>input_sequence_64089
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---------------------------------------------------ATGCGTTATGTGAATCCTGCTTCGGGTTG
CTCGGCCAAGGCCATGGACACTCTGCAGATTATGTCAGTCAAAGTTGCAGCAATCAACGGGGGCTTGCACTGGCCACTAC
AAGTGTTTGGTATCGTTGCTGCACGTGATTACTTGGATCGTAAGCGCAATATTATTTTCCACCGGCCGAGGACTGACTGC
CAAACCATCACCCAGGAGGTTCGTATTTGACTCTTCTCTCTTGGTTTTGTCTTAC-CATA--------------------
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-----------------------TGATGAAATGAACATTGTCGTTTAGTTAATTTTTGTTC------TGCGCATGCAGGA
TTGCTACCTAGCACTGTCCGGTCCTAGCCGTGCCATTGTCGTCTCATATGATCCTACATACGTTGAGGTTTCGCTCAAAG
TGAAGGGCGCT--ATTGAATCTGAGGATAAAGATTTAAGTGCTCTCATTGTGGTGTTTAGAGCTGGAGCCTGTCCTCAAA
ATGTCTACCCTAGCAGGCTTAGCACGCTGGAAATGAATTTTGATCACATTTATCAATCGGTGGAGGCCACGGTCTTTATA
AGAATTATTGGCGGGTCGTGGCCGGATGGCTTTCGGGGTGTATTTAGTGCTGCCTCCAGTAGGGATGACACCCTGCAAGT
CAAGTTACTTGAGTTTGAAGATGGTAGGTTGCCTGCTGACTCTAACGGTGTGATCGCGCTCACACGACGTGTGGTCTCTG
TTGCGCTTCAGAGGAACTTGAAGGTTTCTGTAATGGCATTTCCAAGAAACGTGGGATATGCTGCTGAGACCAGTGAAGCA
GTTTTACAACCTCATAGAGCCGGTGTAAGCCCCCCAGGAGTCAATCTCTGTGTTGGCTCGTGTAGTATGGAAGTTCGTGT
TGCTTGGTCATGTTTCTGTTGTGAGTGTTGACATGAGACCATCTTTAACTCATTTAATCTGTGTATTATATGTTGGTGTA
GTGGTATTGTGGCATTTTTTCTAGTGGTGTATGCTAG-------------------------------------------
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>chr7B_1_TraesCS7B01G088900
GGCGTCTGCTTGGAGCGCCAGAAGCCGAAACCGGCGTTCGCTCGAAAGAAAAAAGAAGCCTAAACCGGCGGTGAGAGCGA
GCTCTCCGACATCGACGCCGAGTTTGAATCGGAAACAGTTTCTTGAGTCGATCGCGTTCCAATTAATACGCTGGCCAACA
CGAACCCTCAATCTCTCTACGGTTTTCTTTTCTTTTTG-CCCAAGGAGAGCAGCGTCGGCGACTGCGACCGATCGACCT-
-------TGCCCACGGTGCTCTGGCCTCTGGAGATTAAAATACGACTGGTGACTCTTCGCTAGAGTTGAAATCCAGGGAG
GAGCCAGGAAAGACGTCTGAGATTCAGGCGACAAAACGAAATCAGAGGGATCAGATTGTTGAACGAGGCGAGGCTCGAGA
AGAAGCTGCTGAGGCCGAGAGAGCGA-CGAAGCCGATGGCGGCGACGAAGAAACCCAAGGCCAAGCCTCAAAAACCAGCC
AAGGTAACGGCTGCGAGGATAGCAAAGATGCTGGCTGAAGGGGATGAGATGATAAGAAACATGACACCTGAAGAAAGGGC
CAGGATTATTGCCGAGTCCATGGCTGAAAAATCGGCCCGCGAAGCTGCTGAGGCGAAAGATGAAGCTGGAGATGACGAGG
AGGAGACTGCACCGGCACAATGCGAGGAAGAATGGTTCGCTGCCAAGTTTCGCTCTATGTGGAGAAGATACTTAGCTCCC
GGCGGTGTTACTTTCGACCAAACCAGTAAGCCCTCTCCCCGTCCAATCACTTCTCTTGATCCATGCACACGTACGTCCTT
CTATGTTGTGCTTGTCACTGATACCAATTTGATACTCCCTCCGTCCCATAATATAATGTCAAAAACGTTCTTATATTATG
GGACCGAGGGAGCAATATAAGTTGCAGCATATATACGTCAATGGATTTGAATTTATCTCCTGTAGC-TAACTAATTAACT
GCTTTTATTTACATGTGATGTGATCGATCTATGCAGCATCTACTCCCTGCCATGCGTTATGTGAATCCTGCTTCGGGTTG
CTCGGCCAAGGCCATGGACACTCTGCAGATTATGTCAGTCAAAGTTGCAGCAATCAACGGGGGCTTGCACTGGCCACTAC
AAGTGTTTGGTATCGTTGCTGCACGTGATTACTTGGATCGTAAGCGCAATATTATTTTCCACCGGCCGAGGACTGACTGC
CAAACCATCACCCAGGAGGTTCGTATTTGACTCTTCTCTCTTGGTTTTGTCTTAC-CATA--------------------
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-----------------------TGATGAAATGAACATTGTCGTTTAGTTAATTTTTGTTC------TGCGCATGCAGGA
TTGCTACCTAGCACTGTCCGGTCCTAGCCGTGCCATTGTCGTCTCATATGATCCTACATACGTTGAGGTTTCGCTCAAAG
TGAAGGGCGCT--ATTGAATCTGAGGATAAAGATTTAAGTGCTCTCATTGTGGTGTTTAGAGCTGGAGCCTGTCCTCAAA
ATGTCTACCCTAGCAGGCTTAGCACGCTGGAAATGAATTTTGATCACATTTATCAATCGGTGGAGGCCACGGTCTTTATA
AGAATTATTGGCGGGTCGTGGCCGGATGGCTTTCGGGGTGTATTTAGTGCTGCCTCCAGTAGGGATGACACCCTGCAAGT
CAAGTTACTTGAGTTTGAAGATGGTAGGTTGCCTGCTGACTCTAACGGTGTGATCGCGCTCACACGACGTGTGGTCTCTG
TTGCGCTTCAGAGGAACTTGAAGGTTTCTGTAATGGCATTTCCAAGAAACGTGGGATATGCTGCTGAGACCAGTGAAGCA
GTTTTACAACCTCATAGAGCCGGTGTAAGCCCCCCAGGAGTCAATCTCTGTGTTGGCTCGTGTAGTATGGAAGTTCGTGT
TGCTTGGTCATGTTTCTGTTGTGAGTGTTGACATGAGACCATCTTTAACTCATTTAATCTGTGTATTATATGTTGGTGTA
GTGGTATTGTGGCATTTTTTCTAGTGGTGTATGCTAGAAAACTGTTCCTAGTTTTGTA--------CTGCTGGTAATGTG
GCATCTGTGGC-----C-AGCTGGTGTTTTAGTGGTGTATATGCTAGAAACCTGTTCCAAGTAGTAGTGTTCTGTACTAG
CTTCAGTGAGACTAGGTGGAAAGGAGATTGAGTGTGGATATGGTAGTTACTTTCAGATGTTGTTCATTTGCTGTATCCAG
CATCCA---------------CTGAACCTGTAATCTGATTACCGGATGCTACCTTTTTTATTCTCAGAGTACTGGATGCT
AACTCATGACTTTGTGTGCACATGATAGCAACTTTCACATTAGTACATTACTATTGTGTAAAACAATTCTGTTCCGTAAA
AGAGGGAAACAATAAATATTTTCAAGATAAAACTACTGATAGAATCATGCCGTAGATCAGTCAAGAATTGAAGAAGGTTG
TCAGTGGTTCATTGAGGACATAATGTCAAGACCATTTATTGAGAAACCGTCCTTTATATCCGACCAGTATAGAAAAATCT
TCCTTACTAGTAGACAAATCCTTGATACAGAAATCCAGAAGCACTACATATTTTACAAGGTTGAGCTGAGGCTGTGTAGG
ACCTTGAAGTATGTCTAGAGGGGGGGTGATTAGACTACTTGACCAATTAAAAACTTAACCTTTTCCCAATTTTAGAGTTT
GGCAGATTTTAGCAATCTTTGGACAAGTCAAGCAACCATCACACAATTCAAGCAAGCATGCAACGAGTATATGAGCAGCG
GAAATTAAAGCATGCAACTTGCAAGAAAGTAAAGGGAAGGGTTTGGAGGATTCAAACGCAATTGGAGACACGGATGTTTT
TGGCGTGGTTCCGATAGGTGGTGCTATCGTACATCCACGTTGATGGAGACTTCAACCCATGAAGGGTAACGGTTGCGCGA
GTCCACGGAGGGCTCCACCCACGAAGGGTCCACGAAGAAGCAACCTTGTCTATCCCACCATGACCGTCGCCCACGAAGGA
CTTGCCTCACTAGCGGTAGATCTTCA
>chr7A_1
GGCGTCTCCTTGGAGCGCCAGAAGCCTAAACCGGCGTTCGCTCAGAA-AAAAAAAATGCCTAAACCGGCGCTGAGAGCGA
GCTCTCCGACATCGACGCCGAATTTGAATCGGAGGCAGTTTCTTGAGCCGATCGCGCTCCAATTAATACGCTGGCCAGCA
CGAACCCTCGATCTCTCTACGGTTTTCTCCTTTTTATAACCCACGGAGAGCGGCGGCGGCGACTGCGATCGATCGACCGA
CCGACCGTGCCCACGGTGCTCTGGAGAAATTTGAGATTC-----------------------------------------
-------------------AGATTCAGGCGACAAAACGAAATCAGAGGAATCGGATTGTTGAACGAGGCGTGGCTGGAGA
AGAAGCCGCTGAGGCCGATCGAGAGAGCGAAGCCGATGGCGGCGACGAAGAAACCCAAGGCCAAGCCTCAAAAACCAGCC
AAGGTGACGGCTGCGAGGATAGCAAAGATGATGGCTGAAGGGGACGAGATGATAAGAAACATGACGCCTGAAGAAAGGGC
CAGGCTTATTGCCGAGTCCATGGCTAAAAAATCGGCCGAGGAAGCTGCTGCGGCGAAAGATGAAGTTGGAGATGACGAGG
AGGAGACTGCACCGACACAATGCGAGGAAGAATGGCTCGCTGCCAAGTTTCGCTCTATGTGGAGAAGATACCTAGCTCCC
TGTGGTGTTACCTTCGACCAAACCAGTAAGCCCCCTCCCCGCTCAATCACTTTCCTTGATCCTTGCTCACGAACGTCCTC
GTATGTTCTGCTTGTCACTCAATTTGAT----------------------------------------------------
-------------AAGATAAGTTGCAGCATATA--CATCAATGGATCTGAATTTATCTCCTGTAGC-TAACTAATTACCT
GC-TTTATTTACATGTGATGTGGTCAATCTATGCAGCATCTA-TCCCTTCCATGCGTCATGTGAATCCTGCTTCGGATTG
CTCGGCCAAGGCCATGGACACTCTGCAGATTATGTCAGTCAAAGTTGCAGCAATCAACGGGGGCTTGCACTGGCCACTGC
AGGTGTTTGGTATCGTTGCCGCGCGTGATTACTTGGATCGTAAGCGCAATATTATTTTCCACCGGCCGAGGACTGACTGC
CAAACCATCACCCAGGATGTTCGTATTTAACTC--CTCTCTTGGTTTTGTCTTTAACATC--------------------
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-----------------------TGATGAAATGAACATTATCATTTAGTTAACTGTTATTCTACGCATGCGCATGCAGGA
TTGCTACCTAGCACTGTCAGGTCCGACCCGTGCCATTGTCGTGTCATATGATCCTACATACCTTGAGGTATCGCTCAAAG
TGAAGGGCGCT--ACTGAATCTGAGGATAAAGATTTAAGTGCTCTTGTTGTGGTGTTTAGAGCTGGAGCCTGTCCTCAAA
GTGTCTTCCCTAGCAGGCTTAGCACGCTGGAAATTAATTTTGATCACATTTATCACTCGGTGGAGGCCACGGTCTTTATA
AGAATCATTGGCGGGTCGTGGCCGGATGGCTTTCGGGGTGTATTTAGTGCTGCCTCCAGTAGGGATGACACCCTGCAAGT
CAAGTTACTTGACTTTGAAGATGGTGGGTTGCCTGTTGACGCTAATGGTGTGATCACGCTCACACGACATGTGGTCTCTG
CTGCGCTTCAGAGGAACCTGAAGGTTTCTGTAATGGCATTTCCAGTTAAGGAGGGATTTGCGGCAGAGGCCAGCGAAGCA
GTTTTAGAACCTCATAGAGCCGGTGTAAGCCCCCCAGGAGTCAATCTCTGTGTTGGCTCGTGTAGTATGGAAGTTCGTGT
TGCTTGGTCCTGTTTCTGTTGTGAGTGGTGACATGAGACCATCTTTAACTCATTTAATCTGTGTATTATATGTTGGTGTA
GTGGTACTGTGGCATTTGTTCTATTGGTGTATGCAAGAAACCTGTTCCTAGTTTTGTA--------GTAGTGGTAATGTG
GCATCTGTTCTAGTGGC-AGGTGGTGTTTTAGTGGTGTATATGCTACAATCCTGTTCCAAGTAGTAGTGTTTTGTACTAG
CTTCAGTGAGACTAGTTGGAAAGGAGATTGAGTGTGGATCTGGTAGTTACTTTCAGATGTTGTTCATTTGCTGTATCCAG
CATCCATTGAGATGGCTTTTTCTGAACCTGTAATCTGATTACCGGATGCTACCTTTTTTCTTCTCAGAGTACTGGATGCT
AACTCATGACTTTGTGTGCACA----------------------------------------------------------
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>chr7B_903
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--------------------------------ATACGTCAATGGATCACAATTTTTATCTCATGTAATAGCTGACTAACT
GCTTAATTTAC------ATGTGATCAATCTATGCAGCATCTA-TCCCTGCCATGTGTCACACGAATCCTGCTTCTGAACG
CTCGGCCAAGGCCATGGACACTCTGCAGATTATGTCAGTCAAAGTTGCATCAATCAACGGGGATTTGCGCTGGCCACTGG
AAGTGTTTGGTATGATAGCTGCACGTGATGTCTTGGATCAGAAGCGCAATTTTATTTTCCACCGTGCGAGGACTAACTGC
CAGACCATCACCCAGGAGGTTCGTACTTAGCTCTTCTCTCTTGGTTTTGTTTTGACATCTTGGCATTACATGCAACTTCT
CTGCTAATTGTACGCAGTTTTTTTCTGCATTTGCCTATTGAAGCAACCATAAGCAACTATTTATGCATTTGCTGCTGTCA
GATTTAGTAATTCGTACATCTTACCATTTTGTCGTTGAAACTACCCATTTTGCTGTGAAAAGTAGAATAAATAGAATATT
CTACTACAGAGTTGATTGTTATTTGATGAAATGAACATTGTCGTTTACTTAAATTTTTTTCTCT------GCATGCAGGA
TTGCTACCTAGCACTGGCGGGTTCTACCCGTGCTATTGTCGTGGCATATGATCCTTCATACATTGAGGTTTCGCTGAAAG
TGAAGGGCACT--ACAGAATCTGAGGATAAAGATTTAAGTGCTCTTGTGGTGGTGTTTAGAGCTGGATACTGTCCTGAAA
GTGTTTACCCTAGCAGGCTTAGCACGCTGGAATTTAAATTTGATCACATTCAAG----------------AGTCGTTATA
AGAATCATTGGCGGGGCGTGGCCAGATGGATTTCGTGGTGTATATAGTGCTGCCTCCCGTAGTGATGACAACCTGCAGGT
CAAGTTGCTTGAATATGAAGATGGCGGATTGCCCGTTGATGCTGATGGTGTGATCACGCTCTCACGACGTGTGGTCTCTG
TTGAACTTGAGAGAAACCTGAAGGTTTCAGTAATGGCAATTCCAGTTAACGAGGGAGATGCCGTTGAGACCAGCGAAGCA
GTTTTAAAATCTCATAGAGCTGGTGTAAGTCCCGCAGGCATCAATCTCAACGTTGGCTCCTGCAATATGGAAGTTCGTGT
TGCTTGGTCCTGTTTCCGTCGTGAGTGTTGACATGAGACTATCTTTAACTCATTTAATCTGTGCATTATAAATTTGTGCG
GTGATATTGTGGCATTTGTTCTAGTGGTGTATGCTAAAAACATGTTCCAAGTTATGTA----------------------
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>chr7D_1249
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-----------------------TGATGAAATGAACAATGTCGTTTTAGTAATTGTTGTTCTA------CGCATGCAGGA
TTGCTCCCTAGCACTGACAGGTCCTACCTGTGCTATTGTCGCGTCATATGATCCTACACACGTTGAGGTTTCGCTAAAAG
TGAAGGGCACTTTACTGAATCTAAGGATAAGGATTTAAGTGATCTTGTTGTGGTGTTTAGAGCTGGATGATGTCCTCAAA
GTGTTAACCCTAGCAGGCTTAGCACTCTGGAAATTAATTTAGATCACATTTATCACTCGGTGGAGGCCACAGTCTTCATA
AGAATTATTGACGGGTCGTGGCCAGATGCTTTTCGGGGTGTATTTAGTGCTGCCTCCAGTAGTGATGACAACCTGCAAGT
CAAGTTACTTGATTTTGAAGATGGTGGATTGCCTGCTGATGCTAATGGTGTGATCACTCTCTCAGGACCTGTGGTCTCTG
TTAAACTTGAGAGGGACCTGAAGGTTTCTGTAATGGCATTTCCAATTAACAAGGGACATGCTGCTGAGACCAGCGAAGCG
GTTTTAAAACCTCATAGAGCCGGTGTAAGCTCCCCAGGTATCAATCTCAGTGTTGTCTCATGTAGTATGGAAGTTCGTGT
TGCTTGGTCATGTTTCAGTCCTAAGTGATGACATGAGATCATCTTTAACTCGTGTAATCCGTGCATTATATATCGGTGTA
GTGGTGTTGTGGCATTTGCCATAGTGGTGTATGCTAGAAGCCTGTTCCAAGTTATGTAGCATTGCTGTAGTGGTAATGTG
GCGTCTGTTCTGGTGGC--------GTTTCAGTGGTGTGTA---------------------------------------
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>chr7A_1462
CTACC---------------------------------------------------------------------------
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----------TAGCAGGCTTAGCACGCTGGAAATTCAATATGCTCATATTTACCACTCGGTGGAGGCCACCGTCTTCATA
AGAATCATTGGCGGGTCGTGGCCAGATGGTTTTCGGGGTGTGTTTAGTGCCGCCTCTAGTAGTGATGACAACCTAAAATT
CAAGTTACTTGACTCTGAAGATGGTGGGTTGCCTGTTGATGCCAATGGTGTGATCGCGCTTTCACGACGTGTGGTCTCCA
TTGGACTTGAGAGGATCCTGAAGGTTTCTGTAATGGCATCTTCAATTAATGAGGGACATGCTTCTGAGACTAGCGAAGAT
GTTTTGAAACCTCATAGAGCCGGTGTAAGCCCTCCAGGCATCAATCTATGTGTTGGATCCTGTAGTATGGAAGTTTGTGT
TGCTTGGCCTTGTTTTTGTTACGAGTGTTGACATGAGACCATCTTTAACTCATTTAACCTATGCATTATATGTTGGTGTA
GTGGTGCAGTTGCATTTGTTCTATTGGTGTATGCAGGAAAGTTGTTCCTAGTT-TGTA--------GTAGTGGTAATGTG
GCATTTGTTCTAGTGGCCAGGTGGTGTTTTAGTGGTGTATATGCTAGAATCCCGTTCCA---AGTGGTATTTTGTACTAG
CTTTAGTGAGACTAGTTGGAAGGAGATC-------------GGTAGTTACTTTCAAATGTTGTTCATTTGTTGTATCCAT
CATCCACTGACATGGCTTTCTCTGAACCTGTAATCTGATTACCGGATGCTACCTTTTTT--TCTTAGAGTATTGGATGCT
AACTCATAACTTTGTGCACATTG--TAGAAACCTTTACATTAGTACATTCCTATCGTGTAAAAAAATTTTGTTCCATAAA
AGAGGGAAAGGGTAAATATTTTTGGGATAAAACTACCAAAATAATCATGCCTTAGATCAGTCAAGAATTGAGGAATGTTG
TCATTAGTTCATTGAGGACATAA---------------------------------------------------------
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>SNPs
-------S------------------S----------------SS--S------S-S-------------S---------
---------------------S-----------SS------------S--------S--------------------S--
---------S------------------SS-S---S-S-----S-------S---S------------S---------S-
------------------------SSSSSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS-----------------------------S---S-----------------S----S----
------S-----------SS---S--------------------------------------------------------
-----S------------------------S-------------S--------------------S--------------
----S--------------------S-----------SSS----------S--------------S--------------
--------------S--------------------S-----------------------------------S--------
S-S--------S---------------------S-------SS---------SS--------S---S----S-------S
S------S-----------S-SSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS--S------------------------------S---------------------------------
-------------------------S----------------S--------------S------------------S---
------------------------------------------------------------------------------S-
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----------------------------S------------------------SS----S--------------------
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------------------S-------S---------------S-------------------------------------
--------------S------------------------------SS---------------------------------
S---------------------------------S--------------------S------------------------
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------------S------------S--------------S----S----------------------------------
-----------------S---------------------------SS----S---------------------S------
------S-------------------------------------------------------------------------
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-----------------S----------------------S-------------------------S-SS----------
--------SSS---------S----------------------------S---------------------S--------
---------------S-----------------------S----------------------------------------
-----------------------------------------------------------S--------------------
----------------------SSS---S---S--S-------------S----S--------S----S------S----
---------SSS----------SSS-----------SS-S-S---------S-------------------S---S----
---S-S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_754
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--------------CGACCAAACCAGTAAGCCCT----------------------------------------------
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>reverse_2007
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------CAACCTCATAGAGCCGGTGT------------------------------------------------------
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>forward_1715
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---------------GGCTTAGCACGCTGGAAATG---------------------------------------------
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>reverse_3028
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-------------------------------------------------------------------ACACGGATGTTTT
TGGCGTG-------------------------------------------------------------------------
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--------------------------
