>input_sequence_64328
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------------------------------------------------------------------------ATGCTGGG
GCATCTGGCCGGGCTGGTGAAGGTGCGGGTGACGCGCGGGGTGAACCTCGCCATCCGCGACCTCCGCTCCAGCGACCCCT
ACGTCGTCGTCCGCATGGGCAAGCAGGTTCGT-----------------CTCGTCTCTTTTCCCCTTCTCTCGCTGTGTA
GATGCAAGGCACCGTCGATCTGCCTGTCGATTCCGCGGATTT-AGCCCTCTTTTGGAAAGAATTAATCGCCTCTCCGCGG
TCCCCGTTCTGGAGTGTTCTCCTCCTGATTGTTCTCCTCCGCTCTGATTTTTTCGCAGAAGCTCAAGACGCGAGTGGTGA
GGAAGAGCATCAATCCGGAGTGGAACGACGAGCTGACCCTCTCCGTCGAAGATCCCACCATTCCTGTCAAACTGGTATGT
GTTCCTTTCTCTTTCCCCCTTTTCTCTCTCGCATGGCACGAAAATTTTGATCGATTTTTGGGAAATCTCC---TAAACCG
AATCGTGAAACGCAATCAATTTTCTCCCTGC-AAAAAAGAGAAAGAAAGGAAAATAATAACAATGCCTTTGCACAAAAGG
AAAGGAAGGTGAACATTCTGGAAACGCGGGGTACAGTACAGACAAGCAGCCGAAATGGTGACTGGATGAGAGACAGCTGC
CTGAGAACCAGCTCATTGCTTCTTGTTCC----TGTGCAGGACGTGTTCGACAAGGACACATTCTTCGACGACCCGATGG
GCAACGCGGAGCTGGACATCGGCCCGCTGGTGGAGGCCGCGACGATGAGGATCCAGCTGCAGGGCGTCGCCGACGGCACC
GTGGTGAAGAAGCTGGTGCCCAACCGGCAGAACTGCCTCGCCGAGGAGAGCGCCGTCTACCTGTCCGAGGGCACGGTGAA
GCAGGACGTGGTGCTCAGGCTGAGGAACGTCGAGTGCGGGGAGGTCGAGCTCCAGCTCCAGTGGATCGACATCCCAGGCT
CCAAGGGCGCATCAGGCTTTTAA---------------------------------------------------------
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>chr2A_1_TraesCS2A01G501300
GCTCCTAGGAGCGTGTCAACCGTAGAATTACGATCAATCTC-TTTTGCTGCCTTGTAGTCGGAGGGGAGCGGATCGATTT
GGTTTGTACCCAATGCGTGAGGTTTTTGCTTGCCAGCCAAACTTACTTTTCATTATTTCCTTTGCTGCCTAGCGATTTAT
TACTCCGCACTAGTATCCTTC------TCCTTAAAGCTTAAGCAATTCTGAAATGGCATGATTGCACTGTACAACAACAT
AACATCCAAACCGAAGAAGTCGCTGGCTGCTTCAACGGCTCCGCTCGA-GCTCCGCCACTGCAGGCATGTACTACTGTAA
-------------AAACGAGTGAGCGCGGACGCACCCAAGGTGCAGCTTCGGCGAACTTTTGAATCACGTCGGGACTCGC
CTTCCTTTTTCCTGAGAAAATCGCGTCGAAACTTGCCTGACGGGGCAGACCAG---------------------------
----AAATGCTAATGCCGTGTCCTCCACTCGCTCGCTCCCGGAAGAC----TGATTGATTGGTGGCCATTTTCACTTCTT
GATGATGACAAATTCGACAAAAGCCACGCTCTACTTTGCATCTTGATAGGATCGCTCTAGGCTTCCAGTGGGATGTTTCT
CATGAACCCAACCAAATCTGGACGAGAGAGGTGCGGGCACCAACTGTGAATTTGGGAGTGGT---TGAGTGGAAGAAAT-
-----------------------GTACTGTACTATTTCGCC-------------------------CCAACGCCAACCCA
CACGGCAAGATAAAAAGCGTTACTAGTACTAGTAGCAAAACTGGAGCACACACAGTCCACGCGCTCCAGGTGGTGGAGCT
GGTCACTCGTTGTCGTTGTCTCGTAGCAGGCGTCGCTCACCCGGCGGAG---TAGTATTTAGCAGGAGCGGGGG-TGGGG
CGGAGGGTGGAGAGGAGAGAAAGCAGCGGCTGCCGTCCCCTGCCTGCAACTGCAACCCAACTCAACCAGCCAGTCGCCAT
TACTCTTGTTTCTCATCCGACCAGTGACCACCGACCGCGAGCGCGAAGCAGGAGGAGCGGAGGAGCGGCACCATGCTGGG
GCATCTGGCCGGGCTGGTGAAGGTGCGGGTGACGCGCGGGGTGAACCTCGCCATCCGCGACCTCCGCTCCAGCGACCCCT
ACGTCGTCGTCCGCATGGGCAAGCAGGTTCGT-----------------CTCGTCTCTTTTCCCCTTCTCTCGCTGTGTA
GATGCAAGGCACCGTCGATCTGCCTGTCGATTCCGCGGATTT-AGCCCTCTTTTGGAAAGAATTAATCGCCTCTCCGCGG
TCCCCGTTCTGGAGTGTTCTCCTCCTGATTGTTCTCCTCCGCTCTGATTTTTTCGCAGAAGCTCAAGACGCGAGTGGTGA
GGAAGAGCATCAATCCGGAGTGGAACGACGAGCTGACCCTCTCCGTCGAAGATCCCACCATTCCTGTCAAACTGGTATGT
GTTCCTTTCTCTTTCCCCCTTTTCTCTCTCGCATGGCACGAAAATTTTGATCGATTTTTGGGAAATCTCC---TAAACCG
AATCGTGAAACGCAATCAATTTTCTCCCTGC-AAAAAAGAGAAAGAAAGGAAAATAATAACAATGCCTTTGCACAAAAGG
AAAGGAAGGTGAACATTCTGGAAACGCGGGGTACAGTACAGACAAGCAGCCGAAATGGTGACTGGATGAGAGACAGCTGC
CTGAGAACCAGCTCATTGCTTCTTGTTCC----TGTGCAGGACGTGTTCGACAAGGACACATTCTTCGACGACCCGATGG
GCAACGCGGAGCTGGACATCGGCCCGCTGGTGGAGGCCGCGACGATGAGGATCCAGCTGCAGGGCGTCGCCGACGGCACC
GTGGTGAAGAAGCTGGTGCCCAACCGGCAGAACTGCCTCGCCGAGGAGAGCGCCGTCTACCTGTCCGAGGGCACGGTGAA
GCAGGACGTGGTGCTCAGGCTGAGGAACGTCGAGTGCGGGGAGGTCGAGCTCCAGCTCCAGTGGATCGACATCCCAGGCT
CCAAGGGCGCATCAGGCTTTTAAT-----TAACTCTCTGTGCACTCTCTGCTTTTTGCAGAGTTCTTTGTCAAGTGAAAA
GCTGGGGTAAATTATGTTTAGAATCGAAGCTTAAGCTAGGATTTAGATGTTGCGATAGTATGACCGCCGTCAGTGTGGTC
GAACTTCCTAAGACGGACCGAAGAAACAAAGAGGTGATGGCAGGGGCGTAAAGTGTCTCAGGCTTCCAATCCATCCTCCT
TGCTTGCTTGATGTGTTCTGCATCTGCGATCGCGAGAGGAAAGGCTACAATGTGCTGAACAGTCTTGGCTTTTCCGAACC
TTGGTTGCCGATGCTAGTCAGTCGGTGACGGGTGATTAATTGCAGTTGCA-GATCGAAGAGTAGGTCTGGTTTCTGAAGG
AGAATTTTCTTTTGTTTCAGGGAAATTTCTGCGGTGATCTTGATTTGCAACGCGTAACGATATGCAACTTCTGTGTATAG
ACGCGTAATGCTCAGAGACTTGAACACCCTCTTGACTTGATCGTCAAACCATGCTTGTATATTACTTCCTCTGTGAACTA
ATATAAGATCATTTATAGATCACTAAAGTAGTGATCTGGACGATCTTATAGAGAGTTTTTACGGTACATCATACTACCGG
AAATAGTGGGTAGTATATAATTGATCCGACAAGTGATGTCGACACCGATGACTTCCCGATTAAGATAGGACTGCATCAGG
AGTCAGCTTTGAGCCCTTATCTTTTTGCATTGGTGATGGATGAGGTCACAAGGGGTATACAAGGAGATATCCCATGGTGT
ATGCTCTTTGCGGATGATGTGGTGCTAGTTGACGATAGTCGGACGGGGGTAAATAGGAAGTTAGAGTTATGGAGACAAAC
CTTGGAATCGAAAGGGTTTAGGCTTAGTAGAACTAAAACCGAGTACATGATGTGCGGTTTCAGTACTACTAGCTGTGAGG
AGGAGGAGGTTAGCCTTGATGGCCAGGTGGTACCTCGGAAGGACACCTTTCGGTATTTGGGGTCAATGT
>chr2B_1
GCTCGTAGGAGCGTGTCAACCGTAGAATTACGATCAATCTC-TTTTGCTGCCTTGGAGTCGGAGGAGAGCGGATCGATTT
GGTTTCTACCCAATGA-TGAGGTTTTTGCTTGCCAGCCAAAGTTACTTTTCATTATTTCCTTTCCTGCCTAGCGATTTAT
TACTCCACACTACTACTAGTATCCTTGTCCTTAAAGCTTAAGCAATTCTAAAATGGCATGATTGC--------ACAACAT
AACATCCAAACCGAAGAAGTCGCTGGCTGCTTCGACGGCTCTGCTCGC-GGTCAAGGCGGACTCGACGGTCATGCAGAAA
AAGGCAGACATGTAAACGAGTGAGCGCAGACGCACCGAACGTGCAGCTGCGGCGAAC-TTTGAATCACGTCGAAACTCAC
CTTCCT---------------------GAAACTTGCCTGATGGGGCAGATCGATCGGCCTGAAAAGCCCATCGACAGCTC
AGAAAAATGCTAATACCGTGTCCTCCACTCGCTCCCGGCA--------GATTGATTGATTGGTGGCCATTTTTATTTCTT
GATGATGACAAATTCGACAAAAGCCACACCCTAGTTTGCATCTTGATAGGATCGTTCTAGGCTTCTAGTGGAATGTTTCT
CGTGAGCCCAACCAAATCTGGACGAGAGGAGTGCGGGCACCAACTGTGAATTTGGGAGTGGTGGTTGAGGGGAAGAAAT-
-----------------------GTACTATTTCACCCCCAACGGAATGTATTTTCCGATGGAGACACCCACGCCAATCCA
CCCGGCAAGATAAAACGCGTTACTAG---------CAAAACTGGAG----CACAGTCCACGCGCTCCAGGTGGTGGAGCT
GGTCACTCGTTGTCGTTGTCTCATAGCAGGCGCCGCTCATCCTGGGGAG---TAGTATTTAGCAGGAGCGGGGGGTGGGG
CGGAGGGT-----GGAGAGAAAGGAACGGCTGCCGTCCCCTGCCTGCAACC-----GCAACTCAACCAGTCAGTCGCCAT
TACTCTTGTTTCTCATC------------ACCCACCGCGAGCGCGAAGCA--------GGAGGAGCAGCACCATGCTGGG
GCATCTAGTCGGGCTGGTGAAGGTGCGGGTGACGCGCGGGGTGAACCTCGCCATCCGCGACCTCCGCTCCAGCGACCCCT
ACGTCGTCGTCCGCATGGGCAAGCAGGTTCGTTCCGTCTCGGTCTCCT-CTCCTCTCTTTCCTCCTTCTCTCGCTGTGTA
GAT-----GCACCGTCGATCTGCCTGTCAATTCCGCGAATTTTAGTCCTCTTTTGGAAAGAATTAATCGCCTCTCCGGGG
TCCCCGTTCTGGAGTGTTCTCCTCCTGATTATTCTCCTCCGCTTTAA-TTTTTCGCAGAAGCTGAAGACGCGAGTTGTAA
GGAAGAGTATCAATCCGGAGTGGAACGATGAACTGACCCTCTCCATCGAAGATCCTACCATTCCTGTCAAACTGGTATGT
GTTCCGTTCTCTTTCCCCCTTTTCCCTCTGTCGTGCTTCAGAAATTCAACTGATTTTTTGGGAAATTCCC---TAAATCG
AATCATGAAACGCAATAAATTT-CTCCCTGCAAAAAAAGAGAAAGAAAGAAAAATAATGT-AATGCCTTTGCACAAAAGG
AAAGGAAGGTGAACATTCTGGAAACGCGGGGTA-----CAGACAAGCAGCCGAAGTGGTAACTGGCT----GACAGCTGC
CTGACAACC----CATTGCTTCTTCTTCTTTCTTGTGCAGGACGTGTTCGACAAGGACACATTCTTCGACGACCCGATGG
GCAACGCGGAGCTGGACATCGGCCCGCTGGTGGAGGCCGCGAGGATGAGGGTCCAGCTGCAGGGCGTCGCTGACAACACC
GTGGTGAAGAAGCTGGTGCCCAACCGGCAGAACTGCCTCGCCGAGCAGAGCGCCATCTACCTGTCCGAGGGCACGGTGAA
GCAGGACGTGGTGCTCAGGCTGAGGAACGTCGAGTGCGGGGAGGTCGAGCTCCAGCTCCAGTGGATCGACATCCCCGGCT
CCAAGGGCGTATCAGGCTTTTAAT-----TAGCTCTCTGTGCACTCTCTGCTGTTTGCAGAGTTCTTTCTCAAGTGAAAA
GCTGGAGTAAATTCTGATTAGAATCCAAGCTTAAGTTAGGATTTAGATTATGTGCGATAGATGACT------GTGTGGTC
GAACTTCCTAAGATGGACTGAAAAAGG-AAGAACTGGTGGCAGGGGCGCAAAAATTCTCAGAATTCCA-----TCCTCCT
TCCTT---------------------------------------------------------------------------
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>chr2D_30
-----------------------------ACGATTAATCTCTTTTTGCTGCCTTGGAGTCGGAGGAGAGCCGATCGACTT
GGTTTCTACCCAACGCGTGAGGTTTTTGCTTGCCAGCCAAAGTTACTTTTCATTATTTCATTTCCTGCCTAGCGATTTAT
TACTCCACACTACCACTAGTATACTTTTCCTTAAAGCTAAAGCGATTCTAAAATGGCATGATTGC--------ACAACAT
AACATTCAAACCGAACAAGTCGCTGGCTGCTTCAACGGCTCTGCTCCTGGGTCAAGACGGACTCGATGGTCATG------
--------CATGTAAACGAGTGAGCGCAGACGCACCGAACGTGCAGCTTCGGCGAAC-TTTGAATCACGTCGAGACTCAC
CTTCCTTTTT-CTGAGAAAATCGCGTCGAAACTTGCCTGATGGGGCAGATCGATCGGCCTGAAAAGCCCATTGACAGCTC
AGAAAATGCTAAATGCCGTGTCCTCCACTCGCTCGCTCCCGGAAGATTGATTGATTGATTGGTGGCCATTTTTAGTTCC-
--TGATGACAAATTCGACCAAAGCCACACTCTACTTTGCATCTTGATAGTATCGTTCTAGACTTCCAGTGGGATGTTTCT
CGTGAGCCCAACCAAATCTGGCCTCGAGAAGCGCGGGCACCAACTGTGAATTCGGGAGTAGT---TGAAGGGAGTACTTT
TTTTTTTTTGAAATAAAAATGCAGTACTATTTCGCCCCCAACGGAATGTGTTTTCCGATGGAGACACCCACGCGAATCCA
CCCGGCAAGATAAAAAGCGTTACTAGTAGTAGCA--AAAACTGGAG----CACAGTCCACGCGCTCCAGGTGGTGGAGCT
GGTCACTCGTTGTCGTTGTCTCATAGCAGGCGTCGCTCACCCGGGGGAGTACTAGTATTTAGCAGGAGCGGGGGGTGGGG
CGGGGGGT-----GGAGAGAAAGCAACGGCTGCCGTCCCCTGCCTGCCACTCAACTGCAACTCAACCAGTCAGTCGCCAT
TACTCTTGTTTCTCATC------------ACCCACCGCGAGCGCGAAGCAGGAGGAGCGGAGGAGCAGCACCATGCTGGG
GCATCTGGTCGGGCTGGTGAAGGTGCGGGTGACGCGCGGGGTGAACCTCGCCATCCGCGACCTCCGCTCCAGCGACCCCT
ACGTCGTCGTCCGCATGGGCAAGCAGGTTCGTTCCGTCTCGGTCTCGAGCTCCTCTCTTTTCCCCTTCTCTCGCTGTGCA
GAT-----GCACCGTCGATCTGCCCGTCGATTCCGCGAATTTTAGTCCTCTTTTGGAAAGAATTAATCGCCTCTCCGCGG
TCCCCGTTCTGGAGTGTTCTCCTCCTGATTATTCTCGCCCGCTGTAA-TATTTCGCAGAAGCTGAAGACGCGAGTGGTGA
GAAAGAGCATCAATCCGGAGTGGAACGACGAGCTGACCCTCTCCATCGAAGATCCCACCATTCCTGTCAAACTGGTATGC
GTTCCATTCTCTTTCCCCCTTTTCCCTCTCTCGTGCCTCAGCAATTCAACTGATTTTTGGGAAAATTTCCTAGTAAATCG
AATCGTGAAACGCAATCAATTTTCTCCCTGC-AAAAAAGAGAGAGAAAGAAAAATAATGT-GATGCCTTTGCGCAAAAGG
AAAGGAAGGTGAACATTCTGGAAACGCGGGGTACAGTACAGACAAGCAG-----ATGGTAACTGGCTGAGAGACAGCTGC
CTGACAACC----CATTGCTTCTTGTTCTTCTT----CAGGACGTGTTCGACAAGGACACATTCTTCGACGACCCGATGG
GCAACGCGGAGCTGGACATCGGGCCGCTGGTGGAGGCCGCGACGATGAGGATCCAGCTGCAGGGCGTCGCCGACAACTCG
GTTGTCAAGAAGCTGGTGCCCAACCGGCAGAACTGCCTCGCGGAGGAGAGCGCCATATACCTGTCCGAGGGCACGGTGAA
GCAGGACGTGGTGCTCAGGCTCAGGAACGTGGAGTGCGGGGAGGTCGAGCTGCAGCTCCAGTGGATCGACATCCCCGGCT
CCAAGGGCGCATCAGGCTTTTAAATTCCATAATTAGCTCTGCACTCTCTGCTGCCTGCAGAGTTCTTTCTCAAGTGAAAA
GCTGGGGTAAATTATGTTTAGAATCGAAGCTTAAGCTAGGATTTAGATGTTGCGATAGTATGGCCGCCGTCAGTGTGGTC
GAACTTCCTAAGACGGACCGAAGAAAGAAAGAGCTGATGGCAGGGGCGTAAAGCGCGTAAGGAT-----TCCATCCTCCT
TGCTTG----ATGTGCTCTGCATCTGCAATCCGGAGAGCAAAGGCTACAATGTGCTGATCAGTCTTGGCATTTCCGAACC
TTGGTTGCCGATGCTAGTCAGTCGGTGACGGGTGATTAATCGCAGTTGCAGGATCGAAGAGTAGGTCTGGTTTCTAAAGG
AGAATTTCCTTTTGTTTCAGGGAAATTTCTGCGGTGATCTTGATTTGCAGCGCGTAACGATATGCAACTTGTGTGTTTAG
ACGCGTAATGCTCACAGACTTGAACACCGTCTTGACTTGCTCGTCAGACCATGCTTGCATATTACTCCCTCTGTAAACTA
ATATCAGATCATTTAA--ATCATTAAAGTAGTGGTCTAAACAATCTTAT-------------------------------
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>SNPs
----S--------------------------------------------------S---------S--------------
-----S-----------------------------------S---------------------S----------------
------S-----S--SSSS-S----------------------------S---------------SSSSSSSS-------
-----------------------------------------S-----S--S--SSSSSSSS-SS-SSS--SS-S-S-S--
---------------------------S--------S--S-----------------S--------------S-----S-
----------S-----------------------------S--------S-SS---------------------------
----------------------------------------------S-------------------------S-S-----
---------------------------S--------------------------S-------------------------
-S---S-----------------------S---------------------------------------S----------
----------------------------S-SSS-SSS-SSS---------------------------S-------S---
-S--------------------------S---S-S-----------SSSS------------------------------
----------------------S---------------------S-----------------------------------
--------SSSSS------------S-------------------------SS-SSS------------S----------
-----------------SSSSSSSSSSSS---S---------------------------------S-------------
--------S-----------------------------------------------------------------------
----------------------------------------------------S---------------------------
---SSSSS-----------------------------S-------S----------------------------------
------------------------------S------------S-S-S---------------S----------------
--------------------------------------------S-----------------------------------
-----S------------------S-----S-S--S-S-SS-----SSSS-SSS------------S----------S--
-------------------------------------------------S--------SSS-------------------
-----------------------------------------------------------S-----S--------------
----S----SSSS---------------S---------------------------------------------------
--------------------------------------------------------------------------SS----
------------------------------------------------------S-------------------------
---------------------------------------------------------------------------S----
----------------------------------------------------S---------------S-----------
--------------------------------------------------------------S-----------------
--------------------------S------S-------------------S--------S-----S-----------
------SSSS-----S-----------S---SS-----S-------------------S----------S----------
----------------------------------------S----------------------------------S----
-------S-----------------------------------------S--------------------S-----S---
--------------S-------------S----------S------S----------S--------S-------S-----
----S----------SSS----S----------S---SS--S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_399
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-----------------------------------------------------------TTGAATCACGTCGGGACTCG-
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>reverse_1545
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------------------------TCTCTCGCATGGCACGAAAA------------------------------------
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>forward_1326
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--------------------------GTCGATTCCGCGGATTTAGC----------------------------------
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>reverse_3036
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---------------------------------------------------------------------------TGAGG
AGGAGGAGGTTAGCC------------------------------------------------------
