>input_sequence_64092
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-----------------------------------------------------------ATGGGTTCCGTCTCCTACGTC
CTGGCGGCGGCCGTCCTGGCGGCGCTGGTCTCCGGCGGCGCGTGCATCCCCAGCGTGCCGCCGGGCCCCAACATCACCAC
CAACTACAACAACCAGTGGCTCCCCGCCAAGGCCACCTGGTACGGCAAGCCCACCGGCTCCGGCCCCAAAGACAACGGTA
CGACGTAATATCCATG----------------------------------------------------------------
--------------------------------------------------------------------CATTCCGTTTTC
TTGGATCGCGAT-------CTTGCACGGAGCCAGTGCTTACGTCTAGGT------GCATGCAGGCGGCGCGTGCGGGATC
AAGGACGTGAACCTGGCCCCCTACAACGGCATGATCGCCTGCGGCAACGTCCCCATCTTCAAGGACGGCAAGGGATGCGG
CTCCTGCTACGAGGTACGCACCACGTCTACTCCATCCACGTCGTTTACTAGAT---CTTCTACTTGATCGGCTGAGCGAC
CGCCAAAGTACGTGCGTGGATGGGTCGCAGATCAAGTGCCAGAAGCCGTCGCCGTGCTCCGACAAGCCCGTCACCATCTT
CATCACCGACAAGAACTACGAGCCCATCGCGCCGTACCACATCGACCTCTCCGGCAAGGCCTTCGGCGCCATGGCCCCGC
CCGGGAAGGAGCAGACGCTCCGCTCCTTCGGGGAGCTGGAGCTGCAGTTCAGGAGGGTGCGCTGCAAGTACGCGCCCGGC
ACCAAGATCACCTTCCACGTCGAGAAGGGCTCCAACCCCAACTACCTGGCCGTGCTCGTCAAGTTCGTCTCCGACGACGG
CGACGTCGTGCAGATGGACATCCAGCAGAGCAAGTCGCCCGCGTGGATTCCGCTGACCTTGTCGTGGGGCGCCATCTGGA
GGTGGGACGGCGCCACGCCGCTCAAGGGCCCCTTCTCCATCCGCGTCACCAGCGAGTCCGGCAAGAAGCTCATCGCCAAG
GACGTCATCCCCGCCAACTGGAAGGCCGACACCGTCTACCCGTCAAATATCCAGTTCTAG--------------------
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>chr1A_1_TraesCS1A01G208200
TCTTGTCTTCGTTTGTCTATGTTTGTGTGTCTACAGGTTGGATATTTCCGATCTACGCTTCTCTTTATCGACATCGGTTG
CTGTTCTGGCGTGCTGGTCCTATGGGAACTTAGCACGACGACTTCCCGACTGTTTTACAACAAGGTTTGCCTGGCTCCGA
TGAGGGAGGGGCCAAGACGGCGATGCGTCTTTGGCTCGCTCCAGTGCAAGTGGTCATCGCTAGGTGGTCTACGGACCTAG
GTATATTTTTACTTCTGGTGTTCTTTGTACTGCCTTGACAGTTGATGAATATATTGAAGGTTATCCTCGCCAAAAAAAAA
ATTCTGTCTTTCCCAACACCCGAATGCCGAGGGATAGTTGAATCTTTTGCCCCACTTTACATACGATAGGGTTTGATGAT
TTACCTCAGACTTGTCTCAATGGCAAGTGGTCCGGGCCCCATCCGTCATGTTTAAAGTTAGAAAAAAAAATGAGGCAAAA
GATCCAATTTCTCCAGGCCTACACCGAACGTTTTGTATCGACGGTGCAGCGCACGCATGCCATGGATCGCGAGAGTAT-A
CCACATGCAGATGCAGGGGTTCACTGACACGTTGTTGCACGTCGATGATAAGTGCAGGGGATAATGTTCCAGCCACAGGA
AAGTATAGCTAGGAATCGCGTAAATCCATCCATCCTGGCGT---------------------------------------
----------------------------------------GCGTTACCGCGGCACAATATTTACTGCGAGTAGG----TT
TCCTAATGTAAATGCAGAATCTACAGATCGAGAACGGAATAAACTGCGAGTCGGTTTCCT-----AGCTA---GCTGTGA
ACTGGTCGTCGTCG-CGCGCGCGCATGCGCAGCACCAACGCATGACCAAACCGCCGCTCCGCCGATCGCGTCGCCGCCCC
GCCGCCCCGCGCGCGCGCGCGCTGACGCAGCCGCTGATCCATCCGTCTCGCCTACAAATACCGCCCGCCGCCGCACGGCC
CTTCACCACCTACTGACACTCACACGCAACAACACACGAGTCCATCGA------TCGATATGGGTTCCGTCTCCTACGTC
CTGGCGGCGGCCGTCCTGGCGGCGCTGGTCTCCGGCGGCGCGTGCATCCCCAGCGTGCCGCCGGGCCCCAACATCACCAC
CAACTACAACAACCAGTGGCTCCCCGCCAAGGCCACCTGGTACGGCAAGCCCACCGGCTCCGGCCCCAAAGACAACGGTA
CGACGTAATATCCATG----------------------------------------------------------------
--------------------------------------------------------------------CATTCCGTTTTC
TTGGATCGCGAT-------CTTGCACGGAGCCAGTGCTTACGTCTAGGT------GCATGCAGGCGGCGCGTGCGGGATC
AAGGACGTGAACCTGGCCCCCTACAACGGCATGATCGCCTGCGGCAACGTCCCCATCTTCAAGGACGGCAAGGGATGCGG
CTCCTGCTACGAGGTACGCACCACGTCTACTCCATCCACGTCGTTTACTAGAT---CTTCTACTTGATCGGCTGAGCGAC
CGCCAAAGTACGTGCGTGGATGGGTCGCAGATCAAGTGCCAGAAGCCGTCGCCGTGCTCCGACAAGCCCGTCACCATCTT
CATCACCGACAAGAACTACGAGCCCATCGCGCCGTACCACATCGACCTCTCCGGCAAGGCCTTCGGCGCCATGGCCCCGC
CCGGGAAGGAGCAGACGCTCCGCTCCTTCGGGGAGCTGGAGCTGCAGTTCAGGAGGGTGCGCTGCAAGTACGCGCCCGGC
ACCAAGATCACCTTCCACGTCGAGAAGGGCTCCAACCCCAACTACCTGGCCGTGCTCGTCAAGTTCGTCTCCGACGACGG
CGACGTCGTGCAGATGGACATCCAGCAGAGCAAGTCGCCCGCGTGGATTCCGCTGACCTTGTCGTGGGGCGCCATCTGGA
GGTGGGACGGCGCCACGCCGCTCAAGGGCCCCTTCTCCATCCGCGTCACCAGCGAGTCCGGCAAGAAGCTCATCGCCAAG
GACGTCATCCCCGCCAACTGGAAGGCCGACACCGTCTACCCGTCAAATATCCAGTTCTAGAGCCTCTGCGACTCAATGCC
TCAGATCCATTTAGCACAGTTCGAATC--CTTTTGTTTAGGCTTTCTTTTTTGGCTATTTCATTTACTATA---------
--------------TAGCCACATAAACTAAAATCATGTACGTAGATTCATGTGCACGCCGTGCTTTTATCTTGTTTAGGA
TTCTAGTTTTGTACTCCATAGGATCCTACGATTATATTTGTTCTAATTTAGTGGAGTTTGATCCATTTCTTACCACCAGT
TGTGATCTGCTGACGGTCATGTTGCCATTTCATTA-TTTTCTCTCTCTTACGACATACTCCTAGAAGTATGGAACAATGG
CCGCACCTGATTCTAACTTGAGCCATACCCCTACCTGATTCACAAATCACAAGGTGCAACTAGCTAGGTTATGTTTAGGG
TTGAACGACTAGCATCGACCAAAGCTTTGAAGCGGCAACTACTACTTTGTA-----------------------------
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---------------GCT---------GGATGTCCGGCAAACACTAACCTTCTCTGTTTATGTACATATTTAAAACAGTT
TTGCTAAAGCACATCTAGATGTGTCATAAGTATTACACATCTAAGTCCTATGTCATTGATCTTACGTCGAGATTCGTGTG
GATATTTCTTTTTTTTTTCTTTTCTCTTTATGCTTGATTCACTCACTTAGATGTGCAATAACTAGAGCACATCTAAAGAC
GTAAGGTTTCATATTTCGCCCATCAGCGTTTCGCTCAC----TATCATCGTCCAAGCCCACT------------------
-----------------------------------------AGTTTTTCCACTAGTTTT-CGTTCAAACCCAAACACATC
TTATTGGTTTACCAAATGAAGTCGTGTCTTATTTAGCAAGTCAATAAGCATCGACTTCTTTTTAAGAAAGTGTTGATTCA
ATTGCCAGCTAAAGTATATTTTTTGGTATGTAATCATGATGAGTGTGCACAAAATACATACGGACAATTATCTATAGAAG
TATAGCATTGTAGACAATCCTAGAGACAGAAGGATGGAGATTGCTCTTCTTGACCAAGAACTTCCTATCACTTGAGCATC
TCC
>chr1B_437
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------------------------------------CCCTATCCGTCATGCTTAAAGTTAGAAGAAAAG-TGGGGCAAGA
GATTCAATTTCTGCAGGCCTACACCGAACGTTTTGTATCGACGGTGTAGCGCACGCATGCCATGGACCGCGAGAGTAT-A
CCACATGCAGATGCAGGGGTTCACTGACACGTTGCTGCACGTTGATGACAAGTGCAT-GGATAATGTTCGAGCCACGGGA
AA------CTAGGAATCGCGTAAACCCAACCATCCTGGCGTTTCTCAAAAAAAAAAAACCATCCTGGCGTGCACTAGCTG
GAAAATCATCAAGCAGTACACCACAAACGTTATAGGGATCGCATTACCGCGACACAACATCTGTTACATCCAAATTGATT
TCCAAATGTAAATGCAGAATCTACGGATCGAGAACGGAATAAACTGCGAGTCGGTTTCCTTAGCTAGCTA---GCTGTGA
ACTGGTCGTCGTCG-CGCGCGCGCATGCGCAGCACCAACGCATGACCAAACCGCCGCTCCGCCGATCGCGTCGCCGCTCC
G-----CCGCGCGCGCGCGCGCTGACGCGGCCGCTGATCCATCCGTTCCGCCTACAAATACCGCCCGCCGCTGCACGGCC
CTTCACCACCTACTGACACTCACTCACAAGTCACAACAAACACGATCGACACGGTCGATATGGGTTCCGTCTCCTACGTC
CTTGCGGCGGCCGTCCTGGCGGCGCTGGTCTCCGGCGGCGCGTGCATCCCCAAGGTGCCGCCGGGCCCCAACATCACCAC
CAACTACAACAACCAGTGGCTCTCAGCCAAGGCCACCTGGTACGGCAGGCCCACCGGCTCCGGCCCCAAAGACAACGGTA
CTCCCTCCGTCCGAAAATACTTGTCATCAAAATGAACAAAAAAGGATGTATCTAGAACTAAAATACATCTAAATACATCC
TGTTTTATTTATTTTGATGACAAGTATTTCCGGACGGAGGGAGTACGTCGTATGATCCATTTGTACTACATTCCATTTTC
TTGGATTGCAATTTGCAATCTTGCTCGGTGGGTATACTTAGGAATAGTTGCGCGCGCATGCAGGCGGCGCGTGCGGGATC
AAGGACGTGAACCTGGCTCCCTACAACGGCATGATCGCCTGCGGCAACGTCCCCATCTTCAAGGACGGCAAGGGATGCGG
CTCCTGCTACGAGGTACGTA------CTACTCCGTCCACGTCGTTC---AGAT---CTTCTATTTGATCGGCTGAGCGAA
CGCAAACGTACTTACGTGGATCGGTCGCAGATCAAGTGCCAGAAGCCGCCGCCGTGCTCCGACAAGCCCATCACCATCTT
CATCACCGACAAGAACTACGAGCCCATCGCGCCGTACCACATCGACCTCTCCGGCACGGCCTTCGGCGCCATGGCCACGC
CCGGGAAGGAGCAGACGCTCCGGTCGTTCGGGGAGCTCGAGCTGCAGTTCAGGAGGGTGCGCTGCAAGTACGCTCCCGGC
ACCAAGATCACCTTCCATGTCGAGAAGGGCTCCAACCCCAACTACCTGGCCGTGCTCGTTAAGTTCGTCTCCGACGATGG
CGACGTCGTGCAGATGGACATCCAGGAGAGCAAGTCGCCCGCGTGGATACCGCTGACCTTGTCGTGGGGCGCCATCTGGA
GGTGGGACGGCGCCAAGCCGCTCAAGGGCCCCTTCTCCATCCGCGTCACCAGCGAGTCCGGCAAGAAGCTCATCGCCAAG
GACGTCATCCCCGCCAACTGGAAGGCCGACACCGTCTACACGTCAAATGTCCAGTTCTAGAGCCT--GCAACTCAATGCC
TCAGATCCATTTAGCCCAGTTCCAATCCTCTTTTGTTTAGGCTTTCTTTTT-GGCTATTGCATTTACTAGCCACATAGCC
TCAGTTTTTTTTACTAGCCACATAAACTAAAATCATGTA----GATTCATGTGCACGGCGTGCTTTTATCTTGTTTAGGA
TTCTAGTTTTGTACTCCATAGGATCCTACGATTATATTTGTTCTTATTTAGTTGAGTTTGATCCATTTCTTACCACCAGT
CGTGATCTGCTGACGGTCAT--TGCCATTTCATTTTTTTTCTCTCTCTTACGACATA------GAAGTATGGAACAATGG
CCGCACCTGATTCTAAATTGAGCTGCACCCCTACCTGATTCACAAATCACAAGGTGCAACTAG----GTTATGTTTAGGG
TTGAACGACTAGCATCGACCAAAGCTTTGAAGCTGCAACTACTACTTTGTACTCTCTCGGTTCCGAATTACTTGTCTTAG
ATTTATCTAGATACGGATGTATCTAGCACTAAAATGAGTCTAGATACATCTGTATGTAGACAAATCCAAGACAAGTAATT
CGGAACGAGGGAGTAGCTGTGTTCGAGGGATGTCCGGCAAACACTAGACTTCTCTATTTATATATATA-TTTAAA-----
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--------------------------------------------------------------------------AAAGAC
GTAAGGTTATATAAGTATATC---------TCGTTCACTATATATCATCGTCCAAGCCCCACTACTTACGTCCTCTCCTC
TTCCCCCTCTCTGTTTTCCTTTTTTTTTCCTTCCATCTCTGATTTTTCCCACTAGTTTT-CGTTCAAACCCAAACACATC
TTATTGGTTTACCAAATGAAATCGTGTATTATTTAGCAAGTCAATAAGCATTGACTTCTTTTTACGAAAGTGTT--TTCA
ATTGCCAGCTAAAGTATATTTTTTGGTATGTAATCATGATGATTGTGTATAAAATACATACGGGCAATTATCTATAGAAG
TATATCGTTGGAGACAATCCTAGAGACAAAAGGATGGAGATTGCTCTTCTTGACCAAGAACTTCCTATCACTTGAGGATA
TCC
>chr1D_545
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----------------------------------------------------------------GATCGCGAGAGTATTA
CCACATGCAG-----GGGGTTCACTGACACGTTGTTGCACGTTGATGATAAGTGCATGGGATAATGTTCAAGCCACGGGA
AAG--TAGCTAGGAATCGCGTAAATCCATCCATCCTGGCGT---------------------------------------
----------------------------------------GCATTACCGCGACACAATATTTACTACGAGTCGG----TT
TCCTACTGTAAATGCAGAATCTACGGATCGAGAAGGGAATAAACTGCGAGTCGGTTTCCTTAGCTAGCTACTCGCTATGA
ACCGGTCGTCGTCGTCGCGCGCGCATGCGCAGCACCAACGCATGACCAAACTGCCGCTCCGCCGATCCCGTCGCCGCTCC
GCCGC----CGCGCGCGCGCGCTGACGCAGCCGCTGATCCATCCGTTTCGCCTACAAATACCGCCCGCCGCCGCACGGCC
CTTCACCACCTACTGA----CACTCACAAGTCAGAACAAACACGATCGACACGGTCGATATGGGTTCCGTCTCCTACGTC
CTGGCGGCGGCCGTCCTGGCGGCGCTGGTCTCCGGCGGCGCGTGCATCCCGAGGGTACCGCCGGGCCCCAACATCACCAC
CAACTACAACAACCAGTGGCTCTCCGCCAAGGCCACCTGGTACGGCAAGCCCACCGGCTCCGGCCCCAAAGACAACGGTA
CG---TAATATCCATG----------------------------------------------------------------
--------------------------------------------------------------------CATTCCGTTTTC
CTGGATCGCAAT-------CTTGCACGGGGCC-GTGCTTACGTCTAGGT------GCATGCAGGCGGCGCGTGCGGGATC
AAGGACGTGAACCTGGCTCCCTACAACGGCATGATCGCCTGCGGCAACGTCCCCATCTTCAAGGACGGCAAGGGATGCGG
CTCCTGCTACGAGGTACGTACTACGTCTACTCCATCCATGTCGTTTACTAGATCTGCTTCTACTTGATCGGCTGAGCGAA
CGCAAACGTACGTACGTGGATCGGTCGCAGATCAAGTGCCAGAAGCCTTCGCCGTGCTCCGACAAGCCCATCACCATCTT
CATCACCGACAAGAACTACGAGCCCATCGCGCCGTACCACATCGACCTCTCCGGCAAGGCCTTCGGCGCCATGGCCCCGC
CCGGGAAGGAGCAGACGCTCCGGTCCTTCGGGGAGCTGGAGCTGCAGTTCAGGAGGGTGCGCTGCAAGTACGCGCCCGGC
ACCAAGATCACCTTCCACGTCGAGAAGGGCTCCAACCCCAACTACCTGGCCGTGCTCGTCAAGTTCGTCTCCGACGACGG
CGACGTCGTGCAGATGGACATCCAGGAGAGCAAGTCGCCCGCGTGGATACCGCTGACCTTGTCGTGGGGCGCCATCTGGA
GGTGGGACGGCGCCAAGCCGCTCAAGGCCCCCTTCTCCATCCGCGTCACCAGCGAGTCCGGCAAGAAGCTCATCGCCAAG
GACGTCATCCCCGCCAACTGGAAGGCCGACACCGTCTACCCGTCAAGTGTCCAGTTCTAGAGCCT--GCAACTCAATGCC
TCAGATCCATTTAGCCCAGTTCCAATCCTCTTTTGTTTAGGCTTTCTTTTT-GGCTATTGCATTTACTAGCCACATAGCC
TCAGTTTTTTTTAGTAGCCACATAAACTAAAATCATGTACGTAGATTCATGTGCACGGCGTGCTTTTATCTTGTTTAGGA
TTCTAGTTTTGTACTCCATAGGATCCTACGATTATATTTGTTCTAATTTAGTTGAGTTTGATCCATTTCTTATCACCAGT
CGTGATCTGCTGACGGTCAT--TGCCATTTCATTTTTTC-CTCCGTCTTACGACATA------GAAGTATGGAACAATGG
CCGCACCTGATTCTAAATTGAGCTACACCCCTACCTCATTCACAAATCACAAGGTGCAACTAG----GTTATGTTTAGGG
TTGAACGACTAGCATCGACCAAAGCTTTGAAGCCGCAACTACTACTCTGTA-----------------------------
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---------------GCTGTGTTCAAGGGATGTCCGGCAAACACTAACCTTCTCATAT----TATATATTTAAAA-----
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--------------------------------------------------------------------------AAAGAC
GTAAGGTTTTATATTTCGCCCATCAGCGTTTCGCTCACTATATATCATCGTCC--------------------TCTCCTC
TTCCCCCTCTTTGTTTTGCTTTTTTCC-CCTTCCATCTCTGATTTTTCCCACTAGTTTTACGTTCAAACCCAAACACATC
TTATTGGTTTACCAAATGAAATCGTGTCTTATTTAGCAAGTGAATACGTGTTGACTTCTTTTTAAGAAAGTGTTGATTCA
ATTGCCAGCTAAAGTATATTTTT-GGTATGTAATCATGATGATTGTGTATAAAATACATACGGGCAATTATCTATAGAAG
TATAGCGTTGTAGACAAGCCTAGAGACAGAAGGATGGAGATTGCTCTTCTTGACCAAGAACTTCCTATCACTTGAACATC
TCC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----------S------------S----SS--S-----S-
---S--------S---------------------------------S---------------------------------
------------------------------------------S-------------S------------S------S---
---SS---------------------------------------------------------------------------
------------------------------------------S--------S-------------S--------------
------------------------S-------------------------------------------------------
-----------------------------------------------------------------------------S--
-----S----------------------------------------S---------------------------------
-----------------------S-S---SSSSSS--S-SSS-SSSSS--------------------------------
-----------------------------------------------------S--------------------------
----------------------S---------------------------------------------------------
--S-S---------------------------------------------------------------------------
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---------S------------------S---S-----------------------------------------------
-----------------S--------------------------------------------------------------
------------------S--S---------------------------------------------------------S
---S--S------S-------S-----------------------------------------------S----------
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----------------------S---------------------------------------------------------
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-------------------------S----------------------S-------------------------------
---------------S----------------------------------------------------------------
------------------------------------------------S----------------SS--S----------
---------------S------S----------------------------S-------S---------SS---------
---------------------------------------------------------S----------------------
----------------------------------------------------S---------------------------
S-------------------SS------------S----------------------SSSSSS-----------------
----------------S------S-S-------------------------------------SSSS-------------
---------------------------------S----------------------------------------------
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-------------------------------------------------------S-----S--S----------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
---------S-------------------------------------------------SSS------------------
------------------------------------------S----S--------------------------------
--------------------S------------------------------S----------------------------
------------------------------------------S----S-S-------------S----------------
------S-------------------------------------------------------------------------
---
>forward_157
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---------------------------------------------------------CAACAAGGTTTGCCTGGCTC---
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>reverse_1684
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---CAAAGTACGTGCGTGGATGG---------------------------------------------------------
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>forward_1680
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------------------------------------------------------------TACTTGATCGGCTGAGCGAC
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>reverse_2944
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---------------------------------------------------------------ACGTCGAGATTCGTGTG
GAT-----------------------------------------------------------------------------
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