>input_sequence_64099
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-----------------------------------------ATGGAAAGCAATGTAGACCTAGAGGCGTCTGATTTACAG
GTCACAGATAACTGGGAGTTCGCATCCGCCGTAGGCCCAGGCGCAGTTACATCTAGGATTTCAGTGCAAAAGCCGTGCAA
CATATTCTCCCAGTTTGGACAGTTCAAGAGGAAGTTGATAGCAGAGATTGGTTTTGAAGGCGTGCTGTCACTCAGGTCCC
TGCCGAAGCTGAACCTGAAATTCAGTTCGTTCCTCATGGAGAGGGTGGATGCAGACACATGCGTAATCACCATAGATGAA
GGGCGTTCAATCAAGTTCACAGCAGCTGATGTCAACAATGTTTTTGGGCTTCCAGTAGGTGGGAAAAGGATATCAACATA
TCCATGTGACTTGTCGGAGGCATGCATTGAGTACAAGAAATTTGCAGAAGAGCTTAGTGACAAGGGCACACATAACCTGA
AAGCTGCAGAGGCCATACTATTGAAAGACATCCAGGAAGACTCGCCTAGGGTCGCCATAGAGATGTTTAAAATTGCCGCT
GTTATTTTTATTTTTGGGCATTTGCTATGTCCTTCGTCGAAGAATGACTACACCAGCGTAGACTACTGGGGTGCACTGAA
CACAACTTTAGAGATTAGTCAATTTGATTGGTGTGAATTTGTCATCGAGCACCTGTTAAGCGCTGTCCGAAAGCTGAAGA
CTGATCTTCAGACACGGCACTCAACTATACATCTTGTGG-TTGCCATCTGTTCCTACAGGTGAAATGAAATGTGTCCTAT
TTTTCTTGTTTGTTGCAAAAAAAAATTCTGAAAATGACATGCATTCTGTCGTGATATACCATAGGTCCATGTTGATAAGA
GAAGTTCTGAAATTTTTCTTATCACCCCTCATCAGGTTTTTGTGCTCGACAATTTGGACCTGGGTCAGCAAACTCCTCGA
GACCCTTCGACGCCCAGGGTCTGTGTTTTCGATTATGACATCACCCGCAAGATGA-------------------------
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>chr5A_1_TraesCS5A01G154400
TCCAAGGTTCGAGCCAAGGTATGGCTGGACATGCTACGCAGACGCAGCCGGAGCAGGCACCCGAGATCGTCAGGCAGCAG
CGGACTGAACAAGCACAGGCCAGGGGAGGCCGCGACTGTCTCTTCATCTGCCTCATGGTGATCAACATGATCTTCACCCT
GACCATCCTTTCACGGGTGTGATGAGCTACTGTCAAGCACCCTATCCGTTCTAATCGTAGACATATGTTTTCCAATTATC
CACTGTAATCCTTTCCCTCTAGTTCTAGTTGCGAGTCACTGAGCCTGTTGATTAGGTCGTTAATGGGTCATCGAGTTAGC
ATGCAAAAGCTTGTCAGTGTATGCTTCAAGTTTATGTTAATTAATAATCAGCTCATCAATGTATGATTATCTGCATCATC
GGATGGACACGCTAATCAGTCTGGCCAGCGGAAAAATGTTGACATAGTCAGAGAGAGGCCCCACTTTTTGCTTGACTGGT
GATATCTACTTGCTGGACGTAGTAAATTGTGTTGACTAGTCAGGTCGGGTGTTAACTCTGTCGCCAACTGTGCACACAAC
CACCATCACCCAACAGTAAATAGAACGCGCGCTGAAACTAGAAGGGAGCGGTGCGAGCCATCTCCCCTGCTTTTCTGCCT
CGCTCACCGCACGCCATCTCGGCATCTCCTTCCTCCCCC-ACCAGCGCTGAAGCTTGCATCGTATCCATGGCACCAGCCA
CTTAAGCAAACGGGTTCAGCCCTGCGAGTCGAGGATTCAAGCAAGAAGAGGAGGCAGTGAGGATTCAAGCAAGAACAGGA
GGCAGGTATGTAAAGGCAAATCCAACTCTCTGTATCACACTCGCAGTTGCAAAAACTATTCATCTATAGCAGTAGGGATC
CATTGAAATGCTCGAGTTTAGTACGGATTATTATAGAAAGCCATTTGATTTACCAGATCCATCTTGTATTTTCTGTTCAA
TCTGTAGCGCGCACCTCATCACATCGGCGTCTTCGGCCGGCATGGAAAGCAATGTAGACCTAGAGGCGTCTGATTTACAG
GTCACAGATAACTGGGAGTTCGCATCCGCCGTAGGCCCAGGCGCAGTTACATCTAGGATTTCAGTGCAAAAGCCGTGCAA
CATATTCTCCCAGTTTGGACAGTTCAAGAGGAAGTTGATAGCAGAGATTGGTTTTGAAGGCGTGCTGTCACTCAGGTCCC
TGCCGAAGCTGAACCTGAAATTCAGTTCGTTCCTCATGGAGAGGGTGGATGCAGACACATGCGTAATCACCATAGATGAA
GGGCGTTCAATCAAGTTCACAGCAGCTGATGTCAACAATGTTTTTGGGCTTCCAGTAGGTGGGAAAAGGATATCAACATA
TCCATGTGACTTGTCGGAGGCATGCATTGAGTACAAGAAATTTGCAGAAGAGCTTAGTGACAAGGGCACACATAACCTGA
AAGCTGCAGAGGCCATACTATTGAAAGACATCCAGGAAGACTCGCCTAGGGTCGCCATAGAGATGTTTAAAATTGCCGCT
GTTATTTTTATTTTTGGGCATTTGCTATGTCCTTCGTCGAAGAATGACTACACCAGCGTAGACTACTGGGGTGCACTGAA
CACAACTTTAGAGATTAGTCAATTTGATTGGTGTGAATTTGTCATCGAGCACCTGTTAAGCGCTGTCCGAAAGCTGAAGA
CTGATCTTCAGACACGGCACTCAACTATACATCTTGTGG-TTGCCATCTGTTCCTACAGGTGAAATGAAATGTGTCCTAT
TTTTCTTGTTTGTTGCAAAAAAAAATTCTGAAAATGACATGCATTCTGTCGTGATATACCATAGGTCCATGTTGATAAGA
GAAGTTCTGAAATTTTTCTTATCACCCCTCATCAGGTTTTTGTGCTCGACAATTTGGACCTGGGTCAGCAAACTCCTCGA
GACCCTTCGACGCCCAGGGTCTGTGTTTTCGATTATGACATCACCCGCAAGATGATAGAGGCGCTCAGTTGCAGTCAAGG
TGGTGAACCAGCATTTTCAATCTCCAGGGTATGCCTGGGGACTCGCAATTTTTTTTCTATTTTTTTTCCAAGACGATAGG
GCCGCTCAGTTGTTTTTCGAGTCATCCTTACTATGCAATCGATGACCACTTTTCTTAACAACAGGCTTTCAGGTCTGACG
ATGTCGGTTACTCTCACATTTACATAATGCGGAATCCCTCACCAAACCGGTTGCTCGGTCAGAAGAGCCACATGTTCAGG
ACACCAGAATCAAATGCTACAAGGTACAATTCAAGCGCGACACCCAACTCAAATAGGCGGGGCACAGCTAGGAAAGGCCC
TGCCGACTTTGCAAACCATCTTCGTGCCCGGTATCCGAGCCTTGTAAGTAATCATTTTTCGCACCCTCATCCCAACATCC
AACATAATGACCAGCAAATCATTTTCAGTCACTACTTTTTT-AACTGCCTGTCCATGTTTTATTCTGCAGTTCTCACACC
CAGTAGCAATTTATCTGAGAGAACACAATGCCCGTGTCATGCGCAACATGTTCGAATTGCAGCAGGCATCACACGACGAG
ATGGTTGCTTTTGCAGACAAGATAATGATTAGTTTAGCCGATGGGTTTTTACCGAGTAACTTCAACACCCCTGGGCATGA
AACTCATGCATTGCGAGACATTGCAATTGCTGGTATTGACCCCTGTACTGTTACGTTGTTTTTAGCCTTTTTCGGCCCAT
TAACCGTGTTAACCAGTTAGCCTTTTTAAAAATATAGATTATTCTACCCGTTAACTGTGTTAACCAGTTTCATGTTGCCC
AAATGATCATATAGGTGCATCACATACCCCTATCAATGTCCCACCAATCCGTTCTTTGGGTGCTAGCTTGCCGCCTGCAG
TACATGCGGATGGTAAGTGTTTTGTTTTTTTTAGGTTTCCATACAGTGGTTTAGTACCAACACATTTTTTGAGCTCTAGT
AAGTGTTCCTGACATC
>chr1A_1
TCCAAGGTTCGAGCCAAGGCATGGCTGGACATGCTACGCAGACGCAGCCGGAGCAGGCACCCGAGATCGTCAGGCAGCCG
CGGACTGAGCAAGCACAGGCCAGGGGAGGCCGCGACTGGCTCGTTATCTGCCTCATGGTGATCAACATGATCTTCACCCT
GACCATCCTTTCACGGGTGTGATGAGCTACTATCAAGCACGCTATCCGTTCTAATCGTAGACATATGTTTTCCAATTATC
CACTGTAATCCTTTCCCTCTAGTTCTAGTTGCGAGTCACTGAGCCTCTTGATTAGGTCGTTAATGGGTCATCGAGTTAGC
ATGCAAAAGCTTGTCAGTGTATGCTTCAAGTTTATGTTTATTAATAACCAGCTCATCAATGTATGATTATATGCATCATC
GGATGGACACGCTAATCAGTCTAGCCAGCGTAAAAATGTTGACATAGTCAGAGAGAGGCCCCACTTTTTGCTTGATTGGT
GATATCTACTTGCTGGACGTAGTAAATTGTGTTGACTAGTCAGGTCGGGTGTTAACTCTGTCGCCAACTGTGCACACAAC
CACCATCACCTAGCAGTAAATAGAACGCGTGCTAAAACTAGAAGGGAGCGGTGCGAGCCATCTCCCCTGCTTTTCTGCCT
CACTCACCGCACACCATCTCGGCATCTCCTTCCTCCCCCTACCAGCGCTGAAGCTTGCATTGTATCCATGGCACCAGCCA
CTTAAGCAAACGGGTTCAGCCCTGCAAGTCGAGGATTCAAGCAAGAAGAGGAGGCAGCAAGGATTCAAGCAAGAACAGGA
GGCAGGTATGTAAAGGAAAATCCAACTCTCTGTATCACACTCGCATTTGCAAAAAATATTCATCTGTAGCAGTAGGGATC
CATTGAAATGCTCGAGTTTAGTACAGATTATTATAGAAAGCCATTTGATTTACCAGATCCATCTTGTATCTTCTGTTCAA
TCTGTAGTGCGCACCTCATCACATCGGTGTCGTTGGCCGGCATGGAAAGCAATGTAGACCTAGAGGCGTCTGATTTACAG
GTCACAGATAACTGGGAGTTCGCATCCGCCGTAGGCCCAGGCGTAGTTACATCTAGGATTTCAGTCCAAAAGCTGTGCAA
CATATTCTCCCAGTTTGGACAGTTCAAGAGGAAGTTGATAGCAGAGATTGGTT-TGAAGGCGTGCTGTCACTCAGGTCCC
TGCCGAAGCTGAACCTGAAATTCAGTTCGTTCCTCATGGAGAGGGTGGATGCAGACACATGCGTAATCACCATAGATGAA
GGGCGTTCAATCAAGTTCACAGCAGCTGATGTCAACAATGTTTTTGGGTTTCCAATAGGTGGGAAAAGGATATCATCATA
TCCATGTGACTTGTCGGAGGCATGCATTGAGTACAAGAAATTTGCAGAAGAGCTTAGTGACAAGGGAACACATAGCCTAA
AAGCTGTAGAGGCCATAATGTTGAAAGACATCCAGGAAGACTCGCCTAGCATCGCCATAGAGATGTTCAAAATTGCCGCT
GTCATTTTTATTTTCGGGCATTTGCTATGTCCTTCGTCGAAGAATGACTACACCAGCGTAGACTACTGGGGTGCACTGAA
CACAACTTTAGAGATCAGTCAATTTGATTGGTGTGAATTTGTCATCGAGCACCTGTTAAGCGCTGTCCGAAAGCTGAAGA
CTGATCTTCAGACATGGCACTCAACTATACATCTTGTGGGTTGCCATCTGTTCCTACAGGTGAAATGAAATGTGTCCTAT
TTTTCTTGTTTGTTGCAAAAAAAG-TTCTGACAATGGCATGCATTCTGTCGTGATATACCATAGGTCCATGTTGATAAGA
GAAGTTCTGACATTTTTCTTATCACCCCTCATCAGGTTTTTGTGCTCGACAATTTGGACCTGGGTCAGCTAACTCCTCGA
GACCCTTCGACGCCCAGGGTCTGTGTTTTCGATTATGACATCACCCGCAAGATGATAGAGGCGCTCAGTTGCAGTCAAAG
TGGTGAACCAGCATTTTCAATCTCCAGGGTATGCCGGGGGACTCGCAATTTTTTTTGTATTTTTT-TCCAAGATGATAGG
GTCACTCAGTTGTTTTTCGAGTCATCCTTACTATGCAATCGATGACCACTTTTCTTAACAAC------------------
-----GGTTACTCTCGCATTTACATAATGCGGCATCCCTCACCAAACCGGTTGCTCGGCCAGAAGAGCCACATGTTCAGG
ACACCAG-ATCAAATGCTACAAGGTACAATTCAAGCGCGGCACCCAACTCAAACAGGCAGGGCACAGCTAGGAAAGGCCC
TGCTGACTTTGCAAACCATCTTCGTGCCCGGTATCCGAGCCTTGTAAGTAATCATTTTTCGCACCCTCATCCCAACATCC
AACATAATGACCAGCAAATCATTTTCAGTCACTACTTTTTTTAACTGCCTGTCCATGTTTTATTCTGCAGTTCTCACACC
CGGTAGCAATTTATCTGAGAGAACACAATGCTCGTGCCATGCGCAACATGTTCGAATTGCAGCAGGCATCATGCGACGTG
ATGGTTGCTTTTGCAGACAAGATAATGATTAGTTTAGCCGATGGG-TTTTACCGAGTAACTTCAACACCCCTGGGCATGA
AACTCATGCATTGCGAGACATTGCAATTGCTGGTACGA--CCCTGTACCGTTACGTCGTTTTTAGCCTTTTTTGGCCCGT
TAACCGTGTTAACCAGTTAGCCTTTTTAGAAATATAGATTATTCTACCCGTTAACCGTGTTAACCAGTTTCATGTTGCCC
AAATGATCATATAGGTGCATCACATACACCTGTCAATGTCCCACCAATCCGTTCTTTGGGTGCTAGCTTGCCGCCTGCAG
TACATGCGGATGGTAAGTGTTTTG--TTTTTTAGGTTTCCATACAGTGGTTTAGTACCAACACATTTTTTGAGCTCTAGT
AAGTGTTCCTGACATC
>SNPs
-------------------S----------------------------------------------------------S-
--------S-----------------------------S---S-S-----------------------------------
-------------------------------S--------S---------------------------------------
----------------------------------------------S---------------------------------
--------------------------------------S--------S----------------------S---------
----------------------S-------S--------------------------------------------S----
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----------S-S----------------S---S----------------------------------------------
-S----------S-----------------------------------------------S-------------------
-------------------------S-------------------------------SS---------------------
----------------S----------------------------S---------S---------S--------------
------------------------S--------------------------------------------S----------
-------S-------------------S---S-S----------------------------------------------
-------------------------------------------S---------------------S-------S------
-----------------------------------------------------S--------------------------
--------------------------------------------------------------------------------
------------------------------------------------S-----S--------------------S----
------------------------------------------------------------------S-------S---S-
------S----------S-S-----------------------------SS----------------S------------
--S-----------S-----------------------------------------------------------------
---------------S----------------------------------------------------------------
--------------S-----------------------------------------------------------------
-----------------------SS------S----S-------------------------------------------
----------S----------------------------------------------------------S----------
------------------------------------------------------------------------------S-
-----------------------------------S--------------------S--------S-------S------
-S-S----------------------------------------------------------SSSSSSSSSSSSSSSSSS
SSSSS----------S----------------S-------------------------S---------------------
-------S-------------------------------S-------------S----S---------------------
---S----------------------------------------------------------------------------
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-S-----------------------------S----S----------------------------------SS-----S-
---------------------------------------------S----------------------------------
-----------------------------------SSSSS--------S-------S---------------S-----S-
----------------------------S--------------------------S------------------------
---------------------------S---S------------------------------------------------
------------------------SS------------------------------------------------------
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>forward_476
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--------------------------------------------------------GGCCCCACTTTTTGCTTGAC----
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>reverse_2150
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---------------------------------------------------------------------CAGGTCTGACG
ATGTCGGTT-----------------------------------------------------------------------
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