>input_sequence_64331
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------ATGCACCAGCTTTCCCTGGCCGCGCGGCCGCCGGCGCCGCAGTCTCAGTGTTCTCGGAGTAGGACGGCGTGCCG
CTGTAGCCTGAAGCAGGCGCCTGCCTCTCTCGCCGTGGCCGCAAGACGGTGCGCTGCCGCGCCGCTCTTGGCCGCGTCGC
TCCTCCTCGCCGCCGCCGCCGCGTCTCCTGGCATTCCTGCCGGTACTCCACCAGGTTTGCCTAGCCTGCCGCTTGTCAGT
AGAGATGCTTGTTCTAGACTTCGATCCATTGCATGCACTGTGCACACCAGGTGTGGCAAAATATACGTTGAATTTTGCTT
GTCGATCGACCACATGGCATTCATCCGTTTCCTTTA------------------TTTTTGCGCAGCGTTTGCCCAATCCC
AAGGCGCGGCGCTGTTCCGGAAAGCGTGCATCGGGTGCCACGACACGGGAGGGAACATCCTACAGCCGGTGAGTTTGCTG
AAATCCCTTGCACGGTCGAAACGACTGTAAATTCCAGGTTCAGATCATCCCTTTGTTCTGAGCTTGCTGCTTGATCATGT
CCAGGGCGCCACCCTCTCCATGAAGGATCTTGAGAGGTATGGCCGTATGGCAGAGCCATTTGTTAAACTACAGCTTGCAT
TCAATTTCTTATTCGGTCTATATTGACTGTGGCAAAGA-GAAAATTTTGAATTTGCTTCAGGAACGGAGTTGCCACGGAG
GAAGAGATATACAACATCACTTACTACGGGAAGGGAAGGATGCCGGTACGTAAAATTTGCACCCATTATGTACGTCGTTG
ACAGGAGTAAACGTTTTGCAACTATGAATGAGCCTCGTCGTGTGTGTAGGGTTATGGAGAGCAATGCACGCCGAGAGGGC
AGTGTACCTTCGGCCCCCGGCTGCCTGAAGAGGATATCAAGATGCTTGCAGCATTTGTCAAATCGCAAGCAGAGAACGGG
TGGCCAAAGATCGACGGTGATGTCGAGTGA--------------------------------------------------
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>chr2D_1_TraesCS2D01G213400
CTTTAACAATTAAATCACGTAGCC-GCCGCCTCCTTTCCCACGCTTAGGGTTTTTCCGCCTCCCGCCGGCGCTAGCGCCG
GTCCGCCTTGTCTCCGGTGG-CCTTACGGCCATAAAGACTTGGTGGATAGCGATCCTTGCCGGTGGGAGGGCTTAGTTTT
T-AGATGTTGCTTTGAGTTTTGTTAGGATTTGTGTCCTATTTAGGAAGGCGAGACCGCGGGGGCTCCCTGAAGATGGAAT
AAGGTTCTCCCCGCCTAACCCC-GTTCTTGTGGTGCGTCTAGCACCGTCAGTGTGCGTGTGGAGATGTGTCTC---GGCG
GATCCATCTTTGGTCGAGCTGCTTGG-TCTATTCGTCGTTTGTCTACGCTCATGTGTCTTCAGGCTGGATCCTTCTGATC
TAC---TCTACTCTTCATCTGCAACGATTGTTACTCTGGTGCGCTGGTCCTATGTGGCCTTATCACGACGACTTCCCGAC
TGTCTATTAGAACAAGTTTTGCCCGGCTCCGACGAGGAAGGGGTGATGACGATG--GCACGC--CTTTGGCTCGCTTCAG
TTTTTGTAGTCGTCGCTAGGTGGTCTATGAATCTAGATGTAAT-TTTTGTTATTTGTAGTGTTCCTTGTACTGCCAAGAT
-------GAATAGATTGAAAGTTTTTTTTG-AAAAAAACCAACA---AAAAATAAGTTATATACCATTAAAATAATATCA
TTGGAAATATCTTTGAACTATGAATCCAACACTATAACTTTTGTGACAAACAAGGTATATATTTATATTTTGTTAGGGCA
CGAAATACAAATGGACCAGTCAACCGGACGA----AGTACGTTGCAAACGGTCTGGCCCAGTCGGACCCG----------
-GGCCTCGCTATTGGACGCTACGAGCGTCCAATACGACCTCCCCCAACCCGATCCTTCCACCCG---CTACTACTACGTG
TCGTCTCCTTGAACAA-GTTCTTTATCTTACCTCGAGCGAGGCAACCGGCAGCAGCCTCCGCTGCCAGAGTGCCGGTGGG
CGCGCGATGCACCAGCTTTCCCTGGCCGCGCGGCCGCCGGCGCCGCAGTCTCAGTGTTCTCGGAGTAGGACGGCGTGCCG
CTGTAGCCTGAAGCAGGCGCCTGCCTCTCTCGCCGTGGCCGCAAGACGGTGCGCTGCCGCGCCGCTCTTGGCCGCGTCGC
TCCTCCTCGCCGCCGCCGCCGCGTCTCCTGGCATTCCTGCCGGTACTCCACCAGGTTTGCCTAGCCTGCCGCTTGTCAGT
AGAGATGCTTGTTCTAGACTTCGATCCATTGCATGCACTGTGCACACCAGGTGTGGCAAAATATACGTTGAATTTTGCTT
GTCGATCGACCACATGGCATTCATCCGTTTCCTTTA------------------TTTTTGCGCAGCGTTTGCCCAATCCC
AAGGCGCGGCGCTGTTCCGGAAAGCGTGCATCGGGTGCCACGACACGGGAGGGAACATCCTACAGCCGGTGAGTTTGCTG
AAATCCCTTGCACGGTCGAAACGACTGTAAATTCCAGGTTCAGATCATCCCTTTGTTCTGAGCTTGCTGCTTGATCATGT
CCAGGGCGCCACCCTCTCCATGAAGGATCTTGAGAGGTATGGCCGTATGGCAGAGCCATTTGTTAAACTACAGCTTGCAT
TCAATTTCTTATTCGGTCTATATTGACTGTGGCAAAGA-GAAAATTTTGAATTTGCTTCAGGAACGGAGTTGCCACGGAG
GAAGAGATATACAACATCACTTACTACGGGAAGGGAAGGATGCCGGTACGTAAAATTTGCACCCATTATGTACGTCGTTG
ACAGGAGTAAACGTTTTGCAACTATGAATGAGCCTCGTCGTGTGTGTAGGGTTATGGAGAGCAATGCACGCCGAGAGGGC
AGTGTACCTTCGGCCCCCGGCTGCCTGAAGAGGATATCAAGATGCTTGCAGCATTTGTCAAATCGCAAGCAGAGAACGGG
TGGCCAAAGATCGACGGTGATGTCGAGTGATCCGATTAGGGTTGAACACGAGGTGCTGGCTCCATTTCGCGAGGAGGCTG
AAACCATAACTGTTGATGAGGTTAAATTTTTTTTTTTTGACTC-GCAAACTGTAGAACAATTGTTCTAAGTAATTTTA--
TATTAATAAAATGAAAATAGTTATTCACGTAATCGAAGATTACATGCCAAAAAATAGAAGGCCTACATAAGAGATGCTGG
CTAGTTTTGTGAGCTGGCTTGCTTTAATCTACTTAGCTTTGTGAATAACAGTTCTGATATTATTCCGAGAGAAAAAGAAA
AAAAAAACAGTTCTGAGATTATCTTTCAGATTGATGTGCCATCCTTGGATATGTGGAGGGGCACTTTTGAAGATCTTGTC
ATTGCGCTGAATTCAAATATTCCAACAACCCATAATGATGCTTTCAAGGAAAATTGTTTCCCTCACGACATCAACGAGA-
GGTGGCAATGATGACCTATTGAATTATGGTCTCTCCGGTCTCTCCTTACATCGACAACGTTTGAAATGGACTGACAAAGG
ACCTTTGAGAGTTTGTGTTGCTAGATCTATTGGCTTTCCTTGGAGCTTGGTAGTCCGTGTATCTATCAAGGAGAGCAATT
GTCTGGCTATTGGTGTGGTGACTTCGACATCTTCTTCAATGTTGTTATGCAACATGGTCCACCTTCTCCAACTCTCTGGA
CCGGTGGTAATGGATTGCAAGTCTGTCCTGCATGGGCTGATGCTCCAACCAACGTTTCTTTAGCGATGTGA---TCTCAT
TCCAAACAGTGAGTGATTATTGCGGTTTAATAAAGCCTGGTATGGCGAGAGCGTTTGCAGGTGTCCTTTTACTTTATTG-
TTGGTTCAGTGCAATTTTCAAGCTTCAACGGACAACGTACAATCTGAGGAAGAAGAATGCTGGTATGATTTTCAATGT-A
ATTTTTTTACTGGTCGTTCTGTGTCCACTTTGACGGTGCATAGTCCCAAAGGTGGCCCGTTAATCGAGAAGCCAGTCAA
>chr2A_1
CTTTAACCATTAAATCACGTAGCC-GTCACCTCCTTTCCCACACT--TGAGGTTTTT-CTCGCGT--CCCGCCGATGCCG
GTTCGCCTCGTCTCCGGTGGGCCTTACGTCCATAGAGGCGTGGTGGATACCGATCCTTGCCGGTGTGAGGGTTCAGTTTT
T-AGATGTTACTTTGAGTTTTGTTAGGGTTTGTGTCCTATTCAAGAAGACGAGACTGCGGATGCTTCCTGAAGATGGAAT
AAGGTTCTCTCTGGTTAGCCTC-GTTCCCGTGGTGCATCTAGCACCGTCGGTGTGCGTGTGCAGATGTGTCTCC--GGCG
GATCTATCTTTGGTGGAGCTGCTCGGATCTGTTCGTCGTTCGTCTACGTTCATGTTTCTTCAGGTTGAATCCTTTTGATT
TAC---GCTACTCTTTATCTGCGATAGTTGCTGTTCTGGTGCGCTGATTCTATGGGGCCTTATCACGATGACTTCCCGAC
TGTCTATTAC-ACAAGTTTTAGCCGGCTCCGACAAGGGAAGGGCGATGACGACGACG--CGT--CTTTGGCTCGCTTCAG
TTCTTCTAGTCGTCGCAGGGTGGTCTATAAATCTGGATGTAAT-TTTTGTTATTTCTTGTGTTCATTGTACTGTCAATGT
-------CAAGA----------------TG-AGAAAAACTAACTAACAAAAATAAGTTATATACCAGTAGAATATTATCA
TTGGAAGTCTCTTTTGACTATGAATCCAACACTATAACTTTTGTGACATACAAAGTATATTTTCATATTTTGTTAGGGCA
CGAAATACAAATGGACCAGTCAACCGGACGGAGGTAATACGTTGCAAACGGTCTGGCCCAGTCGGACCCTTGTGCGTGCG
TGGCCTCGCTATTGGACGCAACGAGCGTCCAATAGAATCT-CCCCAACCCAATCCTTGCACCTG---CTACTACTACGTG
TCTTCTCCTTGAACCACGTTCTTTATCTTACCTCGAGCGAGGCAACCGGCAGCAGCCTCCGATGCCA-AGGGCCAGTGGG
CGCGCGATGCACCAGCTTCCCCTGGCCGCGCGGCCGCCGGCGCCGCGGTCTCACTGTTCTCGGAGTAGGTCGGCGTGCCG
CTGCAGCCTGAAGCAGGCGCCTGCCTCTCTCGCCGTGGCCGCAAGACGGTGCGCGGCCGCGCCGCTCTTGGCCGCGTCGC
TCCTCCTCGCCGCCG---CCGCGACTCCTGGCATTCCTGCCGGTACTCCACCAGGTTTGCCTAGCCTGCCGCTTGTCAGT
AGAGATGCTTGTTCTAGACTTCGATCCATTGCATGCACTGTCCACACCAGGTGTGGCAAAATATACGGTGAATTTTGCTT
GTCGATCGACCACATGGCA-------------TTTA------------------TTTTTGCGCAGCGTTTGCCCAATCCC
AAGGCGCGGCGCTGTTCCGGAAGGCGTGCATCGGGTGCCACGACACGGGTGGGAACATCCTACAGCCGGTGAGTTTGCTG
AAATCCCTTGCACGGTCGTAACGACTGTAAATTCCAGGTTCAGATCATCGTCTGT--------TTGCTCCTTGATCATGT
CCAGGGAGCCACCCTCTCCATGAAGGATCTTGAGAGGTATGGC--------AGAGCCATTTGTTAAACTACAGCTTGCAT
GAAATTTCTTGTTCGGTCTATATTGACTGGCAAAGAG----AAATTTTGAATTTGCTTCAGGAATGGAGTTGCCACGGAG
GAAGAGATATACAACATTACTTATTACGGGAAGGGAAGGATGCCGGTACGTAAAATTTGCACCCATTATGTACGTCGTTG
ACAGGAGTAAACGTTTTGCAACTATGAATGAGCTTCATCGTGTGTGTAGGGTTATGGAGAGCAATGCACGCCGAGAGGGC
GGTGTACCTTCGGCCCCCGGCTGCCTGAAGACGATATCAAGATGCTTGCAGCATTTGTCAAATCGCAAGCAGAGAACGGG
TGGCCAAAGATCGACGGTGATGTCGAGTGATCCGATTACGGCTGAACACGAGGAGCTAGCTCCATTTCGCGAGGAGGCTG
AAACCATAACTGTTTATGAGGTTAATATTTTTTTTGACTCGCAAGCAAACCGTAGAACAATTGTTCTAAATAATTTTAC-
-ATTAATAAAATGAAAATAGTTATTCACGCAGACGAAGATTA--------------------------------------
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>chr2B_12
-----------AAATCACGTAGCC-GCCGCCTCCTTTTCCACGCTAATGTTTTTTCACCTCCCAT--GGCACTGACGCCG
GTCCGCCTCATCTCCAATGG-CCTTACGGCCATAGAGGCGTAGTGGATACTGATCCTTGCCGGTGGGAGG-CTCGGTTTT
T-AGATGTTACTTTGAGTTTTTTTAGGGTTTGTATACTATTCAGGAAGGCGAGACTGCGGGGGCTCCCTGAAGACGGAAT
AAGGTTCTCCTCGCCTAGCCCC-GTTCCCGTGGTGCGTCTAGCATCGTCAGTGTGCATGTGGGGATGTGTCTCC--AGCG
GATCTATCTTCGATGGAGCTGCTCGGATCTGTTCGTCATTCGTCTATGTTCATGTGTCTTCAGGTTGGATCCTTCTGATC
TAC---GCTACTTTTCATCTACGACGGTTGTTGTTCTGGTGCGCTGGCCCTATAAGGCCTTATCACAATGACTTCCCGAC
TATCTATTACAACAAGTTTTGCCCGGCTCCGACAAGGGAGGGGCGATGACGACG--G--CGC--CTTTGACTCGCTTCAG
TTTTTGTAATCGTCGCTAAGTGGTCTATGAATCTGAATGTAAT-TTTTGTTATTTCTAGTGTTCGTTGTACTGCCAAGAT
-------GAATAGATCGAAAGTTTTATGAAAAAAAAAACTAACA---AAAAATAAGTTATATACCATTAAAATAGTATCA
TTGGAAATCTCTTTCAACTATGAATCCAACACTATAATTTTTGTGACATACAAAGTATATTTTTATATTTTGTTAGGGCA
CGAAATACAAATGGACCAGTCAGCCGAACGGTGGTAGTACGTTGCAAACGGTCTGGCCCAGTAGGACCCCTGTGCGTGCG
TGGCCTCGCTATTGGACGCTACGAGCG-CCAATAGGACCTCCCCCAACCCGATCCTTCCACCCGCTACTACTACTACGTG
TCGTCTCCTTGAACCACGTTCTTTATCTTACCTCGAGCGAGGCAACCGGCAGCAGCCTCCGCTGCCAGAGTGCCGGTGGG
CTCTCGATGCACCAGCTTCCTCTGGCTGCGCGGCCGGCGGCGCCGCGGTCTCACTGTTCTTGGAGTAGGACGGCGTGCCG
CTGTAGCTTGAAGCAGGCACCTGCCTCTCTCGCCGTGGCCGCAAGACGGTGCGCGGCCGCGCCGCTCTTGGCCGCGTCGC
TCCTCCTCGCCGCCG---CGGCGTCTCCTGGCATTCCTGCCAGTACTCCACCAGGTTTGCCTAGCCTGCCGCTTGACAGT
AGAGATGCTTGT-----------------------------GCACACCAGGTGTGGCCAAATATACGGTGAATTTTGCTT
GTCGATCGACCACATGGCA-------------TTCATCTATTTTTTTTCCTTTCTTTTTGCACAGCGTTTGCCCAATCCC
AAGGCGCGGCGCTGTTCCGGAAGGCGTGCGTCGGGTGCCACGACACGGGAGGGAACATCCTACAGCCGGTGAGTTTGCTG
AAAGCCCTTGCACGGTCGAAACGACTGTAAATTCCAGGTTCAGATCATCCCTTTGTTCTGAGCTTGCTGCTTGATCATGT
CCAGGGCGCCACCCTCTCCATGAAGGATCTTGAGAGGTATGGC--------AGAGCCATTTGTTAAACTACAGCTTGCAG
TCAATTTCTTGTTCGGTCTATGTTGACTGTGGCAAAGAGGAAAAATTTGAATTTGCTTCAGGAACGGAGTTGCCACGGAG
GAAGAGATATACAACATCACTTACTACGGGAAGGGAAGGATGCCGGTACGTAAAATTTGCACCCATTATGTACGTCGTTG
ACAGGAGTAAACGTTTTGCAACTATGAATGGGCTTCATCGTGTGTGTAGGGTTATGGAGAGCAATGCACGCCGAGAGGGC
AGTGTACCTTCGGCCCCCGGCTGCCTGAAGAGGATATCAAGATGCTTGCAGCATTTGTCAAATCGCAAGCAGAGAACGGG
TGGCCAAAGATCGACGGTGATGTCGAGTGATCCGATTACGGTTGAACACGAGGTGCTGGCTCCATTTCGTGAGGAGGCTC
AAACCATAATTTTTTATGAGGTTATATTTTTTTGATC-----C-GCAAACCGTAAAACAATTGTTCTAAGTAAGTTTATA
TATTAATAAAATGAAAATAGGTATTCACGTAAACGAAGATTACATGCCAGAAAATAGAAGGCCGCG-TAAGAGATTCTAG
CTAGTTT-GTGA--------------------------------------------------------------------
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-----------------------ATAAGGTCTCTCC---------TTATGTCGATAATGTCCGATCTGGCCCGATAAAGG
ACCTTTGAGAATTTGTGTCGCTAGATCTGTTGGCTCTCTTTGGATCTTGGTAGTCGGTGTATCTATCAAGGTGAGCAATT
GTCTGGCTATTGGTGTGGTGACTTTGACATCTTCTTCAATGTTGTTATGCAACATGGTCCACTTTCTCTAACTCTCTGGA
CCGATGGTGATGAATTGCAAGTCTGTCTTGCGTGGGCTAATGCTCCAACCGATGTTTCTTTAGCGATGCCTAGGTCTCAT
TTCAAGCGGTGAGTGACTATTGCGGTTTAATAAAGCCTGGTATGGCAAGGGCGTTTGCAGGTGTCCCTTGACTTTATTG-
TTGGTTCAGTGCAATTTTCAAGCTTCCACGGACAGCGTACAATCCGAGAAAGAAAAATGTTAGTAGGATTTTTTGTGTAA
--TTTTTTACTGGTCGTTCTGTATCCACTTTGACGGTGCATAGTACCAAGGGTGCCCGGTTAATCG-------------
>chr7D_15
--------------TCACGTAGCCA--CGCCTCCTCTCCCAAGTTTAGGTTTTCTCCGCCTCCCGCCGGCGTCGTCGCCG
GTCCGCCTCGTCTCCGGTGG-TCTTAGGGCCATGAAGGCATGGTGGATCCCGGCGTTTGCCTGTGGGATGGCTCCATTTT
T-AGATGTTGCTTTGTGCTTTGTTAGGGTTTGTGTCCTGCTCAGGAAGGCGAGAAAGCGGCGGCTCCCTGAAGATGGAAT
AAGGTTCTCCCGGCCTAGCCCC-ATTCCGATGGTGAGTCTAGCACCGTCGGTGGGCTTGTGGAGATGTGTCTCC--GATG
GATCTATCTTTGGTGGATCTGCTCGGATATGTTCGTCGTTCGTCTACGTTCATGTGTCTTAAGGTTGA-TTCTTCGGACC
TAC---GGTACTCTTCATCGGTGATGGTTGTTGTTCTGGCGCGCTGGTCCTATGAGGCCTTAGCACGATGACTTCCCGAT
ATTCTACTACAACAAGTTTTGCCCAGCTCCGACGAGGGAGAGGCGATGACAGCG--G--CGCGTCTTCGGCTCGCTTCGG
TTCTAGTAGTCGTCGATAGGTGGTCTATGAATCTAGATGTAATATTTTTTTATTTTTTATGATCGTTGTACTGCCATGAT
TGAAGATGAATAGATCGAAAGTTTTTTTTT-AAA----------------------------------------------
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>chrUn_17
----------------ACGTAGCCTGCCGCCGCCTCCCCAAAACT--AGGGTTCTTTGCCTCCCACCAGCGCCGACGCCG
GTCTGTCCCGTCTCCGGTGG-CCTTAGGACCATGGAGGCGGAGTGGATTTCGGCCCTTGCCGGTGGGAGGGCTCCGTTTT
C-ATACCTTTTTTCGAGTTTTGTTAGGGTTTGTGTCCTGCTCAGGAAGGTGAAACGGCAGCGGCTCCCTGAAGATGGAAT
AAAGGTCTCCCCGTCTAGTCCCCGTTCCGGTGATGCGTGTAGCATCATCGGTGGGCATGTGGAGGTGTGTCTAC--GGCG
GATCTGTCTTTTGTGGATTTGCTCGGATCTGTTCGTCGTTCGTCTTCGTTCATGTGTCTTCAGGTTGGATTCTTTTGATC
TAC---ACT---CTTCATCCGCGGTGGTTGCTGTTCTGGTGCGTTGGTTCTATGGGTCCTTAGCACGACGACTTCCCGAC
TGTCTACTACAACAAGGTTTGCCCGGCTCCGGTGAGGGAGGGGCGATGACAGCG--G--CGCGCCTTCGGCTCGCTTCAG
TGTTTGTAGTCGTCGCTAGGTGGTCTATGAATCTGCATGTAAT-TTTAATTATTTCTAGTGTTCGTTGTACCACCATGAT
TGAAGATGAATAGATTGAAAGTTTTT------------------------------------------------------
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>chr2B_22
---------------------GCG-GCCGCCTCCTCCCCA---TTTAGGGTTTCTCTGCGTCCCACCGGCGCCGGCGCTG
ATCCGCCTCGTCTCCGGTGG-CCTTAGGGTCATGGGAGCGTAGCGGATCCCGGCCCTTGCCGGTGGGAGGGCTCCGTTTT
T-AGATATGTCTTTGAGATCTGTTAAGGTTTGTGTCCAACTTAGGAAGGCGAGACGGCGGCGGCTTCCTGAAGATGGAAT
AAGGTTCTCCCCGCCTAGTCCCTGTTTCGGTGGTACGTTCAGCGTCATCGGTAGGCGTGTGGATGTGTGTCTCC--AACG
GATCTGTCCTTGGTGGATTTGCTCGGATCTGTTCGTCGTTCGTCTAGGTTCATGTGTTTTCAGGTTGGATCCTTCCTATC
TACGCTACT---CTTCATCGGCAGCGGTTGCTGTTCCGGTGCGTTGGTCCTATGGGGCCTTAGCACGACGACTTTTCGAC
TGTCTACTACAACAAGTTTTGACCAGCTCCGATGAGAGAGGGGCGATGCTGGCG--G--CGTGCCTTCGGCTCGCTTCAT
TGCTTGTAGTCGTCGCTAGGTGGTCTACGGATCTAGATGTAAT-TTTTATTATTTCTGGTGTTCGTTGTACTGCCATGAT
TGAA----------------------------------------------------------------------------
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>chr7D_25
-------------------------GCCGCCTCCTCCCCA---TCTAGGGTTCCTCTGCCTCCCACCGGTGCCGTCGTCG
GTCCGCCTCGTCTCCGGTGG-CCTTAGGGTCATGGTAGCGCGGTGGACCCCGACCCTTGCC-GTGGGAGGGCTCCGTTTT
T-AGACGTGTCTTCGAGATTTGTTAGGGTTTGTGTCCAACTCAGGAAGTCGAGAAGGCGGCGGCTCCCTGAAGATGGAAT
AAGGTTCTCCCCGCCTAGCCCTCGTTCCGATGGTGCGTTTAGCATCGTCGGTGGACGTGCGGATGTGTGTCTCC--GGTG
GATCTGTCCTTCGTGGATTCGCTCGGATCCGTTCGTCGTTCATCTACGTTCGTGTGTTTTCAGGATGGATCCTTCCGATC
TACGCTACT---CTTCATCGGCGACGGTTGCTGTTCTGGTGCGCTGGTCCTATGGGGCCTTAGCACGACGACTTCCCGAC
TGTCTACTACAACAAGTTTTGCCCAACTCCGGCGAGGGAGGGGCGATGACGGCG--G--CGCGCCTTCGGCTCGCTTCAG
TGCTTGTAGTCGTCGCTAGGTGCTCTACGGATCTGGATGTTAT-TTATATTATTTCTGGTGTTCGTTGTACTGCCATGAT
TAAAGATGAA----------------------------------------------------------------------
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-------------------------------------------------------------------------------
>chr3A_44
--------------------------------------------TTAGGATTCCTCCGCCTCCCGCCGGCGCCGCCGCCC
GTTAGCCTCGTCTCCGGTGG-CCTTAGGGCCATGGAGGCATGGTGGATCCCGGCCCTTGCCGGTGGGAGGGCTTCATTTT
TAAGATGTGTTTTCGAGTTTTGTTAGGGTTTGTGTCCTGCTCAGGAAGGCGAGACGGCAACGGCTCCCTGAAGATGGAAT
AAGGTTCTCCCCGTCTAGCCCCCGTTCCGGTGGTGCATCTA--ATCTTCGGTGGGTGTGTGGAGATGTGTGTCTTTGGTG
GATCTGTCTTTGGTGGATTTGCTCGGATCTGTTCATCGTTCGTTTACGTTCATGTGTTTTCAGGTTGGATCCTTTCGATC
TACGCCACT---CTTCATCGGCAATGGTTGCTATTCTGGTGCGCTGGTCCTATGGGGTCTTAGCACGACGACGTCCTGAC
TGTCTACTACAACAAGTTTTGTCTGGCTCTGGTGATAGAGGGGCGATGACGGCG--G--CACGCCTTCGGCTCGCTTCAG
TGCTTGTAGTCGTTGCTAGGTGGTCTATGAATCTGGATGTAAT-TTTTATTATTTCTAGTGTTCGTTGTACTGCCA----
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-------------------------------------------------------------------------------
>chr4D_44
--------------------------------------------TTAAGGTTCCTCTGCCTCCCGCCGGCGCCGCCGGCG
GTCCGCCTCGTCTCCGGTGG-CCTTAGGGTCATGGCGGCGTGGTGGATCTCGGCCCTTATCGGCGGGAGGGCTCTGTTTT
T-AGTTGTTTCTTCGCGTTTTGTTAGGATTTGTGTCATGCTTAGGAAGACGAGATGGTGGCGGCTCCCTGAAGATGGAAT
AAGGTTCTCCCCGCCTAGCCCCTGTCTCGATGTAGTGTCTAGCATCATCAGTGAGCGTGTGGAGATGTGTCTCT--GGCA
GATCTGTCCTTGGTGGATTTGCTCGAATCTGGTCGTAGTTCGTCTACGTTCATGTGTTTTCAGGTTGGATCATTCCGATC
TACGCTACT---CTTCATCGGCGCCGATTGATGTTCTATTGCGCTGGTCCTATGGGGCCTTAGCACGACGACTTCCTGAC
TGTCTACTACGATAAGTTTTGTCCGGCTCCGGCGAGGGAGGGGCAATGACAGCG--A--CGCGCCTTCGGCTCGCTTAAG
TTCTTGTAGTCGTCGCTAGTTGGTCTACAAATCTGGATGTAAT-TTTTATTATTTCTGGTGTTTGTTGTACTGCCATGAT
TGAAGATGAATAGATTAAAAGTTTTCTCGC-AAAAAAA------------------------------------------
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-------------------------------------------------------------------------------
>chr5D_44
--------------------------------------------TTAGGGTTTCTCTACCTCCCGTCGGCGCCGCCATCG
GACCGCCTCGTTTCCGGTGG-CTTTAGGGTCATGGCGGCATGGTGGATCCTGGCCCTTGCCGGCAGGAGGGCTCTATTTT
T-AGACGTTTCTTCGAATTTTGTTAGGGTTTATATACTGCTCAGGAAGACGAGACGGCGGCGGCTCCCTGAAGATGGAAT
AAGGTTCTCCCCGCCTAGCCCCCGTACCGTTGGTGTATCTAGCATCGTCGGTGGGCGTGCGGAGATGTGTCTCC--GGCG
TATCTGTCCTTGCTGGATTTGCTCGGATCTGGTCGCAGTTCGTCTACGTTTGTGTTTCTTCGGGTTGGATTCTTTCGATC
TACGCTACT---CTTCATCGGCGGCGGTTGCTGTTCTGCTGCGCTGGTCCTATGGGGCCTTAGCACGACGACCTCCCGAC
TGTCTACTACAACAAGTTTTGCCCGGCTCCGGCGAAGGAGGGGCGATGACGGCG--G--CGCGCCTTCGGCTCGCTTCAA
TGTTTGTAGTCGTCGCTAGGTGGTCTATGGATCTAGATGTAAT-TTTTATTATTTCTAGTGTTCATTGTATTGCCATGAT
TGAAGATGAATAGATTGAAAATTTTCTTGC-AAAAA--------------------------------------------
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-------------------------------------------------------------------------------
>chr6D_45
---------------------------------------------TAGGGTTCCTCTGCCTCCCGCCGGCACCGCCACCG
GTCCGCCTCGTCTTCGGTGG-CCTTAGGGCCATGGCGACGCGGTGGATCTCGGCCCTTGCCAGCGGGAGGGCTTTGTTTT
C-AGATGTTTCTTCAAATTTTGTTAGGGCTCATGTCCTGCTTAGGAAGACGAGACGACGACGGCTCCCTGAAGATGGAAT
AAGGTTCTCCCCGCCTCGCC-CCGTCCTGGTGGTGTGTCCAGCATCGTCGGTAGGCGTGTGGAGATGTGTCTTC--GGTG
GATCTGTCTATGGTAGATTTGCTAAGATCTGGTCGTAGTTCATCTACGTTCTTGTGTCTTCAGGTTGGATCCTTCAGATC
TATGCTACT---CTTCATCGGCCGCGGTTGCTATTCTGCTACGCTGGTCCTATGGGGCCTTAGCACGACGACTTCCCGAT
TGTCTACTATAACAAGTTT-GCCCGGCTCTGACGAGGGAGGGGCGATGACGGCG--G--CCCGCCTTCGGCTCGCTTCAG
TGCTTGTAGTCTTCGCTAGGTAGTGTACAGATCCGAATGTACT-TTTTATTATTTATGGTGTTCCTAATACTGCCATGAT
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>chr2A_2132
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---------------------------------------TTACATGCCAGAAAATAGAAGGCCTACGCAAGAGATTCTAG
CTAGTTT-GTGAGCTGGGTTGCTTTAGTCTACTTAGCTTTGTGAATAACAGTTCTGAGATTATTCCAAG-----------
AAAAAAACAGTTCCGAGATTATCTTTGAGATTGTTGTGCCATCCTTGGATATGTGGAGGATCATTTTTGAAGATCTTGTC
ATTGCGCTGAATCCAAATATTCCAACAACCCATAATGATGATTTTAATGAAAAATGTTTCCCTCGCGGCATCGACGAGGT
GGTGGCAATGATGACCTATTGGAATAAGGTCTCTCC---------TTATGCTGACAACATCCGATCTGGCCCAACAAAGG
ACCTTTGAGAGTTTGTGTCGCTAGATCTATTGGCCTTCTTTGAATCTTGGTAGTCAGAGTATCTATCAAGGAGAGCAATT
ATCTGGCTATTGGTGTGGTGACTTCGACATTTTCTTCGATGTTGTTATGCGACATGGTCCACTTTCTCTAACTCTCTGGA
CCGGTGGTGATGGATTGCAAGTTTGTCCTACGTGGGCTGATGCTCCAATCATTATTTCTTTAGCAATGTGA---TCTCAT
TCCAAGCGGCGAGTGACTATTGCAGTTTAATAAAGCCTGGTATGGCGAGAGCGTTTCCAGGTGTCCCTTTACTTTATTGT
TTGGTTCAGTGCAATTTTCAAGCTTCCACGGACAACGTACAATTTGAGGAAGAAGAATCTTAGTATGATTTTCAATGT-A
--TTTTTTACTGGTCGTTATGTGTCCACTTTGATAGTGCATAGTACCAATGGTGTCCCGTTAACCGGGAAGCCAGTC--
>SNPs
-------S-----------------------------------------------------------------S------
--------S------------------------------S---------S------------------------------
-------------------------------------------------------S------------------------
-----------------S----------S---------------------------------------------------
----S---------S--------S------S---------S-------S---------------S---------------
------S--------------------------S--------------------S-------------------------
---------S---------------------------S-----S--------S----SS---------------------
-------------------------------------------------------S------------------------
---------------------------------------S----------------------------------S-----
--------S-----S---------------------------------S----S------S-------------------
------------------------------S--------------------------------------S----------
----------------------------------S---------------------------------------------
--------------S-----------------------------------------------------------------
------------------S---------------------------S------S--------------------------
------------------------------------------------------S-------------------------
---------------SSS--------------------------------------------------------------
-------------------------------------------------------------------S------------
-------------------SSSSSSSSSSSSS------------------------------------------------
----------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------SSSSSSSS-----------------------------
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------S--S-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------S-----------------------------------------
--------------S---------------------SSSSSS--------S-----------------------------
--------------------------------S----------------S----------------S--------S--S-
-------S---------S--------S------------------------------S--------S--SSSSSSSSSSS
-------------S------------S------S-------------------------SS--S----------------
------------S---------------------------S---S--S-----S----------S--S----S-----S-
---------------------S-S--S---------SSSSSSSSS---SS----------SS--SS---S-S--------
------------------S-------------------S-----S----------S------------------------
--------------------------------------------------------------S-----S-----------
--------S----------------------S--------------------S---------------------------
-----S-S--------S-------------------------------------------------S-------------
--------------------------S--------------------------------S-S------------------
SS------------------------------------------S----S----S-----------S----------SS
>forward_385
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------ACGCTCATGTGTCTTCAGGC---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------
>reverse_1874
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------CTCGTCGTGTGTGTAGGGTT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------
>forward_1388
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------ACCACATGGCATTCATCCGT----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------
>reverse_2465
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------ACGACATCAACGAGAG
GTGG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------
