>input_sequence_64247
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----------------------------------------------------CTTGTCGAAG------------------
----------------------------------------------------------------------CACCATTCAG
TCAGAGCATCCCTCCCCTTCCGCAATTTCGCACCTCAAAGCTTGTTCTAGACGCTTCTAGAATCTAGGCCGCGGCATGGG
CAACGGCCTCTCCCCTTGCTTGCGCGCCCTGGCCGTGCACGGCAAGGGAGCGGAGGCGAGGCTGGTGTTCTGGGGCGGGC
AGACGAGGCTCGCCGCAGCTTCCGGCGGGCGGTTCACCACGGCCGGCGACGTCACGGCGGAGGCCCCCGACCACCTCGTC
TGCTCCGGCGACTCCTTCTTCATCGGCCTCCCGATCCCCGCGCTGCCGCCGGGCGAGGAGCTGCGGGCGGGGCGGACCTA
CTTCGTGCTCCCCGCGGCCCGGTTCTCCAGCTGCCAGGCGCTCACCGCGGCCTCGCTCGCGTCGCTGTCGCCGGCCCCGA
CCAAGGTGTCGCTCGCCGGCGAGTCGTCCCCGTTCGAGTACGTCACGGGCGCCGACGGCATGGCGCTCATCAGGGTCCTC
CCGGAGTTCATCGAAAAGGTGATCACGTCCGACGGTGGCGGCGACAAGAAGTGCGGCGCGGCGGCGCCGGAACAGCTGTG
CAGCACGCCGGAGCTGAGGAAGCACTACATGCAGCTGGTGGGGGCGAGGCAGCAGCGGCCGTGGTCGCCGGGGCTCGAGA
CGATATCGGAGGCCAGGAAGGGGAGAAGGATGCCGACATGCCGTCGTCGGTGAGGCTGGTCGGGCTGGCAAAGAATTCAA
GATAACAGTAGCAGCCCCGCGTGCGTT-ATTGCCAAAAGTGGTGG--------------------CCATCAAGAGAGATG
GAGTTTAGTTTTTCAGTCTCGCTTAATTGTTCATACTAGCGGAAAAGAGGCAAGAGTGCAAGATAGTTCAGAAGGAGATG
GGTAG--AAAAAATCTGATTTAGTTTTAGTTCATTCAGTTTTATGTTACACCAAAAAATTGGATGCAAATGAATGAATGA
GTTTGACATTG---------------------------------------------------------------------
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-----------------
>chr1D_1_TraesCS1D01G241100
ATATGTCTCAGATATCTGAATAGCCTCTTGGTTAATCTTGTAAGATAATAAGTTATTAATATATATCCTAATTTCTCCAT
TGTATCCGAATCTGGATAAATAAGTAGTACTATATAAACAAATGGTCGCATTGGTGACATAAGATCCCAAAATAATGTCC
TCCCAACTCTGACAAAACAAAGATTCATCATTCCGTGACCGATACGACATCTAAATTAAAGCGATTGTTATCTTCTCTTG
CGCCATCCATGCCATCTAGAGATGACGATAACACTTTGTTGTAGATATGTATCTTTTGATATCT---CTGGCAATCAATG
ATCATGTTAATGCAATGACTAAAACTGAACCGGAAAACACGCGAAGAAGTAAGTATCTCCTAAAATGCACGCCACAATTA
TCTTTAGGCGTCGAGAGCATATCTCTTCACCGGAAGAAGACAATGTTACGTTACTTTCGATGTCTTCTCTCGCAAGCAAA
GGTAATGCGATGAGCAAAACTGGACCGAAAAACACGCTAAGAAGCAAAGCATCTTCTAAAATTGTGCGGCATAGTTATCT
CTTCAATGTCGAGAGATTATCTCTTCATCAATAGAAGGCAATAGTATCTTCCTTTTTTTTCTCTCTATGCATCAATTATT
AAATATTCTATCATGGTTGAATGAACTG----AGTGATTGGAGCACTGTTAGATGTCAAATGAAATATCTCATTTTACTT
TCCATGAGAAAAACCATTCACTAATTGCTAGAAGCT-CCATTTCCAAAATGGGCGTTGACATTGCCCACTAACAAGTATA
TTAACAAAGCCATCTATCTTTCCCTCAAAAAAGAAAAGG-AAAAAAGAAG---AACTAAGGTCAACTGTCCTGATATTTG
AACAGCCGGCCGGTCAACTTTTGAGTAAAATAATACCCATAATCAAACCCCCCAACTCTGACTTTTCAAATGTCAACCCA
CACACCCAACCCCCTCCCTATATATACATCCCCACACCAGGAATCCTCAAATCTTGTCGAAG------------------
----------------------------------------------------------------------CACCATTCAG
TCAGAGCATCCCTCCCCTTCCGCAATTTCGCACCTCAAAGCTTGTTCTAGACGCTTCTAGAATCTAGGCCGCGGCATGGG
CAACGGCCTCTCCCCTTGCTTGCGCGCCCTGGCCGTGCACGGCAAGGGAGCGGAGGCGAGGCTGGTGTTCTGGGGCGGGC
AGACGAGGCTCGCCGCAGCTTCCGGCGGGCGGTTCACCACGGCCGGCGACGTCACGGCGGAGGCCCCCGACCACCTCGTC
TGCTCCGGCGACTCCTTCTTCATCGGCCTCCCGATCCCCGCGCTGCCGCCGGGCGAGGAGCTGCGGGCGGGGCGGACCTA
CTTCGTGCTCCCCGCGGCCCGGTTCTCCAGCTGCCAGGCGCTCACCGCGGCCTCGCTCGCGTCGCTGTCGCCGGCCCCGA
CCAAGGTGTCGCTCGCCGGCGAGTCGTCCCCGTTCGAGTACGTCACGGGCGCCGACGGCATGGCGCTCATCAGGGTCCTC
CCGGAGTTCATCGAAAAGGTGATCACGTCCGACGGTGGCGGCGACAAGAAGTGCGGCGCGGCGGCGCCGGAACAGCTGTG
CAGCACGCCGGAGCTGAGGAAGCACTACATGCAGCTGGTGGGGGCGAGGCAGCAGCGGCCGTGGTCGCCGGGGCTCGAGA
CGATATCGGAGGCCAGGAAGGGGAGAAGGATGCCGACATGCCGTCGTCGGTGAGGCTGGTCGGGCTGGCAAAGAATTCAA
GATAACAGTAGCAGCCCCGCGTGCGTT-ATTGCCAAAAGTGGTGG--------------------CCATCAAGAGAGATG
GAGTTTAGTTTTTCAGTCTCGCTTAATTGTTCATACTAGCGGAAAAGAGGCAAGAGTGCAAGATAGTTCAGAAGGAGATG
GGTAG--AAAAAATCTGATTTAGTTTTAGTTCATTCAGTTTTATGTTACACCAAAAAATTGGATGCAAATGAATGAATGA
GTTTGACATTGATACTTTGCTGCAGTTCATCATAATTCCATTGATTTGATCTCCGGCTGGTCCAGCTGGATCATAAAAAT
GAAATTAGAGGACTCAAATTCCGTGTTCCCTTTTCTAATCTCGACG-GTACTAATAAGTTCCAAATGATCTGTCTGAATT
TTTGTATTTTTATTATTTTACTGAAGTTAAGTTCAACATCAAATCTAAAGAATATTCAAAGAATACCCCTTGAATATCAT
GTGCTCTCGGAGCACCTAAGTTCAGGTGCTCTAGCGCGAGCTCGGCCCTTGATTGTAGATCAAACAATCAGATGAGGAGT
TACTGGAACTATGTGGAATTACGGGACTCCTTTGGG-TTGTCTGCAAATTCGTGTGAGCTCTCCCTACAACCATGGGATG
TAGATCCAAGGGCCGAGCTTCTTCTGGAACACCTGAACTTAGGTGCTCTGAGAGCAAAGGATATTT--------------
-----------------------------CCCCCTAAGACCGGACTTGATTGGCGCGTCAAAAGAAAAACGCCCTTACAT
TATTTAAAATCGAGTGAATTCCGCACTTA-ATGTTCGAAAGATGCGGCTTGTTGCATCGTACGCGTCTTGGAGGAATGTC
GATGATGTGGCATCTGACTCAGCAATCCGCGTAAGGTTGACTGTTGGACCCACCCAATAGAACATGGCTAAACCTTAATA
AAGGGGGTAAAATTTTGAACAAACTTGTGTAAATAGGATATTTTGGAAGAATTTTTCTTGAACAGTTCAAAAGTGTCACA
AACTCAATCTTATAGTGTAAAAGTGGAATTTGCTCTTTAATATTTTGTGTTTGGCAGTGTAGTATATTAGAATTATTACC
TTGTTTGACTAATTAGTATTTGCCTGTAATTTATTTCCTATTTATATCTACATATTAATACAGGATTTAGAAGATAAGTT
TCAATTTTGCAGTTCAACTATGATAAATCAGCCTATTTGATTATGTGGCAGTAGCCCTGCACATAAAGCTATGATGTTAT
TTTTTCCGCAAATGGTA
>chr1A_1
ATATGTCTTAGATATCTGAATAGCCACTTGGTGAATCTCGTAAGATAATAAGTTATTAATATACATCCTAATTTATCCCT
TTTATCGGAATCTGAATAAATAAGTAGTACTATGTAAACAAATAGTCGCATTGGTGACATAAGATCCGAAAATAATGTCC
TCCCAACTCTGACAAAACAAAGAGTCATCATTCCGTGACCGATACGACATCTAAATTAAAGCGAATGTTATCTTCTCTTG
TGCTATCCATGC--------------GATAACACTTTGTTGCATATATGCATCTTTTGATATCT---CTGGCAATCAATG
ATCACGTTAATGCAATGACTAAAACTGAACCGGAAAACATGCGAAGAAGTAAGCATCTCCTAAAATGCACACCAGAATTA
TATTTAAGCGTCGAGAGCATATCTCTTCACCGAAAGAAGACAATGTTGCGTTACTTTCGATGTCTTCTCTCGCAAGCAAA
G-TAATGCGATGAGCAAGACTGGACC-AAAAACACGCTAAGAAGCAAAGCATCTTCTAAAATTGCGCGGCATAGTTATCT
CTTCAATGTCGAGAGATTATCTCTTCATCAATAGAAGGCAATAGTATCTTCCTTTTTT--CTCTCTATGCATCAATTATT
AAAAATTCTATCATGGCTGAATGAACTG----AGTGATTGGAGCACTGTTAGATGTCAAGAGAAATATCTCATTTTACTT
TCCATGAGAAGAACCATTCACTACTTGCTAGAAGCTTCCATTTCCCAATTGGGCGTTGACATTGCCCACTAACAAGTATA
TTAACAAAGCCATGTATCTTTCCCTCAAAAAAGAAAAGG-AAAAAAGAAGAAGAACTAAGGTCAACTGTCCTGATATTTG
AACAGCCGGCCGGTCAACTTTTGAGTAAAATAACACCCATAATCAAACCCCCCAGCTCTGACTTTTCAAATGTCAACCCA
CACACCCAACCCCCTCCCTATATATACATCCCCGCACCAGGAATCCTCAAATCTTGTCGAAG------------------
----------------------------------------------------------------------CACCATTCAG
TCAGAGCATCCCTCCTCTTCCGCAATTTCGCGCCTCAAAGCTTGTTCTAGACGCTTCTAGAATCTAGGCCGCGGCATGGG
CAACGGCCTCTCCCCTTGCCTGCGCGCCCCGGCCGTGCACGGCAAGGGAGCGGAGGCGAGGCTGGTGTTCTGGGGCGGGC
AGACGAGGCTCGCCGCAGCTTCCGGCGGGCGGTTCACCACGGCAGGCGACGTCACGGCGGAGGCCCCCGACCACCTCGTC
TGCTCCGGCGACTCCTTCTTCATCGGCCTCCCGATCCCGGCGCTGCCGCCGGGCGAGGAGCTGCTGGCGGGGCGGACCTA
CTTCGTGCTCCCCGCGGCCCGGTTCTCCAGCTGCCAGGCGCTCACCGCGGCCTCGCTCGCGTCGCTGTCGCCGGCCCCGA
CCAAGGTGTCCCTCGCCGGCGAGTCGTCCCCGTTCGAGTACGTCACCGGCGCCGACGGCATGGCGCTCATCAGGGTCCTC
CCGGAGTTCATCGAAAAGGTGATCACGTCCGACGGTGGCGGCGACAAGAAGTGCGGCGCGGCGGCGCCGGAACAGCTGTG
CAGCACGCCGGAGCTGAGGAAGCACTACATGCAGCTGGTGGGGGCGAGGCAGCAGCGGCCGTGGTCGCCGGGGCTCGAGA
CGATATCGGAGGCCAGGAAGGGAAGAAGGATGCCGACATGCCGTCGTCGGTGAGGCTGGCCGG----------AATTCAA
GATAACATTAGCAGCCGCGCGTGCATGGATTGCCAGATGTGGTGTCTTCTTTTTTATTGGGCTCTCCATCAAGAGAGATG
GAGTTTAGTGTTTCAGTCTCGCTTAATTGTTCATACTAGAGGAAGAGAGGCAAGCGTGCAAGATAGTTCAGAAGGAGATG
GATAG------------------TTCTAGTTCAC-------------------AAAAATTGGATGCAAATGAATGAATGA
GT-TGACATTGATACTTTGCTGCAGTTCATCATAATTCCAT-GATTTGATCTCCGGCTGGTCCAGCTGGATCATAAAAAT
GAAATTAGAGGACTCAAATTCCGAGTTCCTTTTTCTAATGTCGATG-GTACTAATAAGTTCCAAATGACCTGTCTGGATT
TTTGTATTC-TATTATTTTACTGAAGTTAAGTTGAACATCGAATCTAAACAATTTTCAAAGAACACCCCCTGAATATCAT
GTGCTCCTGGAGCACCTAAGTTCAGGTGCTCTAGCGCGATCTCGGCCCTTGAATGTAGATCAAATGATCAAATGAAGAGT
TACTGGACCTATGTGTAATCACGGGACTCCTTGGGGATTTTCTGCAAATTCGCATGAGCTCTCCCTGCCGTCATGGGATC
TAGATCCAAGGGCCGGGCTCCTTCTGTAGCACCTGAACTTAGGTGCTCTGGGAGCACAAGATATTTTCCCCTAAGACCAA
GCCTGAATATAAAGAATCTTGAAAGAACACCCCTTAAAACCAGGCTTGATTGGCGCGCCAAAAGAAAAGCGTCCTTACAT
TATTTAAGATCGAGTGAATTCCGCGCTTTTATGTTCGGAAGATGCCGCTTGTTGCCTCACACACGTCTTGGAGGAATGTC
GATGATGTGGCATCTGCTTCAGCAATCCGCATGAGATTGACTATTGGCCCCACCCAATGAAGATGTCAAAATCATA---A
AAGGGGGTAAAAATTGGAACAAACTTGTGTAAATAGGATATTTTGGAAGAATTTTTCTTGAATAGTTCAAAGTT-TCACA
AACTCAATCTTATAGTGTAAAAGTGGAATTCGCTCATTAATATTTTGTGTTTGGCAGTGCAGTATATTAGA---ATTACC
TTGTTTGACTAAGCAGTATTTG------------TTCCTATTTATATCTACATATCAATACAAGATTTAGAAAATAAATT
TCAATTTTGCAATTCAACTATGATAAATCAACCTATTTGATTACATGGC-GTAGCCCTGCACACAAAACTATGATGTTAT
TGTTTCCGCAAATG---
>chr1B_1
ATATGTCTTAGATATCTGAATAGCCACTTGGTGAATCTCGTAAGATAATAAGTTATTAATATACATCCTAATTTCTCCCT
TTTATCATAATCTAAATAAATAAGTAGTACTATATAAACAAATAGTCGCATTGGTGACATAAGATCCCAAAATAATGTCC
TCCCAACTCTGACAAAACAAAGAGTCATCATTCCGTGACCGATGCGACATCTAAATTAAAGCGAAGGTTATCTTCTCTTG
CGCTATCCATGCCATCTAGAGATGACGATAACACTTTGTTGTAGATATGTATCTTTTGATATCTTCTCTGGCAATCAATG
ATCACGTTAATGCAATGACTAAAACTGAACCGGAAAACATGCGAAGAAGTAAGCATCTCCTAAAATGCACGCCACAATTA
TCTTTAGGCGCCGAGAGCATATCTCGTCACCAGAAGAAGACAATGTTACGTTACTTTGGATGTCTTCTCTCGCAAGCAAA
GGTAATGCGATGAGCAAAACTGGACCGAAAAACACGCTAAGAAGCAAAGCATCTTCTAAAATTGCGCGGCATAGTTATCT
CTTCAATGTCGAGAGATTATCTCTTCATCGATAGAAGGCAATATTATCTTCCTTTTTTT-CTCTCTATGCATCAATTATT
AAAAATTCTATCATGGTTGAATGAACTAAGTAAGTGACTGGAGCACTGTTAGATGTCAAAAGAAATATCTCATTTTACTT
TCCATGAGAAGAACCATTCACTAATCGCTAGAAGCTTCCATTTCCCAATTGGGCGTTGACATTGCCCACTAAC-----TA
TTAACAAAGCCATCTATCTTTCCCTCAAAAAAGAAAAAAAAAAGAAAAAGAAAAACTAAGGTCAACTGTCCTGATATTTG
AACAGCCGGCCAGTCAACTTTTGAGTAAAATAACACCCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATTCAG
TCAGAGCATCCCTCCTCTTCCGCAATTTCGCACCTCAAAGCTTGTTCTAGACGCTTCTAGAATCTAGACCGCGGCATGGG
CAACGGCCTCTCCCCTTGCTTGCGCGCCCCGGCCGTGCACGGCAAGGGAGCGGAGGCGAGGCTGGTGTTCTGGGGCGGGC
AGACGAGGCTCGCCGCAGCTTCTGGCGGGCGGTTCACCACGGCCGGCGACGTCACGGCGGAGGCCCCCGATCACCTCGTC
TGCTCCGGCGACTCCTTCTTCATCGGCCTCCCGATCCCGGCGCTGCCGCCGGGCGAGGAGCTGCAGGCGGGGAGGACCTA
CTTCGTGCTCCCCGCGGCCCGGTTCTCCAGCTGCCAGGCGCTCACCGCGGCCTCGCTCGCGTCGCTGTCGCCGGCCCCGA
CCAAGGTGTCCCTCGCCGGCGAGTCGTCCCCGTTCGAGTACGTCACGGGCGCCGACGGCATGGCGCTCATCAGGGTCCTC
CCGGAGTTCATCGAGAAGGTGATCACGTCCGACGGTGGCGGCGAGAAGAAGTGCGGCGCGGCGGCGCCGGAACAGCTGTG
CAGCACGCCGGAGCTGAGGAAGCACTACATGCAGCTGGTGGGGGCGAGGCAGCAGCGGCCGTGGTCGCCGGGGCTCGAGA
CGATATCGGAGGCCAGGAAAGGGAGAAGGATGCCGACATGCCGTCGTCGGTGAGGCTGGTCGGAG----------TTCAA
GATAACATTAGCAGCCGCGCGTGCATGGATAGCCAGGTGTGGTGTCTTCTTTTTTATTGGGCTCTCCATCAAGAGAGA-G
GAGTCTAGTGTTTCAGTCTCGCTTAATTGTTCATACTAGCGGAAAAGAGGCAAGAATGCAAGATAGTTTAGAAGGAGATG
GGTACAAAAAAAATCTGATTTAGTTCTAGTTCATTCAGTTTTGTGTTAGACCAAAATATTGGATGCAGTTGAATGAATGA
GTTTCACATTGATACTTTGCTGCAGTTCATCATAATTCCATTGGTCTGATCTCCTGCTGGTCCAGCTGGATCATAAAAAT
GAAACTAGAGGGCTCAAATTCCGTATTCCTTTTTTCTAATATCGACCGTACCAATAAGTTCCAAATGACCTGTCTGAATT
TTTGTATTC-TATTATTTTACTGAAGCTAAGTTCAACATCGAATCTAAAGAATCTTGAAAGAACACCCCTTGAATATCAT
GAGCTCTCGGAGCACCCAAGTTCAGGTGCTCTAGCGCAAGCTCGGCCTTTGAATGTAGATCGAACGATCAGATGAGGAGT
TACTGGAACTATGTGTAATTACGGGACTCCTTGGGGGTTGTCTGCAAATTCATGTGAGCTCTCCCTACCACCATGGGATG
TGGATCCAACGGCCGAGCTTCTTCTGTAGCACCTGAACTTAGGTGCTCTGAGAGCATAGGATATTT--------------
-----------------------------CCCCCTAAGACCAGGCTTGATTGGCGCGTCAGAAGAAAAACGCCCTTACAT
TATTTAAGATCAAGTGAATTCCGCAC--TTATGTTCGAAAGATGCGGCTTGTTGCATTATACGCGGCTTGGGGGAATGTC
GATGATGTGGCATCCAACTCAGCAATCCGCGTAAGATTGACTGTTTGCCCCACCCAATAGAACATGGGTAAACCTTAATA
AAGGGGTAAAAAAATGGAACAAACTTCTGTAAATAGGATATTCTGAAAGAATTTTTCTTGAATAGTTCAAATGTGTCACA
AACTCAATCTTATAGTGTAAAAGTGGAATTTGCTCTTGAATATTTTGGAATTTGCTCT--------TTAGAATTATTACC
TAGTTTGACTAATTAGTATTTGCCTATAATTTATTTCCAATTTATATCTACTTATTAATACAGGATTTAGAAAATAAGTT
TCAATTTTGCAGTTCAATTATGATAAATCGGCCTATTTGATTATGCGGCAGTAGCCATGCACACAAAGCTATGATGTTAT
TTTTTCCGCAAATGGTA
>SNPs
--------S----------------S------S-----S------------------------S--------------S-
-S----S-------S----------------------------S------------------------------------
-----------------------S----------------------------------------S---------------
---S----------------------------------------------------------------------------
----S----------------------------------S-------------S--------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------S---------------
-----------------------------------------------------------S--------------------
---S--------------------------------------------------------S-------------------
----------S----------------------------------S--S-------------------------------
--------------------------------------------------------------------------------
---------------------------------S--------------------S-------------------------
---------------------------------S----------------------------------------------
--------------------------------------------------------------------------------
---------------S----------------------------------------------------------------
-----------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------S-------------------------S---------------
--------------------------------------------------------------------------------
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------SSSSSSSSSS-------
-------S--------S-------S-S--------S-S------S-----------------------------------
---------S----------------------------------------------------------------------
-------------------------S----------------S-----S-------------------------------
--------------------------------------------------------------------------------
-----------------------------S---------S----S-----------------------S-----------
--------SS------------------------------S------------S---------S----------------
----------------------------------------------------S------------S--------------
---------------S----------------S-----------------------------------S-----------
--------------------------S-S---------------------------S-----------------------
-----------------------------------------S-S------------------------------------
-------S--------------------S-----------------------------S---------------------
-----------------------------------S-----------S-------------------S------------
------------S--S----------------------------------------------S--------S--------
-----------------------------------------------------------S--------------------
-------------------------S----------------------------------------------S-------
---------------------------------------------------------------S----------------
-----------------
>forward_374
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-------------------------------GGAAAACACGCGAAGAAGTAAGT--------------------------
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>reverse_1878
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-------------------------------------AGTGGTGGCCATCAAGAGAG-----------------------
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-----------------
>forward_1136
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----------------------------------------------------------------------------TCAG
TCAGAGCATCCCTCCC----------------------------------------------------------------
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>reverse_2604
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-------------------------------------------ACTTGATTGGCGCGTCAAAA-----------------
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