>input_sequence_64335
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------------------------------------CACTGCCCAGCCCAGCAGCCGCTGCTTCACTA----------GC
CAGTGTCTTCTCTTTTGGCAACTCAACTCGCTTGAGCGAAATGGCCCTGGCTGGTAGGCTGCTCGTCCTCCTCGCCGTCG
CTCTTCTCGCCGTGTCCATCATCGCCGAGCACAAGGTGAGATCTCTGCTGATC--C---------GCGGTACCCAGGACG
ACGGA----GAAGCCAAACTGTTGGTCTTGCTTGGGATGCTTATTACATCGCATATTTTGTGATCAGGTGTTTGCCTCAG
GAACCGAAGAGCATGAGGATAATGTGTACCGAGTGAGCAAGGTATATGTTTCCACG--GCA-TCTGTTGCACATTTTTAA
AGATA-TTTTGGGGATAGATCTGTTACTGATCGTGTGTGTTCTC-------CTCCTTTCCGAATTCTTTCTTCAGGGAGG
ACAGGGCAGTCTCAAGATATACCGTGAGTTACCCTTCCCTGCTCATATCTG-----------------------------
--------------------------------AATCTGAATCTGCTGGTTTCGCCTGAAATGAAATGAAATGAAATGTAA
TGTGAGTTGGACTGGTTGTTGATCCTGCGGTGCATGGATTGCAGAGTGCAAGCCGGCGTGCGAGTACCGGTGCAGCGACA
CCAAGTACAGGAAGCCGTGCCTCTTCTTCTGCAACAAGTGCTGCAACACGTGCCTGTGCGTGCCGTCGGGCCTCTACGGC
CACAAGTACGAGTGCGGCTGCTACAACGACTGGAAGACCAAGGAGGGACGCCCCAAGTGCCCCTAGTTACAAGATTTGGT
CTTCTGACGGCCCGCCGTTGATGCCGTTGCTCGATCAGCCTAGCCGGTA-------GTTACATG---TAACAGGTGTAAG
--------------------AAGAACTCGATCGAGATCTGGGTTGTCTGTA----GTATGTCGCGTGCGTCCGCCTCTTC
TCTGCGACTCCAGAGGGCGGCGCACGCGGTTGTATCGTGGGATTCGCCGCTCGGTTCACGACCTGGAACACGC---GTAA
ATCACAGTTTGTTGC-----------------------------------------------------------------
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>chr5A_1_TraesCS5A01G227000
GGACCTGATTGTAATTTTTATTACCTGCGTTCTCTGTACTACACCATGATAAACGATGAATAGATTAAAAGTTCCTTCGC
AAAAAAAAGCACCACACCGGTTAAAATAATAAGGACAGTAATATTAGCTAGCATCAAGTCATAAATAAGAGAGCAAGCTG
GTGAGACGGGCCGGAATGATGTGTACGCACGCGCGAGCGAACTGATCTCGACCGAACTACCTCCGATGCAACACACACTA
GTAGTATTATTACACAACCGCTTGAAATGAGTGGTTAGCCATCTCAAAAACAATCAACAGTGTAGTATTATTACCCACAA
ACGCCCTTCGGTGGGAGTAATCATCACCCTCTGAGTGGCAAGCATGCCTGCGTCTTGCAAATTCTACCACCAGAGCTCGG
TTCACTCGCGACTTTTGCTAGCGTTTCCGGGCAGGCTCCCCACGTCAAGACGCACATGCGCGCGCGCCAAGCTGTGTAGT
GTAACGTGCGCGCACTCATGCGCGCAGCTAGGCGACGCCCCAAAGCACCGGCATTTCAGCGCCGCCCTCAGTAATCCGTA
TGGGGCTCTAGGCCTAATTAGCTAGAATATGATTCTGCGCCGATCTGAGGCGCGAAAATCATACAGTAGAAAATTTTGGG
GTCAGAGAACGCCCGGATCTGTG---------------------------------------------------------
----TGTTGCACAGCTAGTGGTAACACCTAGTCTAGTCTTATA-------------------------------------
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-------------------------------CTGTGATCAGATTAGTAATCCACCATGCAAGTGGGGA------------
----AGAGAGAGAGAGAGAGAAGACTAAGCAAGATCGAATCTGTCCGGCCTCATGTGCAGCAAAAAAGGTTTAATG----
-GATGGGATGAACATGGCATGAGTATCTAGCTAGCATATGTCGATGCATTGCTTTTGACGCATGTT-----CTGCAATAC
TTGG-CTTTTCCATCCAGCTTTAGCTCGACCATTTTCACGGTATAAAATGGTGAAGACTTCTCGGAATCCACAGCTATGG
TCTATAAATACGTCCTCAGATCCATCTCACCCTGCCCACTGCCCAGCCCAGCAGCCGCTGCTTCACTA----------GC
CAGTGTCTTCTCTTTTGGCAACTCAACTCGCTTGAGCGAAATGGCCCTGGCTGGTAGGCTGCTCGTCCTCCTCGCCGTCG
CTCTTCTCGCCGTGTCCATCATCGCCGAGCACAAGGTGAGATCTCTGCTGATC--C---------GCGGTACCCAGGACG
ACGGA----GAAGCCAAACTGTTGGTCTTGCTTGGGATGCTTATTACATCGCATATTTTGTGATCAGGTGTTTGCCTCAG
GAACCGAAGAGCATGAGGATAATGTGTACCGAGTGAGCAAGGTATATGTTTCCACG--GCA-TCTGTTGCACATTTTTAA
AGATA-TTTTGGGGATAGATCTGTTACTGATCGTGTGTGTTCTC-------CTCCTTTCCGAATTCTTTCTTCAGGGAGG
ACAGGGCAGTCTCAAGATATACCGTGAGTTACCCTTCCCTGCTCATATCTG-----------------------------
--------------------------------AATCTGAATCTGCTGGTTTCGCCTGAAATGAAATGAAATGAAATGTAA
TGTGAGTTGGACTGGTTGTTGATCCTGCGGTGCATGGATTGCAGAGTGCAAGCCGGCGTGCGAGTACCGGTGCAGCGACA
CCAAGTACAGGAAGCCGTGCCTCTTCTTCTGCAACAAGTGCTGCAACACGTGCCTGTGCGTGCCGTCGGGCCTCTACGGC
CACAAGTACGAGTGCGGCTGCTACAACGACTGGAAGACCAAGGAGGGACGCCCCAAGTGCCCCTAGTTACAAGATTTGGT
CTTCTGACGGCCCGCCGTTGATGCCGTTGCTCGATCAGCCTAGCCGGTA-------GTTACATG---TAACAGGTGTAAG
--------------------AAGAACTCGATCGAGATCTGGGTTGTCTGTA----GTATGTCGCGTGCGTCCGCCTCTTC
TCTGCGACTCCAGAGGGCGGCGCACGCGGTTGTATCGTGGGATTCGCCGCTCGGTTCACGACCTGGAACACGC---GTAA
ATCACAGTTTGTTGCATGTTGGAGGAGGCACGCCGTCGCAGTTGTTGTAGCACCACA-----------------------
----CCAGAGTGGGGCGCC-------GGTCGTGTTGGTTGTTCTGCGCTCTGCACTCGAGATGACGCCGGTCCACCGAGC
CCCGGCATGAGAGGAAACCAGGGCAACTTGCCGGAACCCCCGCCTCGAAACGAGATGCGCCGGGGGGCACTGCCCTCGAA
GAGCGGCCTTTCTACG--AAAAAAAATGGTTAAGACCATCGGCCTATGCATCCAATGATGCGTACACCCATCTTTATCGA
TAAAGTCTGACA-AACAAAT--ACATAGATCAATCTAAATTTATCTTTCTGATACTCCCTCCGTTCCGAATTACTTGTCG
CAGAAATGGATGTATCTAGAACTAAAATACATCTAGATACATCCATACCCGCGACAAGTAATTCGGAACGGAGGGAGTAG
ATGTCTGGCGCTACACCTGCAGGTCTGTTGGTGTGACCTGACCTCGTACCAACACACCATCTAATCTCATGACCGCACCA
AGCCGTCTTACGGTGAGTCGAGAGCACCAACTGGTCTGACACATCCTTAGCGCGCACCGCATGCTCACGCTCTAGAATCC
GATGCTGACATCTTCCGTCGTCCTATCTTCAGGAAGGATCAACGCATTGACCTTACCAGACCCAACTGCAGTCGATGTCG
CCACGACGCCAAACAACGCCATCATCCTGCGTGTGTCTATCAACACGCATCCATCGCTGATACTCCACTACATCATTCCA
CCGAGACCCGTCATCGTTGATGTGGTAGACGCAACATCGCTCCACCTCTTGACCCCTCCAGCCAACATCTACTTTAAAAC
GATGCACCAGGAGGGAGGACGGCACTGAAGGCACTGCAATCCTCTGATCTGGGACACCCAGATCTAGGGTTTCCCCCTGG
AGTAGTCGGAGCTAGGTGACGATGATGCCTTTGACAAGGGAATGACGACTACAACATTGCCAATGTCCGCCATGACCCGA
AATTGGCACGGGCA
>chr5B_369
TGCTCTTA------------------------------------------------------------------------
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---------------------------------------------------------CAAATTCTACCACGAGAGCTCGT
CTCACTCGCGACTTTTGCTAGCGTTTCCGGGCAGGCTCCCCACGTGAAGGGGCACATGCGGGCGCGCCAAGCTGTGTAGT
GTAACGTGCACGCACTCATGCACGCAGCTAGGCGACGCCCCAAAGCACCGGCATTTCAGCGCCGCCCTCCGTAATCCGTA
TGGGGCTCTAGGCCTAATTAGCTAGAATATGATTCTGCGCCGATCTGAGGCGCGAAAATCAT-----AGAAAATTCTGGG
GTCAGAGAACGCCCGGATCTGTGCCCGGGACTGGACGGCAAATTCCGTCAATGCCAGAGCCGTCGGCATGCATCGCATTG
CGTGTGTTGCGCAGCTAGCACT-ATTCCTAGTCTAGCCTTATA-------------------------------------
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-------------------------------CTCTGATCAGATTAGTAATCCACCATGCAAGTGGG--------------
AGAGAGAGAGAGAGAGAGAGAAGATTAAGCAAGATCGAATCTGTCCGGCCTCATATGCAGCAAAAAAGGTTTAATACTGT
AGATGGGATGAACATGGCATGAGTAT----CTAGCATATGTCGATGCATTGCTTTTGACGCATGTTGGGCTCTGCAATAC
TTGG-CTTTTCCGTCCAGCTTTAGCTCG----TTTTCACGGTATAAAATGTTCAAAACTTCTT-GAATCAACACCTATTG
CCTATAAATACGTCCTCAGATCCATTTCACT-------CTGCCCAGCCCAGAAGCCGCTGCTTCACTACACTTCACTGGC
CAGCGTCTTCTCTTTTGGCAGCCCAGCACGCTTCAGCAAAATGGCCCTGGCTGGTAGGCTGCTCGTCCTCCTCGCCGTCG
CGCTTCTTGCCGTCTCCATCATCGCCGAACACAAGGTGAGATCTCTGGTGATC--CACCCGCCGGGCGGTATGCACGAC-
---GA----GAAGCCAAACTGTTCGTCTTGCTTGGGATGCTTA---CATGGCATATTTTGTGATCAGGTGTTTGCGTCAG
GGACTGAAGAGCATGAGGATAATGTGTACCGAGTGAGCAAGGTATATGCTTCCACG--GCTTTCTGTTGCACGTTTTAAA
AGAGA-TTTTGGGGATAGATCTGTTGCTGATCGTGTGTTTTTC------TTCTCCTTTCCGAATTCTTTCTTCAGGGAGG
ACAGGGCACTCTCAAGATATACCGTGAGTTGCTCTT-CCTGCTCATATGTG-----------------------------
--------------------------------AATCTGAATCTGCTGTTTTCGCCTGAG-----ATGAAACGAAATGTAA
TGTGAGTTGGACTAGTTGTTGATGTTGCGGCGCATGAACTGCAGAGTGCAAGCCGGCGTGCGAGTACCGGTGCAGCGACA
CCAAGTACAGGAAGCCGTGCCTCTTCTTCTGCAACAAGTGCTGCAACACCTGCCTGTGCGTGCCGTCGGGCTTCTACGGC
CACAAGGACGAGTGCGCCTGCTACAACGACTGGAAGACCAAGGAGGGACACCCCAAGTGCCCCTAGTTGCAG---GATTC
TGCCT-------CGCCGTTGAAGCCATTGCTCGATCAGCCAGGCCGGAGCCGGGCGGTTACATG---TAGCAGGTTTGCC
GCTTCCGGCGACGCCGGTGTAAGAACTCGATCGAGATCTGGGTTGT-TGTA----GTATGTCGCATGCGTCCGCCTCTTC
TCTG------------GCGGCGCACGCGGTTGTATCGTGGGT-----------------------------------TCA
AACACAGTTTGTTGCACGTT---GGAGGCACGCCGACGCAGTTGTTGTAGCACTACAATACACGTAGTAAATCGTGTAAT
CCTAAGAGAGTGGGGCGCC-------GGTCGTGTTGGTTGTTCTGCACTCTGCATTCGAGATGACGCCGGTCCACCGAGC
CCGGGCATGAGAGGAAACGAGGGCAACTTGCCGGAACCCCCGCCTTGAAACGAGATGCGCCGGTGGGCACTGCCCTCAAA
GAGCGACCTTTTC-AAGAAAGAAAAAAGGTCGAAACCCGCG---------TCCAAGAATGCACACAACCATCTTTATCAA
TAAAATCTGACAAAACAAAT--ACGTAGATCAACCTAAA-----------------------------------------
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>chr5D_378
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---------------------------------------------------------CAAATTCTACCTCGAGAGCTCGG
CTCAGTCGCGACTTTTGCTAGCGTTTCCGGGCAAGCTCCCCACGTGAAGGAGCACATGCGTTCACGCCAAGCCGTGTAGT
GTAACGTGCACCCACTCATGCACGCAGCTAGGCGACGCCCCAAAGCACCGGCATTTCAGCGCTGCCCTCCGTAATCCGGA
TGGGGCTCTAGGCCTAATTAGCTAGAATATGATTCTGCGCCGATCTGAGGCGCGAAAATAAT-----AGACAATTCTGGG
GTCAGAGAACGCCCAGATCTGTGCCCGGGACCGGACGTCAAATTCCGTCAATGCCAGAGCCGTC-GCATGCATCGCATTG
CGTGTGTTGCACAGCTAGCACT-ACTCCTAGTCTAGCCTTATACTACTCTGATCCTGTGTTTTAAATTTCGGCCGAGAAA
AACGGATTTCGGCCGAATTTCGGCCATCTCGGCCTGGGGCGAAATCTATCCTTGGCCGAAATTGGTCAAATTTGACAAAT
TTTGATCAAAATTGAGTCAAATTTCAGTCAAATTCTGGTCAAATTTTGGCCGAAATTCAGCCATCTCGGCCTAGGGCAAA
AAAAATTCTCAAACCCAAAATCAAAACACAGCTCTGATCAGATTAGTAATCCACCATGCAAGTGGGGAAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAAGATTAAGCAAGATCGAATCTGTCCGGCCTCATATGCAGCAAAAAAGGTTTAATA----
-GATGGGATGAACATGCCATGAGTATCTAGCTAGCATATGTCGATGCATTGCTTTTGACGCATGTTGGGCTCTGCAATAC
CTCGCCTTTTCCATCCAGCTTTAGCTCGACCATTTTCACGGTATAAAATGT---------------------ACCTATTG
CCTATAAATACGTCCTCAGATCCATCTCACT-------CTGCCCAGCCCACAAGCCGCTGCTTCACTACACACCACCACT
TC---TCTTCTCTTTTGGCAACCCAGCTCGCTTCAGCAAAATGGCCCTGGCTGGAAGGCTGCTCGTCCTCCTCGCCGTCG
CGCTTCTCGCCGTCTC---CATCGCGGAGCACAAGGTGAGATCTCTGGTTGTGGTCATCCGGCGGGCAGTACCCACAAG-
---GTGAGGGAAGCCAGATTGCTCGGCTTGCTTGGGATGCTTA---CATTGCATATTCTGTGATCAGGTGTTTGCCTCAG
GAGCCGCAGAGCACGAGGATAATGTGTACCGAGTGAGCAAGGTCCTTATTTCCTCCTCGCCTTGCGATGCACATTTTTAA
AGAGATTTTTGCGGGTAGATCTGTTGCTGATACGTATTTTTTTTTTCTTTTCTCCTTTCTGAGTTGTTTCTTCAGGGAGG
ACAGGGCAGCCTCCAGCAATACCGTGAGTCGTCGTCACCCTTTCTATTTCTACAAAAATCTTGAGAGTGCATGAAACCGA
GCGCATGTCATGTAGAGTACTCCACTATATAAAAGCTGAATCTGCTGGTTTCGCCTGAA-----ATGAAAATGTGATG--
-------------GGTTGTTGATGTTGCGGTGCATGAACTGCAGAGTGCAAGCCGGCGTGCGAGTACCGGTGCAGCGACA
CCAAGTACAGGAAGCCGTGCCTCTTCTTCTGCAACAAGTGCTGCGACACCTGCCTGTGCGTGCCGTCGGGCTTCTACGGC
CACAAGGACGAGTGCGCCTGCTACAACGACTGGAAGACCAAGGAGGGGCGCCCCAAGTGCCCCTAGTTGCAAGAAGATTC
TGCCT-------CGCCGTTGAAGCCATTGCTCGATCGGCCAGGCCGGAGCCGGGCGGTTACATGGAGTAGCAGGTTGGCC
GCTTCTGGCGACGCCGGTGTAAGAACTCGATCGAGTTCTGGGTTGT-TGTAGTACGTATGTCGCATGCGTCCGCCTCTTC
TCTGCGGTTCCAGAGGGCGGCGCACGCGGTTGTATCGTGGGATTCGCCACTCGATTCACGGCCTGGAACACGGTTAGTAA
ATCACAGTTTGTTGCATGTTGGAGGAGGCACGCCGACGCAGGTGTTGTAGCACCACAACGCGCGTAGTATATCGTGTACT
CCTACCTGAGTGGGGCGCCGGTCGATGGTCGTGTTGGTTGTTCTGCGCTCTGCACTCGAGATGACGCCGGTCCACCGAGC
CCGGGCATGAG-GGAAACGAGGGCAACTTGCCGGAACCCCCGCCTCGAAACGAGATGCGCCGGTGGGCACTGCCCTCAAA
GAGCGACCTTTTCAAGAAAAGAAAAATGTTTGAAACCCTCGCCTCTGCATT-CAAGGACGCACACATCCATCTTTATCAA
TAAGGTCTGACAAGGCAAATACATATCGATTAACCTAAAGTCATCTTTCT------------------------------
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>SNPs
S-SS--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S---------
S--------------------------------------------S---SS---------S-------------------
---------S-----------S-----------------------------------------------S----------
--------------------------------------------------------------SSSSS--------S----
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------------------SSS-S--S----------S-------------------------------------------
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---------------------------------S----------------------------------------------
------------------------S-----------------------------S--------------------S----
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--------------------------------------------------S-S--S------SS-----S---S----S-
S-----------------------------SSSSSSSS-------------S----------------------------
---S------------------S--S-------S---S------------------------------------------
-S-----------S---------------------------------S---------------------------S---S
SSS--------------------S-------------------SSS---S------------------------------
------------------------------------------------------------S-------------------
---S---------------------S------------S--S-S------------------------------------
------------------------------S-----S-----------S-------------------------------
-----------------------------------------------------------SSSSS------S---------
-----------------------SS-----------S-S-----------------------------------------
-------------------------------------------------S---------------------S--------
------S---------S---------------------------------------------------S-----SSSSSS
SSS--SSSSSSS---------S---S--------------SS-----SS--------------------S-----S-SSS
----------------------------------------------S-----------------S---------------
------SS----------------------------------------S----S------S-----------S-------
-----------------------------------S--------------------------------------------
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--S---------------S--------------------------------------------S-------------S--
-----S-----SS-S-----S----------S-S---S---S-SSSSSSS-----S-----SS---S-----------S-
---------------------------------S-----S-S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS
>forward_228
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------------------------------------------------CGACCGAACTACCTCCGATG------------
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>reverse_2638
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-----------------------------------------------------------------------------GAA
GAGCGGCCTTTCTACGA---------------------------------------------------------------
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