>input_sequence_64185
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---------------------------------------------------------------------ACAAGGCAAAG
GGCAGACAAAACCCCACCGCTTCCGTCCCCCTCCGTCCTCGCAGCCCCCA---TGGCCATGTGGCCTTCTTGGGTGAAGA
CGCGCGCTTCCAGGTCCAAATCCTCCCCATCCACCGCGCTCGTCGCCGCTGCCGCCACCACCCGGCGATTCTCCATCGCC
TCCCACTCCCCCTCCCTCAAGGACATCCCGTCGCTGGTCCGCCCGGAGCAACCCCGCCCGCCGCGCGTCTTCCACCGCCT
CCGCGTCGCGGCCTCCGCCCTCCGCCTCCTCCGCGCCCTCAAGTCGGCCTCGGCGCACACCACCGCCCGGGAGCCAGAGG
TGCACGTGGTGCTCTACTCCACCTCCCTCCGCGTCGTCCGCCGCACCTACGAGGACTGCTACACCGTGCGCTTCATCCTG
CGGGGGATCGGCGCCACCGTCGACGAGCGCGACCTGGCCGTGGACACCGCCTTCGGCGCGGAGTTCGCCGCGCTCCTGCC
GCCCCGCCTGGGCCTGGCCCTCCCGCAGGTCTTCGTGGACGGCCGCCACCTCGGGGGCGTCGAGGAGGTCCAGCGCCTCC
ACGAGTGCGGCGAGCTCAACCGCATCGTCGTGGCCCCGG---TATCCCCCGGCCCGGCCCATCCCCCCTGCGGCCGCTGC
GGCGACGAGCGCCACGTGCCCTGCGGCAGCTGCGACGGGAGCCGGAAGAAGCAGAGCGACGACGGGAGCCGCAAGAAGCA
GAG---CGACGAGGACGGCGTCCTCACCTGCGCCGCCTGCAACGCGAGCGGCCTCGTCCGGTGCCCGGACTGCCTCTTCC
CGGCGGCCGCCTGACTGAGATCCAGTCAGTATTCGGCTGTCCAGTAACTGAAACTCTTTACTACTGGCAGCAGCACGACA
GCTACTCCTCATCGACGACAGCTGCTCAGGTCAA-GAGACCACCTGCATGCCCAGCTCGATATACTCTATTTAGTTATTG
CTAGTTAAA-----------------------------------------------------------------------
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>chr1B_1_TraesCS1B01G305600
GAACATGTCCATACAAACAAAAAATCAAGCCATAACTAAGGAAAACTCAATTCACAGATCAAGAAAGTAGGGAAGTACAT
GCAAC--AACCTTCCTTTGGTCACATGGCCGATTGAAG--AAACCTCCACACAAAAAATCGCCCAATTCCTCTGCTTCCA
TTGCAACCAAAAGATGAAAGAAGAAGAGTCTCGGAAAAATGATGGTCAGTAAACTGAACACCGGGTTTATTTACACGACT
CAAAGGCACGATTACCAAACAAAGAAAAGAGAAACCAATCCAAAGTCCGCAAAATTGAAGTCCAAGCCCCGGACAGAGAA
AGCCCACAAAAGACACGTTGAATAGGCCACAACAAACTGAAAAAGGGTCGTCACAATTCAATCAAAGGTTTATTTTCCTT
TGATGACGACGTGTCCATGGTAAGGCTTCGGAAGCAAACACGATAATCATGTGGTGC-----------------AAACCA
ATAATTGGAATAAAATTTAATTTT-CCAACTAAGGAAGGTAATGACTCTTGACTATTTTACCCTCCGCGTAATATCGAAA
TTCGAAAGTCTTTATGCGCATCCAAATGTGATCACCGCATTAACGCTCCATTCACGTAGATAGTGGGTACATTTTAATGG
TGACGGAGATTTCGAGGTCTCCTTCCAATACTAGATTTGAAATTATTTGGATATAGCGCACTCAAGTTTAATGCGTTTCT
CGGGTTATCGAAGCGGGGATGTTTGACTTGTCATCGCGATCTCACAAAATCTAAGCACGCTTGCCTATTTTGTGTTATAG
TACAAAATACATGTAAAATATAAAATATATACTTGTCAAGAAAAAATTGTGTACCTTATCGAATTCTTTTGTTATGGTAC
ATGCAACAAAAAAAATTAAGGTTTGTGAGGTGGTGTTCCCTAAAATTCTTGGAAAATCCCTAGAAAAAAAGTGACATGTT
CAGATGGGCTGGGTTTTCAAATCACGCCCCATATAATCCACCCCAAACGAACGAG-------GCCGGCCACAAGGCAAAG
GGCAGACAAAACCCCACCGCTTCCGTCCCCCTCCGTCCTCGCAGCCCCCA---TGGCCATGTGGCCTTCTTGGGTGAAGA
CGCGCGCTTCCAGGTCCAAATCCTCCCCATCCACCGCGCTCGTCGCCGCTGCCGCCACCACCCGGCGATTCTCCATCGCC
TCCCACTCCCCCTCCCTCAAGGACATCCCGTCGCTGGTCCGCCCGGAGCAACCCCGCCCGCCGCGCGTCTTCCACCGCCT
CCGCGTCGCGGCCTCCGCCCTCCGCCTCCTCCGCGCCCTCAAGTCGGCCTCGGCGCACACCACCGCCCGGGAGCCAGAGG
TGCACGTGGTGCTCTACTCCACCTCCCTCCGCGTCGTCCGCCGCACCTACGAGGACTGCTACACCGTGCGCTTCATCCTG
CGGGGGATCGGCGCCACCGTCGACGAGCGCGACCTGGCCGTGGACACCGCCTTCGGCGCGGAGTTCGCCGCGCTCCTGCC
GCCCCGCCTGGGCCTGGCCCTCCCGCAGGTCTTCGTGGACGGCCGCCACCTCGGGGGCGTCGAGGAGGTCCAGCGCCTCC
ACGAGTGCGGCGAGCTCAACCGCATCGTCGTGGCCCCGG---TATCCCCCGGCCCGGCCCATCCCCCCTGCGGCCGCTGC
GGCGACGAGCGCCACGTGCCCTGCGGCAGCTGCGACGGGAGCCGGAAGAAGCAGAGCGACGACGGGAGCCGCAAGAAGCA
GAG---CGACGAGGACGGCGTCCTCACCTGCGCCGCCTGCAACGCGAGCGGCCTCGTCCGGTGCCCGGACTGCCTCTTCC
CGGCGGCCGCCTGACTGAGATCCAGTCAGTATTCGGCTGTCCAGTAACTGAAACTCTTTACTACTGGCAGCAGCACGACA
GCTACTCCTCATCGACGACAGCTGCTCAGGTCAA-GAGACCACCTGCATGCCCAGCTCGATATACTCTATTTAGTTATTG
CTAGTTAAAGTAGTTCAAACTTCAAAGCCGGCTACACCATTGGCTTAGCTCGGGTCTGGGCAGGAGTTCTTTTTTAAAAT
ATAATTATAATTTAGCTTCGGCAT---TACGACTTCCAGAAGATTTGCTGCTCATTTCCC-CCTCTTGGTTACTCCAATC
CTGGACGAACCAGACGAGAATCATAATACAATTGTACTACTACTACTGCTATACTTGATCCCTCTGGTTGGTCTCTGTAC
GTGTCCCTGTACGTGCGTTTCAAATCTTTTTAATTCTGAATCAATGGCACGGGCTTCGCGTGCTGCTTGCGTGCCAATGT
TTACCGGTGGGAGGCTCGTTGGTGTGTTTGCGCACGCGACACGG-CGATATACACATGCAGCTAGCGCATGCTCATCACA
GTTGTGGCGTGAAGGGGAGAGCATCCTCTGGCCGGCTCC------TATGATTGCCCGATGTTTCGTCGCGGGGTACGGCA
AACGCTCCAGGCACTGGTGTCGGCCAATCATGGCCCCTACGGGCGG-----CACG-----GCACTCGGCGCATCGGCGGG
GGGCACGGCGAGCCGAGAGATGGGTAGGTTCGACTTCGAGGGGTAGGGTGGGGTCATGGGAATTTAACGGCGCCCACATT
ATGGGTCTTTC--GTCGTGCCTTCAGCTCTCACGCGTGTATGCCGTGTGTGTACGTGTACCCGTCTGCGGCGGGAAGAGC
AAGATCAGGGCCGGGAGCGCGGTGACCGTTGGGCGGTGTGGGCTCTAGAGCGCGCGAGGGGAAAGGGAGCGGCGGCCAAC
GCGGCAGGTGCACAGTTCAGCGGTGATCGGCTCTTGTGTTCGAATGGACCGCAGCGTGCATCAGCTTGGCTGACAGCACC
GAGAGCCATCTGCGCCATGGAACGAAATGGCGCACACGCACCTGGGTCATCCTGGATCGACCCAGCACGAGCGCGCCACA
GTACTAGGCCAGCCCATTCGTTCGCTCGATCGTGCTTGCTTCGCTGGTTGTTCGCTTCGGATCTCTTTGCCT
>chr1D_1
GAACATGTCCAT----ACAAAAAA-AAAGCCATAACTAAGGAAAACTCAAATCACGGATCAAGAAAATAGGGAAGTACAT
GCAAC--AACCTTCCTTTGGTCACATGGCCGATTGAAG--AAACCTCCACACAAAAA-TCGCCCAATTCCTTTGCTTCCA
TTGCAACCAAGAGATGAAAGAAGAAGAGTATCG-AAAAATGATGGTTAGTAAACTGAACACCGGGTTTATTTACACGACT
CAAAGGCACGATTACCAAACAAAGAAAAGAGAAACCAATCCAAAGTCCGCGGGATTGAAGTCCAAGCCCCAGACAGAAAA
AGCCCACAAAAGACACGTTGAATAGGCCACAACAAACTGAAAAAGAGTCGTCACAATTCAATCAAAGGTTTATTTTCCTT
TGATGACGA-GTGTCAATGGTAAGGCTTCGGAAGCGAACACGATAATCACGTGGCGC-----------------AAACCA
ATAATTGGAATAAAATTTAATTTT-CCAGCTAAGGAAGGTAATGACTCTGGACTATTTTACCCTCCGCGTAATATCGGAA
TTCGAAAGTCTTTATGCGCATCCAAATGTGGTCACCGCATTAACGCTCCATTCATGTAGATAGTGGGTACATTTTAATGG
TGGCGGAGATTTCGAGGTCTCCTTCCAATACTAAATTTGTAATTATTTGGATATAGCGCACTCAAGTTTAATGCGTTTCT
TGGGTTATCGAAGCGGGGATGCCTGGCGTGTCATCGCGATCTCACAAAATCTAAGCACGACCGCCTATTTTGTGTTATAG
TCCAAAACACATGTAAAATATAAAATATATACTTGTCAGGAAAAAATTGTGTATCTTATCGAATTCTTTTGTGTTATGGT
-----------AAATTGAAAGTTTGTGAGGTGATGTTTCCTAAAATTCTTGGCAAATCCCT--GAAAAAAGTGACATGTT
TAAATAGGCTGGGTTTTCAAACCGCGCCCCATAAAACCCACCCCAAACGAACGAG-------GCCGGCCACAAGGCAAAG
CGCAGACAAAACCCCGCCGCTTCCGT-CCCCTCCGTCCTCGTAGCCCCCA---TGGCCATGTGGCCTTCTTGGGTGAAGA
CGCGCGCTTCCAGTTCCAAATCCTCCCCACCCACCGCGCTCGTCGCCGCTGCCGCCACCACCCGGCGCTTCTCCATCGCC
TCCCACTTCCCCTCCCTCAAGGACATCCCGTCGCTGGTCCGCCCGGAGCACCCCCGCCCGCCGCGCGTCTTCCACCGCCT
CCGCGTCGCGGCCTCCGCCCTCCGCCTCCTCCGCGCCCTCAAGTCGGCCTCGGCGCACGCCACCGCCCGGGAGCTAGAGG
TGCACGTCGTGCTCTACTCCACCTCCCTCCGCGTCGTCCGCCGCACCTACGAGGACTGCTACACCGTGCGCTTCATCCTG
CGGGGGATCGGCGCCACCGTCGACGAGCGCGACCTGGCCGTGGACAACGCCTTCGTGGCGGAGTTCGCCGCGCTCCTGCC
GCCCCGCCTGGGCCTGGCCCTCCCGCAGGTCTTCGTGGACGGCCGGCACCTCGGTGGCGTCGAGGAGGTCCAGCGCCTCC
ACGAGTGCGGCGAGCTCAACCGCATCGTCGCGGCCCCGA---TATCCCCCGGCCCGGCCCATCCCCCCTGCGGCCGCTGC
GGCGACGAGCGCCACGTGCCCTGCGGCAGCTGCGACGGGAGCCGGAAGAAGCACAGCGACGACGGGAGCGGCAAGAAACA
GAG---CGACGAGGACGGCGTCCTCACCTGCGCCGCCTGCAACGCGAGCGGCCTCGTCCGATGCCCGGACTGCCTCTTCC
CGGCGGCCGCCTGATTGAGATCCAGTCAGTACTCGGCTGTCCAGTAACTGAAACTCTTTACTACTGGCAGCAGTAGGACA
GCTACTCCTCATCGACGACAGCTGCTCAGGTCAAAGAGACCACCTGCATGCCCAGCTCGATATACTCCATTTAGTTACTA
CTAGTCAAACTAGTTCAAACTTCAAAGCTGGTTACACCATTGGCTTAGCTGGGGTCTGGACAGGAGTTTTTTTTTTTTTG
--AAATATAATTTAGCTTCGGCAT---TACAACTTTCAGAAGATTTGCTGCTCATTTCCCTCCTCTTGGTTACTCCAATC
CTGGACGAACCAGACGAGAATTATAATACAATTATACTCCTACT--------------------TGGTTGGTCTCTGTAC
------CTGTTCGTGCGTTTCAAATCTTTTTAATTCTCAATCAATGGCACGGGCTTCGCGTGCTGCTTGCGTGCCAATGT
TTACCGGTGGGAGGCTCGTTGGTGTGTTTGCGCACGCGACATACACGATATACCCATGCAGCTAGCGCATGCTCATCACA
GTTGTGGCGTGAAGGGGAGAGCTTCATCTGGCCTCTCCC-------ATGATTGCCCGATGTTTCGTCGCGGGGTACGGCA
AACGCTCCAGGCACTGGTGTCGGCCAATCATGGCTCCTACGGGCGGCACGACACG-----GCACTCGGCGCATCGGCGGA
GGGCACGGCGAGCCGAGAGATGGCTGGGTTCGACTTCGAGGGGTAGGGTGGGATCATGGGAGTTTAACGGCACCCACATG
ATGGGTC--TC--GTCGTGCCCTCAGCTCTCACGCGTGTATGCCGTGTG----CGTGTACCCGTCTGCGGCAGGAAGAGA
AG--TCAGGGCCGGGAGCGCGGTGACCGTTGGGCGGTGTGGACTCTAGAGCGCGCGAGGGGAAAGGGAGCGGCGGCCGAC
GCGGCAGGTGCACAGCTCAGCGGTGATCGGCTCTTCTGTTCGAATGGACCGCAGCGTGCATCAGCTTGGCTCACAGCACC
AAGAGCCTTCTGCGCCATGGAACGAAATGGCGCACACGCACCTGG-TCATCATGGATCGGCCCAGCACGAGCGCGCCACA
CTACTAGCCAAGCCCATTCGTTCGCTCGATCGTGCTTGCTTCACTGGT------------------------
>chr1A_1
GAACATGTCCATACAAACAAAAAA-CAAGCGATAACTAAGGAAAACTCAATTCACAGATCAAGAAAATAGGGAAGTAGAT
GCAACAAAACCTTCCTTTGGTCACATGGCCGATTGAAGTGAAACCTCCACACAAAAA-TTGCCCAATTCCCTTGCTTCCA
TTGCAACCTAGAGATGAAAAAAGAAGAGTCTAGGCAAAATGATGGTCAGTAAACTGAACACTGGGTTTATTTACACGACT
CAAAGGCACCATTACCAAACAAAGAAATGAGAAACCAATCCAAAGTCCACGGGATTGAAGTCCAAGCCCAAGACAGAAAA
AGCTCACAAAAGACACGCTGAATAGGCCACAACAAACTGAAAAAGGGTCGTCACAATTCAATCAAAGGTTTATTTTCCTT
TGATGACGACGTGTCCATGGTAAGGCTTCCGAAGCGAACACGATAATCATGTACTAATAACTCTTGACTATTTTAAACCA
ATAATTGGAATAAAATTTAATTTTTCCAGCTAAGGAAGGTAATGACTCTTGACTATTTTACCCTCCGTGTAATATCGAAA
TTCGAAAGACTTTATGCGCATCCAAATGTGGTCACCGCATTAACGCTCCATTCACATAGATAGTGGGTACATTTTAATGG
TGGCGGAGATTTCAAGGTCTCCTTCCAACACTAGATTCAAAATTATTTGGATATAGCTCACTCAAGTTTAATGCGTTTCC
CGGGTTATCGAAGCGGGGATGCTTGGTGTGTCATCGCGATCTCACAAAATCTAAGCACGGCCGCCTATTTTGTGTTACGG
TCCAAAATACATATAAAATATAGAATGTATACTTGTCAAGAAAAAATTGTGCATCTTATCTAATTCTTTTGTTATGGTAC
ATGCAACAAAAAAATTGAAAGTTTGTCAGGTGGTGTTCCCTAAAATTCTTGGAAAATCCCT--AAAAAAAGTGACATGTT
CAGATGGGCTGGGTTTTCAAATCACGCCCCATAAAACCCACCCCAAACGAACGAGGCCGGCCGCCGGCCACAAGGCAAAG
CGCACACAAAACCCCACCGCTTCCGT-CCCCTCCGTCCTCGCAGCCCCCATCATGGCTATGTGGCCTTCTTGGGTGAAGA
CGCGCGCTTCCAGGTCCAAATCCTCCCCGTCCACCGCGCTCGTCGCCGCTGCCGCCACCACCCGGCGCTTCTCCATCGCC
TCCCACTCCCCCTCCCTCAAGGACATCCCGTCGCTGGTCCGCCCGGAGCACCCCCGCCCGCCGCGCGTCTTCCACCGCCT
CCGCGTCGCGGCCTCCGCCCTCCGCCTCCTCCGCGCCCTCAAGTCGGCCTCGGCGCACGCCACCGCCCGGGAGCCAGAGG
TGCACGTGGTGCTCTACTCCACCTCCCTCCGCGTCGTCCGCCGCACCTACGAGGACTGCTACACCGTGCGCTTCATCCTG
CGGGGGATCGGCGCCACCGTCGACGAGCGCGACCTGGCCGTGGACAACGCCTTCGTGGCGGAGTTCGCCGCGCTCCTGCC
GTCCCGCCTGGGCCTGGCCCTCCCGCAGGTCTTCGTGGACGGCCGCCACCTCGGGGGCGTCGAGGAGGTCCAGCGCCTCC
ACGAGTGCGGCGAGCTCAACCGCATCGTCGCGGCCCCGACGATATCCTCCGCCCCGGCCCATCCCCCCTGCGGCCGCTGC
GGCGACGAGCGCCACGTGCCCTGCGGCAGCTGCGACGGGAGCCGGAAGAAGCACAGCGACGACGGGAGCCGCAAGAAGCA
GAGCGACGACGAGGACGGCGCCCTCACCTGCGCCGCCTGCAACGCGAGCGGCCTAGTCCGGTGCCCGGACTGCCTCTTCC
CGGCGGGCGCCTGATTGAGATCCAGTCAGTAATCGG-------GTAACTGAAACTCTTTACTACTGGCAGCAGTAGGACA
GCTACTCCTCATCGACGCCACCTGCTCAGGTCAAAGAGA------------CCAGCTCGATATACTCTATTTAGTTACTA
CTAGTCAAAGTAGTTCAAACTTCAAAGCCGGTTACACAATTGGTAC---------------------------------T
ATAATTATAATTTAGCTTCGGCATCAGTACAACTTTCAGAAGATTTGCTGCTCATTTTCCT-CTCTTGGCTACTCCAATC
CTGGACGAACCAGACGAGAATCATAATACAATTATACTCCTACT--------------------TGGTTGGACTCTGTAC
GTGCGTGCGTTTCAA----TCAAATCTTTTTAATTCTCAATCAATGGCACGGGCTTCGCGTGCAGCTTGCGTGCCAATGT
TTACCGGTGGGAGACTCGTTGGTGTGTTTGCGCACGCGACATGCACGATATACCCATGCGGCTAGCGCATGCTCATCACA
GTTGTGGCGTGAAAGGGAGAGCATCATCTATTCATCTGTCTCCTATATGATTGCCCGATGTTTCGTCGCGGGGTACGGCA
AACGCTCCAGGCAC-GGTGTCGGCCAATCATGGCTCCTACGGGCGGCACGGCACGGCACAGCACTCGGCGCATCGGCGAA
CGGCACGGCGAACCGGGAGATGGGTGGGTTCCACTTCGAGGGGTAGGGTTGGATCATGGGAATTTAACGGCGCCCACATG
ACGGGTC--TCTCGTCGCGCCTTCAGCTCTCACGCGTGTATGCCGTGTG----CGTGTACCCGTCCGCGGCAGGAAGAGC
AACATCAGGGCCGGGAGCGCGGTGACCGTTGGTCGGTGTGGACTCTAGAGCGGGCGACGGGAAAGGGAGCGGCGGCCGTC
GCGGCAGGTGCACAGCTCAGCGGTGATCGGCTCTTCTGTTCGAATGGACCGCAGCGTGCATCAGCTTGGCTCACAGCACC
GAGAGCCTTCTGCAGCATGGA---AAATGGCGCACACGCACCTGG-TCATCCTGGATCGACCCAGCACGAGCGCGCCACA
GTACTAGTCCAGCCCATTCGTTCGCTCGATCGTGCTTGCTTCGCTGG-------------------------
>SNPs
------------------------S-----------------------------------------S-------------
---------------------------------------------------------S-------------S--------
----------S---------------------------------------------------------------------
--------------------------------------------------SSS-----------------S------S--
--------------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
----------------------------S---------------------------------------------------
------------------------------S-------------------------------------------------
--S-----------------------------------------------------------------------------
---------------------S---S-S-------------------------------SSS------------------
-S---------------------------------------------------S--------------------------
--------------S-S--S-----------------------------------------SS-----------------
---------------------------------S--S-------------------------------------------
S-------------------------S-----------------------------------------------------
-------------------------------------------------------------------S------------
--------------------------------------------------S-----------------------------
----------------------------------------------------------S---------------------
--------------------------------------------------------------------------------
----------------------------------------------S--------SS-----------------------
--------------------------------------------------------------------------------
------------------------------S-------S-----------------------------------------
-----------------------------------------------------S--------------------------
--------------------------------------------------------------------------------
--------------S----------------S-----------------------------------------S-S----
-----------------------------------------------------------------------------S-S
-----S-------------------------S------------------S--------S--------S------SSSS-
------------------------------S----S--------------------------------------------
---------------------------------S----S-----SSSSSSSSSSSSSSSSSSSS----------------
---SSS----S--------------------------S------------------------------------------
-----------------------------------------S-S---------S--------------------------
-------------------------S-------SS---------------------------------------------
----------------------------------S--------------------------------------------S
-------------------------S--------------------------S--------------------------S
-------SS----------------------------------------SSSS------------------S--------
--S--------------------------------------S-----------------------------------S--
---------------S-------------------S-----------------------------------S--------
-------S-------------------------------------S----------------------------------
-------S----------------------------------------SSSSSSSSSSSSSSSSSSSSSSSS
>forward_742
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--GGTTATCGAAGCGGGGATGT----------------------------------------------------------
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>reverse_2278
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-------------------------------------GAATCAATGGCACGGGCTTC-----------------------
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