----------S--------------------------------------------S-----------------------
--------------------------------------------------------------------------------
--------------------------------------SSS--------------------------------------S
SSSSS-------S-----------------------------S--------------------S----------------
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-----------------------------------------------------------------------------S--
---------------------S--------------------------S-----S-------------------------
----S----------------S---------S------SS-----------------------------S----S--SSS
SS------SS------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S---------------S-SSS-SSSS
SSSSSS-----------SSSSSS-S---------------------------------------S---------------
-S----SS--------------------SSSSSSSSSS------------------------S-----------------
------------SSS-S--SSS-SSSSS-SSS-S-S---S-S-SSSSS--SSS--S-SSS-SSSS-S-SSSS--SS-S-S
SSSSSSS-S-SS-SSSSSSSSSSSSSSSSS-SSSS---S-SSSSSSSS-SSSS--SS--SSS-SSSSS--SS-S-SSSSS
SS-----------------------------------------------S-----------S-----S--S-------S-
--S---S-S--S-SSSS-----S-SS----S---------S----------S----------------------SSSSS-
--SSSSSSS--------------S---SS-SS--S-----SS-S---------------------S------------SS
SSSSS----------------------------------------SSSS----------------------S--------
------------------S----------------------S------------------S----S--------------
--S-----S-------------------SSS-SSSS-SSSSS-------------------------------SSS----
----------------------------------------S------------------------S--------------
--------------------------------S--S----------S---------------------S-S----SS---
---S--------------------------S--S-------SSSSS
>forward_979
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-------------------------------------------------------------------------------C
GTGTGTTGGAGCTTTGGTG-------------------------------------------------------------
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>reverse_2521
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----------------------------------------GGTGACATGAAGAGGACGCA--------------------
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