>input_sequence_64329
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------------------------------------------------------------ATCCAGAACACAACACCCGC
CTCGAAGCTT-ATCACTGCTGCTAGCCTTGCTTCTGCTTGCAGTTTCTCATACACATGGAGAAGATAACATCGCCACAAT
CTTCTTGCATCAGCCAGCCGGCTG---CGGTGGCGTCCATGTCGGCCGGCGAGAGCAGCTGGGCGATGCACTTTGCAAAC
TTCGTGGCATCAACAGACAACAGACAGGAGATGTATCACCAAGGAGGAGAAGCCTCTGACAGTGATTTCTCCTCTGGCTT
CTCTTCCTCATTTGATTCCTTGGGTGACGGCTCCGACACCGACTCCTTCCTCACGTCGGACCTCATGGATGAAGACGATG
AGGATGATTCTCTGCAGGACACTGCCTGTTCTTCCGCCGCTCGCCCTAAGGTTAGTAAAGGAAGAAAA-TTAACTTTCTC
TAGTTAGTCATAGATAGCTTGATGAACAGCAGTACATATTTAGCCTTTCTTCTAGGTTCTAACATGATTATGATTTTTGT
TGTACAGGTAACCGGCATGCATGATATGTTCATGAAGTCAATTCTAACCATGGATGCGAAGGACATGAACACCACCCAGC
TGGTATGTTCGAGAAGCAATCGCTATCATCTCTTTCTAGCTTCCTTCGGACGTTGTTTAGATG-TATAGTATAAGCTTTT
TCTTACAATTGTGTGTTCCTGAAACATTGCAGGCCAAGTATTTCCTCGACGCACGTTCAAGGCAGCAGGCGACTGGTGCG
GTTCAAGAAGTGATCAGCGGTGGAAATAGCAACGAGAAGCAGCTGCATGAGTTCAATGATCTGAGGAAGAAAGGGCTTTG
CTTGGTCCCTCTCTCCATGTTGATAGATTACCTAGGTTGATTACTGTTCATGTACTGTAAGAACGCTGGTTCAGTTATAT
ACA------------------------------ATATATATATATATATATAGTTCGTACATCACTCTCTTGTGGACTGT
GTCAGCTGTGAACACTACTTC-----------------------------------------------------------
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>chr2B_1_TraesCS2B01G497700
AATAGTATAGGTTATATGCCACCAGAAGTATATATACCATTAG--AAACTTTT-TTGGTCAGTAATTAAA----------
--GGTTTCTAAATATAATTCTG-TTTAGAGATTCCAGTACGGACTACATACGGAGCAAAATAAGTGAACCTACACTATAA
AGTATATCTATATACACCCGTATGTAGTTCATATTGAAATATCTAAAAGC-ACTTGCATTTAGGAATGGAGGGAGTATTA
CTTTTTGTAGTGTACAATGCATATTCATTCATCATATTGACAATCTAGAAATACAAGTGTCCCTTATAAACTGACAGGGA
GGTAATGTCGAACCACACATTTTTTTTCCTACTCACAAACGAATGTGTATCTTTCCAGAAAACTTGATAGATTCATAGTG
TACTCCCACATATACATGTGGGGAATTCTTTTAGAACATGTGCATGCACTTTTGATTTCATTTTTTAAAATATGGAGACC
ACTTGAGCTCGGGATCCAAAGCAGTTACCACCAGTACAGCAGCTCCATCAATCCATTCCAAGGGA--AAACGT-GGCACA
AATGGAGAGATAATACTAGTAGCACCAATACTGCAATCTCCAACATATGTTAGTTAAACAAAGTCGCAGTTAGAAAAGAG
CAGAAAACTGGATAGCTATCAGCGTACCACATTGTTATTGGCAAGAGAGGCTTACAGTAGGTGGAGTGTAGCTCTCCATG
TATCACCAGCCGGCTATGCATTCCAACCGCTTCTTCTTCTGCTGCTGCTTGGGTCCCAATCACCAAAGAATATGCATGAT
GGCGATCGATCGATCGATCAATCGGTCACAATGATCGATCGCGGAATAATTCTCGATCAAGAGACCATTACAACGATAAG
ATTCCTCCATTGCCAATTTTTAAACCGGGCGCCAGTGTCTGACAGACAGTTCACGCTCATGTACTTCTATTCATATCCAC
TCGCTGGAGCCGGAGCCTGGAGCTATATATACGGTCAGCACGAGCCGTACCCAGCATTCCATCCAGAACACAACACCCGC
CTCGAAGCTT-ATCACTGCTGCTAGCCTTGCTTCTGCTTGCAGTTTCTCATACACATGGAGAAGATAACATCGCCACAAT
CTTCTTGCATCAGCCAGCCGGCTG---CGGTGGCGTCCATGTCGGCCGGCGAGAGCAGCTGGGCGATGCACTTTGCAAAC
TTCGTGGCATCAACAGACAACAGACAGGAGATGTATCACCAAGGAGGAGAAGCCTCTGACAGTGATTTCTCCTCTGGCTT
CTCTTCCTCATTTGATTCCTTGGGTGACGGCTCCGACACCGACTCCTTCCTCACGTCGGACCTCATGGATGAAGACGATG
AGGATGATTCTCTGCAGGACACTGCCTGTTCTTCCGCCGCTCGCCCTAAGGTTAGTAAAGGAAGAAAA-TTAACTTTCTC
TAGTTAGTCATAGATAGCTTGATGAACAGCAGTACATATTTAGCCTTTCTTCTAGGTTCTAACATGATTATGATTTTTGT
TGTACAGGTAACCGGCATGCATGATATGTTCATGAAGTCAATTCTAACCATGGATGCGAAGGACATGAACACCACCCAGC
TGGTATGTTCGAGAAGCAATCGCTATCATCTCTTTCTAGCTTCCTTCGGACGTTGTTTAGATG-TATAGTATAAGCTTTT
TCTTACAATTGTGTGTTCCTGAAACATTGCAGGCCAAGTATTTCCTCGACGCACGTTCAAGGCAGCAGGCGACTGGTGCG
GTTCAAGAAGTGATCAGCGGTGGAAATAGCAACGAGAAGCAGCTGCATGAGTTCAATGATCTGAGGAAGAAAGGGCTTTG
CTTGGTCCCTCTCTCCATGTTGATAGATTACCTAGGTTGATTACTGTTCATGTACTGTAAGAACGCTGGTTCAGTTATAT
ACA------------------------------ATATATATATATATATATAGTTCGTACATCACTCTCTTGTGGACTGT
GTCAGCTGTGAACACTACTTCCATCATGCCGTCGAGCTGTCCAATCATGCCATTAACTAATAAAAACAGGCATTCAACTA
CTCCCTCCGTTCCTAAATAATTGTCTTTCTAGAGATTTCAACAAGTGACTACATACGGAGCAAAATGAGTGAATCTACAC
TCTAAAACATGTCTGCGTACATCCGTATGTTGTAGTCTATTTGAGATGACTAGAAAGACAATTATTTAGGAACGGAGGGA
GTATCAAGGAACAATAAACAAGAAGTAAGAAATATTCAAGTGCATGACAGTGAGAAAAACTTTGTATATAGCTTCAGTAC
ATTGTATGTGTACCGAAACATTTTAAATGTCAAGTTGAGATACAATCCCAGTGTGATTCATCAGTGACGTTCAAGTTGAA
AACTTGAATGTAAAACGTATCTTACCTCAGCAGAAAGCTTGGGTCAGATTTTTACGCCGTGAACATTTTGCCGATATGCA
GGCATTTACCTTGAAATTAGTACTCCCTTCGTCCCAAAATAAATATTTTGAGCTTAGTACAAATTTATACTAGAGCTAGT
ACAAAGTAGAGACACTTATTTTTGGGACGGAGGGAGTAGAAGATATCAGGTTAGTACTAGCATCAAGTGAAATATGTACT
ATGTAATTCTCAATCTTTCATCAATATAATCATTAATGAGCTGGCTCACTCAGTTTGCCATCTGAGTTTGTAAGTCACAT
GATCAAAAGATTCCGTTAAGCCTATATGCACACGTCAATGATGTGACCAGTAGGTAGCTACAAGTAC----------GCT
GTAATACTCTTCTGACACAAAGGCTAATCTTTCTTTAATCACTGCTCACTAGAAAGTACCAGACGCCTGCGCATTTAATC
AGAATAAGCAGAAGGGGTATCTCTGACTTCCTAAAAATATCAGAACTTACCAAATCAAAACAAGTTCTTTATTAGTCTGC
TATGAATAAGTTCAGTAAGTAGTATATTTACATGATACAGTC----TTACGGAGGTTGCAACTAGCAATCCATTT
>chr2A_1
AATAGTATAAGTTACATGCCACCAAAAGTATATATACCATTAGAAAAACCTTT-TTGAGCAGTAATTCAATGGTACTCCC
TCGGTTTCTAAATATAAGTCTTTTTTAGAGATTCCAGTACGGACTACATACGGAGCAAAATGAGTGAATCTGCACTCGAA
AGTATGTCTATATATATTCGTATGTAGTCCATATTGAAATATCTAAAAAAAACTTGCATTTAGAAATAGAGGGAGTATTG
CTTTTTGTAGCGTACAATGCATATTCATTCATCATATTGATAATCTAGAAATACACGTGTCCCTTATAAACTGAAAGGGA
GGTAATGTTGAACCACACATTCTTTTTCCTACTCACAAATGAATGTGTATCTTTTCAGAAAACTTTGTAGATTCACAGTG
TTCTCCCACATATACATGTGGGACATTCTTTTAGAACATGTGCATGCACTTTTGATTTCATTTTTTAGAATATGTA-ACC
CCTTGAGCTCCGGATCCAAAGCAGTTACCACCAGTACAGCAGCTCTATCAACCCATTCAAATAAGAGAAACGT-GGCACA
AATGGAGAGATAGTACTAGTAGAACCAATACTGCAATCTCCAACATATGTTAGTTAAACAAAGCTGCAGTTAGAAAAGAG
CAGAAAACTGGATAGCTATCAGCGTACCACATTGTGATTGGCAAGAGAGGCTTACAGTAGGTGGAGTGTAGCTCTCCATG
TATCACCAGCCGGCTATGCATCCCAACTGCTTCTGCTGCTGCTGCTGCTTGGGTCCCAATCACCAAAGAATATGCATGAT
GGCGATCGATTGATCG--------GTCACAATGATCGATCACGGAATTATTCTCGATCAAGAGACCATTACAACGATAAG
ATTCATCCATTCTCAATTTTTAAAACGGGCGCCAGTGTCTGACAGACAGTTCACGCTCATGTACTTCCATTCATATCCAC
TCGCTGGAGCCGGAGCC-GGAGCTATATATACGGTCAGCACGAGCCGTACCCTGCATTCCATCCAGAACACAACACCCAC
CTAGAAGCTTTATCACTGCTGCTAGCC-TGCTTCTGCTTGCAGTTTCTCATACACATGGAGAACACAACATCGCCACAAT
CTTCTTGCATCAGCCAGCCGGCGG---CG---GCGGCCATGTCGGCCGGCGAGAGCAGCTGTGCTATGCACTTTGCAAAC
TTCGTGGCATCAACAGACAACAAACAGGAGATGGGTCACCAAGGAGGAGAGGCCTCTGACAGTGATTTCTCCTCTGGCTT
CTCTTCCTCATTTGATTCCTTGGGTGATGGCTCCGACACCGACTCCTTCCTCACGTCGGACCTCATGGATGAAGACGATG
AGGATGATTCTCTGCAGGACACTGCCTGTTCTTCCGCCGCTCGCCCTAAGGTTAGTAAAGGAAGAAAAATTAACTTTCTC
TAGTTAGTCATAGATAGCTTGATGAACAGCAGTACATATTTAGCCTTTATTCTAGGTTCTAACATGATTATGATTATTGT
TGTACAGGTAACCAGCATGCATGATATGCTCATGAAGTCAATTCTAACCATGGATGCAAAGGACATGAACACCGCCCAGC
TGGTATGTTCGAGAAGCAATCACTATCATCTCTTTCTAGCTTCCTTCAGAGGTTGTTTAGATATTATAGTATAAGCTTTT
TCTTACAATTGTGTGTTCCTGAAATACTGCAGGCCAAGTATTTCCTCGATGCGAGCTCAAGGAAGCAGGCGACTGGTGCG
GTTCCAGAAGTGATCAGCGGTGGAAATAGCAACGAGAAGCAGCTGCATGAGTTCAATGATCTGAGAAAGAAAGGGCTTTG
CTTAGTCCCTCTCTCCATGTTGATAGATTACCTAGGTTGATTACTGTTCATGTACTGTAAGAACGCCGGTTCAGTTATAT
ATACAATATATATATATATATATATATATATATATATATATATATATATATAGTTCGTACATCACTCTCTTGTGGACTGT
GTCAGCTGAGAACACTACTTCCATCATGCCGTCGAGCTGTCCAATCATGCCATTAACTAATAAAAACAGGCATTCAACTA
TCGAGAAAT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
------------AATAAACAAGAAGTGAGAAATATTCAAGTGCATGACAGTGAGGAAAACTTTGTATATTGCTTCGGTAC
ATTGTATGTGTACCGAAACATTTCAAATTTCAAGTTGAGTTAAAACCTCAGTGCGATTCATCAGTGGCATCCAAGTTGAA
AACTTGAATGTAAAACGTATCTTACCTCAGCAGAAAGCTTCGGTCAGATTTTTATGCTGTCAACATTTTGCCGAAATGAA
GACATTTACCTTGAAATT--------------------------------------------------------------
----------------------------------AGTAGAAGATATCAGGTTAGCAATAGCATCAAGTGAAATACGGATT
ATGTAATTCTCAATCTTTCATG-ATATAATGATTAGTGAGCTGGCTCATTCAGTTTGAAATCTGAGTTTGACAATCACAT
GGTCAAAAGATTCCGTTAAGCCTATACGCACACGTCAATGATGTGACCAGTAGGTAGAAGTAGAACTG-ACAGGCAAGCT
GCAATACTCTTCTGACACAAAGGCTAATCTTTCTCTAATCGCTACTCACTAGAAAGTACCAGAGGCCTGCTTAATTAATC
AGAGTAAGCAGAAGGGGTATCTCTGAGTTTCTATAAGTATCAAAACCTACCAAATCAAAACAAGTTCTTTATTAGTCTGC
TAGGAATAAGTTCAGTCAGTAGTATATTTACATGATACAGCAGTCTTTACGGAGGTTGCAACTAGCAACCCATTT
>chr2D_4
---AGTATAAGTTATATGCCACCAAAAGTATATATACCGTTAG--AAACTTTTGTTGATCAGTAATTCAATGGTACTCCC
TTGGTTCCTAAATATAAGCCTG-TTTAGAGATTCCAGTACGGACTACATACGGAGCAAAAAGAGTGAATCTACACTGTAA
AGTATGTCTATATACATCCGTATGTAGTTCATATTGAAATATCTAAAAAG-ACTTGCATTTTGAACGTAGC-GAGTATTA
CTTTTTGTAGCGTACAATGCATATTCATTCATCATATTGATAATCTAGAAATACACGTGTCCCTTATAAACTGACAGGGA
GGTAATGTCAAACCACACATTTTTTTTCCTACTCACAAACGAATGTGTATCTTTTCAGAAAACTTGATAGATTCATAGTG
TACTCCCACATATACATGTGGGGAATTCTTTTAGA-CATGTGCATGCACTTTTGATTTTATTTTTTAGAATATGTAGACC
ACTTGAGCTCGGGATCCAAAGCAGTTACCACCAGTACAGCAGCTCCATCAATCCATTCCAAGGGA--AAACGTGGGCACA
AATGGAGAGATAATACTAGTAGCACCAATACTGCAATCTCCAACATATGTTAGTTAAACAAAGTCGCAGTTAGAAAAGAG
CAGAAAACTGGATAGCTATCAGCCTACCACATTGTGATTGGCAAGAGAGGCTTACAGTAGGTGGAGTGTAGCTCTCCATG
TATCACCAGCCGGCTATGCATTCCAACTGCTTCTGCTGCC------GCTTGGGTCCCAATCACCAAAGAATATGCATGAT
GGCGATCGA----------------------TGATCGATCGCGGAATTATTCTCGATCAAGAGACCATTACAACGCTAAG
ATTCCTCCATTGCCAATTTTTAAAACGGGCGCCAGTGCCTGACAGACAGTTCACGCTCATGTACTTCCATTCATATCCAC
TCGCTGGAGCCGGAGCC-GGAGCTATATATACGGTCAGCACGAGCCGAACACAGCATTCCATCCAGAACACAACACCCGG
CTAGAAGCTT-ATCACTGCTGCCAGCC-TGCTTCTGCTTGCAGTTTCTCATACACATGGAGAACACAACATCGCCACAGT
CTTCTTGCATCAGCCAGCCGCCACCGCCG---GCGTCCATGTCGGTCGGCGAGAGCAGCTGGGCTATGCACTTTGCAAAC
TTTGTGGCATCAACAGACAACAGACAGGAGATGGATCACCAAGGAGGAGAAGCCTCTGACAGTGATTTCTCCTCTGGCTT
CTCTTCCTCATCTGATTCCTTGGGTGATGGTTCCGACACCGACTCCTTCCTCACGTCGGACCTCATGGATGAAGATGACG
AGGATGATTCTCTGCAGGACACTGCCTGTTCTTCCGCCGCTCGCCCTAAGGTTAGTAAAGGAAGAAAAAT-AACTTTCTC
TTGTTAGGCATAGATAACTTGATGAACAGCAGTACATATTTAGCCTTTATTCTAGGTTCTAACATGATTATGATTTTTGT
TGTACAGGTAACCAACATGCATGATATGTTCATGAAGTCAATTCTAACCATGGATGCGAAGGACATGAACACCGCCCAGC
TGGTATGTTCAAGAAGCAATCTCTATCATCTCTTTCTAGCTTCCTTCAGACGTTGTTTAGATGTCATAGTATAAGCTTTT
TCTTACAATTGTGTGTTCCTGAAATATTGCAGGCCAAGTATTTCCTCGATGCGGGTTCAAGGCAGCAGGCGACTGGTGCG
GTTCCAGAAGCGATCAGCAGTGGAAATAGCAACGAGAAGCAGCTGCATGAGTTCAATGATCTGAGGAAGAAAGGGCTTTG
CTTAGTCCCTCTCTCCATGTTGATAGATTACCTAGGTTGATTACTGTTCATGTACTGTAAGAACGCTGGTTCAGT--TAT
ATACAATATATATATATATATATATATATATATATAT--ATATATATATATAGTTCGTACATCACTCTCTTGTGGACTGT
GTCAGCTGAGAACACTACTTCCATCATGCCGTCGAGCTGTCCAATCATGCCATTAACTAATAAAAACAGGCATTCAACTA
TCGAGAAAT-----------------------------------------------------------------------
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------------AATAAACAAGAAGTAAGAAATATTCAAGTGCATGACAGTGAGGAAAACTTTGTATATTGCTTCAGTAC
ATTGTATGTGTACCGAAACATTTCAAATCTCAAGTGGAGGTAAAACCTCAGTGCGATTCATCAGTGGCATCCAAGTTGAA
AACTTGAATGTAAAACGTATCTTACCTCAGCAGAAAGCTTCCGTCAGATTTTTATGCCGTCAACATTTTGCCGAAATGCA
GGCATTTACCTTGAAATT--------------------------------------------------------------
----------------------------------AGTAGAAGATATCAGGTTAGCACTAGCATCAAGTGAAATATGGACT
ATGTAATTCTCAATCTTTCATG-ATATAATGATTAGTGAGCTGGCTCATTCAGTTTGAAATCTGAGTTTGACAATCACAT
GGTCAAAAGATTCCGTTAAGCCTATACGCACACGTCAATGATGTGACCAGTAGGTACAAGTAGAACTGTACAGGCAAGCT
GTAATACTCTTCTGACACAAAGGCTAATCTTTCTTTACTCGCTACTCACTAGAAAGTACCAGAGGCCTGCTTAATTAATC
AGAGTAAGCAGATGGGGTATCTCTGACTTTCTATAAGTATCAAAGCCTACCAAATCAAAACAAGTTCTTTATTAGTCTGC
TAGGAATAAGTTCAGTCAGTAGTATATTTACATGATACAGTC----TTACGGAGGTTGCAACTAGCAACCCATTT
>SNPs
---------S--------------S--------------------------------S---------S------------
-----------------S-------------------------------------------S------S-------S---
-----S----------S-------------------------------SS-------------S---S------------
----------S-----------------------------S--------------S------------------------
------------------------------------------------------S-------------------------
-------------------------------------------------------------------S------S-----
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-----------------------------------S--------------------------------------------
---------------------------S------S--S------------------------------------------
----------S-----SSSSSSSS-----------------------S--------------------------------
------------------------S------------------------------------------S------------
-----------------S--------------------------------------------------------------
--S------------------------S-----------------------------------S-S--------------
----------------------S------SSS--------------------------------S---------------
---------------------------------S----------------------------------------------
---------------------------S----------------------------------------------------
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------------------------------------------------S-------------------------------
-------------S-----------------------------------------------------------S------
---------------------S-------------------------S--------------------------------
------------------------S------------------------S--SS--------------------------
----S---------------------------------------------------------------------------
---S----------------------------------------------------------------------------
-S------------------------------------------------------------------------------
--------S-----------------------------------------------------------------------
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS------------------------------------------S--------------S----------
-----------------------S----S----------S--S--S-S-----S------------S-S-S---------
----------------------------------------S-------------S-----S-------------S-----
------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------S---------------------S---
---------------------SS-------S----S------------S--------SS-----------SS-S------
-S------------------------S------------------------------SSSS-SSSSS-------------
----------------------------------------S--S-------------------S------SS-S------
---S-------------------------S---S--S-----S---S---------------------------------
--S-------------S---------------------------------------------------S------
>forward_811
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-----------------------------------------------------------------------ATGCATGAT
GGCGATCGATC---------------------------------------------------------------------
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>reverse_2583
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----------------------TGGGACGGAGGGAGTAGAAG--------------------------------------
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