>input_sequence_64082
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----------------------------------------------------ATGGCGTCGCCGGCGCTGGGGGCGGGGA
CGCCGCCGTTCCTCACCAAGACGTACGCGATGGTGGACGACCCGGAGACCGACGACACCATCTCCTGGAACGAGTCCGGC
ACGGCGTTCGTGGTGTGGCGCCGCGCCGAGTTCGAGCGCGACCTCCTCCCCAAGAACTTCAAGCACAGCAACTTCGCCTC
CTTCGTCCGCCAGCTCAACACCTACGTGCGTTCCGTCTCCGCCCGCCCACCT---------------CTCTCCGGCTGGT
TCGGTAGATCCAGATTACCAAGGGTGCTGCCGCGTTTGTTGTGCAGGGATTCAGGAAGATAGGCCTTGACAGGTGGGAGT
TCGCCAACGAGTGCTTCAGGAAAGGGGAGAAGCGCCTGCTCGGCGCGATACAGAGGCGGAAGGGATCTGGCGCCGGGGCG
CCGGCGCCCGCCATGATGGCGACGCCGATTGCGACGGCGATTCCGATCTCGCCCACGCCGACCAGCTCCGGCGGGGACGC
CGCGGTCTCCTCGTCGCCGCCGCCCGGGCTGGCGCTGGTGGCCACCGGCGCGATGGCCGAGCTGGAGGAGGAGAACGCGC
GGCTGCGGCGCGAGAACGCGAGGCTGGCGCGGGAGCTCGCGCGCGCGCGCCGCGTCTGCGACGGCGTGCGGCACCTCGTC
TGGCGGTATGACCACGGCGGGGAGGAAGTGGGGGAGGAGGACGAGAGGCACGGCGCCGCAGGCGCGAAGCCGATGCTGTT
CGGCGTCGCGATAGGGAGCAAGAGGTCGCGCGAGGACGGGCACGGGGGAGGGGATGAGGGAAATGGGGCAGAGGAGG---
------------------AGCAAGAACACGACGAGGA------CGACGAGAGGCACGCCGCCCGGCGAGAACAAGGGAAG
GCTATGAGGACGGAGCGGTCGGATCTGAATGTGCTGTCGCTGTCCGTGCGGGCGGCGGCGGCGGCGAGGCCCGACGGGGG
CTCGCGTGATCGTAGCGGAAACCACTAG----------------------------------------------------
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>chr2A_1_TraesCS2A01G401600
GCAGGTGGTGCTGGGGAGAATTGCAGGGTACTGCAACTCCTGGAAGATCCTGTGCAAAGGAAATGCAATAGAACGCATGG
AGATGTTTAGTGCGGCTATATGGGAGGCGGCAAGAAAACCACCGCTGCTACTCTGGCCAGAGCCAGGTTGAAGAAGAACG
AGCTCTGGCGGCTGTACTCCCTGCAAAAGATGGGTGGCTTGATGGGCATGGAGGAGAGCGTGTTTCCTGAAGAGTTGATA
TGGCCTCATGTCTCATCTTAATGTCAGTAGCCGGTCCATGTTTTAGCGTGTTTGTCCAGACTAATACTTTATTGCCTAGG
TTCTTTGTTTCTGTTTTGCTCTGCAAAAAGTTGTTGCCGGAGAGATACTCAATCTCCTCCCACGATCTATAATAATGATG
TACTCTGTGAGTTTCATTTTCTATGAAAATGGAACTGGGGCGGGACTGCCCTTTTCTTCTAAAAAAAAATTAGAGTCGAC
CATTATCTTACAGTCGGTTAAAAGAGTTTTCAGACTTACTCCCTTTGTTTAGTATTATAAAATGTTTTACTTATTTTCAA
TCAGTTTTATACACATTTTAGTGTGCCTGTTTACTCGTTTTAATTTTATAATAGTGAACGGAGAGAGCGTCATAT-AAAC
AATTTCATTTATTATTTTCTTTGTAGGCTTGCTTAAAACTCAAACAACATC------GTAAAGAAAAAACCTCAAACAAT
AGTCAAAATATTGGCTACCCAAACCGTCCTCCGCAAAGCTACAG-----CTCAGCCCGTCTTGAATCCCCGATCCAGCAG
CGCCGTTTCTAGAAACCTCGCCACGTGGCCGACTAGAAAGGATCGGAACCTTCCAGAACCCGCTGGATGCTTCTCGCCCC
ATCCCCAGCCTACCCCCATCACAAAATCCCCATTTCTAGACCATTCCTTCCTTTCCTGCGCAACCAAACCAAATCTCCCC
GTCTCCTCTCGCCAGAGCACCACCAGCACCGTCGCCCTCAACCAACTCATCAATGGCGTCGCCGGCGCTGGGGGCGGGGA
CGCCGCCGTTCCTCACCAAGACGTACGCGATGGTGGACGACCCGGAGACCGACGACACCATCTCCTGGAACGAGTCCGGC
ACGGCGTTCGTGGTGTGGCGCCGCGCCGAGTTCGAGCGCGACCTCCTCCCCAAGAACTTCAAGCACAGCAACTTCGCCTC
CTTCGTCCGCCAGCTCAACACCTACGTGCGTTCCGTCTCCGCCCGCCCACCT---------------CTCTCCGGCTGGT
TCGGTAGATCCAGATTACCAAGGGTGCTGCCGCGTTTGTTGTGCAGGGATTCAGGAAGATAGGCCTTGACAGGTGGGAGT
TCGCCAACGAGTGCTTCAGGAAAGGGGAGAAGCGCCTGCTCGGCGCGATACAGAGGCGGAAGGGATCTGGCGCCGGGGCG
CCGGCGCCCGCCATGATGGCGACGCCGATTGCGACGGCGATTCCGATCTCGCCCACGCCGACCAGCTCCGGCGGGGACGC
CGCGGTCTCCTCGTCGCCGCCGCCCGGGCTGGCGCTGGTGGCCACCGGCGCGATGGCCGAGCTGGAGGAGGAGAACGCGC
GGCTGCGGCGCGAGAACGCGAGGCTGGCGCGGGAGCTCGCGCGCGCGCGCCGCGTCTGCGACGGCGTGCGGCACCTCGTC
TGGCGGTATGACCACGGCGGGGAGGAAGTGGGGGAGGAGGACGAGAGGCACGGCGCCGCAGGCGCGAAGCCGATGCTGTT
CGGCGTCGCGATAGGGAGCAAGAGGTCGCGCGAGGACGGGCACGGGGGAGGGGATGAGGGAAATGGGGCAGAGGAGG---
------------------AGCAAGAACACGACGAGGA------CGACGAGAGGCACGCCGCCCGGCGAGAACAAGGGAAG
GCTATGAGGACGGAGCGGTCGGATCTGAATGTGCTGTCGCTGTCCGTGCGGGCGGCGGCGGCGGCGAGGCCCGACGGGGG
CTCGCGTGATCGTAGCGGAAACCACTAGTAGGATCTAAATCCA--------CCTCGCGTGATCGTAGCGGAAGCCAC---
--TAGGATCTAAATCGTGTACCACTCTAGCTCGCATTATGACGTCTTTGTATCTTGACGTGACAAGAATTGCATTGCTGG
TAGCACAATGTAGAATCAGCAAAACCAT----------------------------------------------------
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--GTAGAACAACTGGTAGATTGTTTGGTAGTTAGGGCCTGTTTGATTTCCATCTAGACCTAGGGTTGGGAAAATGAGAAG
AATTGGATGCCATGGTTTATTGTAGAGTTTTT-------TTTTTGCAGAAAGGCCAAGGTCATATTTAAGTAGCACAAAC
CCATAGAACCCCTATAGAAACAAGCAAA----------------------------------------------------
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------------------------------------------------------------------AAGAGTGTATGTGA
TGCAGGAGAAAAAAAACATCAT----------ACTCTTCTAACCC-ATAATCATGACTCAAGACCCTAATAGGTACACAT
CCTTTCTTTCAACACATGGCATCCCATCTATGTTGTCAATTATCCCCCTTCACACGCTCGCC----------GATGGTTT
GTTTCGTCTCCAATCCTGATTTTACTGAGGTGTTCATTTTTAATCCAGATCGGTATGAAAGAAGAAGAACCACGTGTTGT
TCATTAAGGTTGCATCATAAGTAACATTTTAAAAAATAATTAACAAATAAAATAACATCATATTTAGATTCTACATATTT
TCCTAATCAAAATTCATATATAACATATTGAATTTGAAGCTAGGTTTAAAAGATATGGATATTTTAAAAAGCATTTGATA
TGTATTGTGGGTTTATTAACCCAATTATTAGT-GGTTTCCTGCTAAAGTGAAAAATCTGACTTAAAACTGGTTTTCGGGT
TGATTATGAGAAATATTAGGAGGTTTCCTGCAAAACCAAAATTGGATTGCAGTTTAATTTTCAGAAACATCAGGGCAATC
TGATGGTCAAGACATGGCGAATCCAAGCGTTACTGACCATTTGATTTCCTATCAATTGCATCGGATTTTGCCATGTGTAC
TATTTAGAAGTTTCTGATAATTAAAAACTTATCCTAGAATCA
>chr2B_503
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----------------------AGAGTTTTCATACTTACTCCCTCTGTTTAGTATTATAAGATGTCTTACCTTTTT---A
TCAGTTTTATACACATTTTAGCGTGTTTGTTCACTCGTTTTAATTTTGTAA-AGTGAACGGAGGGAGTGTCATATAAAAC
AATTTCATTTACTATTTTCTTTGTAGGGTTGCTTAAAACTCAAACAACATAGGAGTAGTAAAGAAAAAACA-CAAACAAT
AGTCAAAATATTGGCTACCCAAACCGTCCTTCACAAAGCTACAG-----CTCAACCAGTCTTGAATCCCCGATCCAGCAG
CGCCGGTTCTAGAAACATCGCCACGTGGCCGACTAGAAAGGATCGGAACCTTCCAGAACCCGCTGGATGCTTCTCGCCCC
ATCCCCAGCCTACCCCCATCACAAAATCCCCATTTCTAGACCATTCCTTCCTTTCCTGTGCAACCAAACCAAATCTCTCC
GTCTCCTCTCGCCAGAGCACCACCAGAACCATCGCCCTCAACCAACTCATCAATGGCGTCGCCGGCGCTGGGGGCGGGGA
CGCCGCCGTTCCTCACCAAGACGTACGCGATGGTGGACGACCCGGAGACCGACGACACCATCTCCTGGAACGAGTCCGGC
ACGGCGTTCGTGGTGTGGCGCCGCGCCGAGTTCGAGCGCGACCTCCTCCCCAAGAACTTCAAGCACAGCAACTTCGCCTC
CTTCGTCCGCCAGCTCAACACCTACGTGCGTCTCCGCTCCACCCACCCACCTCCGCATCGCTCCCCTCTCTCCGGCTAGT
TCGGTAGATCCAGATTACCAAGGGTGCT---GCGTTTCTTGTGCAGGGATTCAGGAAGATAGGCCTTGACAGGTGGGAGT
TCGCCAACGAGTGCTTCAGGAAAGGGGAGAAGCGCCTGCTCGGCGCGATACAGAGGCGGAAGGGATCTGGCGCCGGGGCG
CCGCCGCCCGCGATGATGGCGACGCCGATTGCGACGGCGATTCCGATCTCGCCCACGCCGACGAGCTCCGGCGGGGACGC
CGCGGTCTCGTCGTCGCCGCCGCCCGGGCTGGCGCTGGTGGCCACCGGCGCGATGGCCGAGCTGGAGGAGGAGAACGCGC
GGCTGCGGCGCGAGAACGCGAGGCTGGCGCGGGAGCTCGCGCGCGCGCGGCGCGTCTGCGACGGCGTGCGGCACCTCGTC
TGGCGGTATGACCACGGCGGGGATGAAGTGGGGGAGGAGGACGAGAGGCACGGCGCCGCAGGCGCGAAGCCGATGCTATT
CGGCGTCGCGATAGGGAGGAAGAGGTCGCGCGAGGATGGGCACGGGGGAGGGGATGAGGAAAATGGGGCAGAGGAGGACG
GCGAAGACGAGGAGGAGGAGCAAGAACACGACGACGA------CGACGAGAGGCACGCCGCCCGGCGAGAACAAGGGAAG
GCTATGAAGACGGAGCGGTCGGATCTGAATGTGCTTTCGCTGTCCGTGCGGGCGGCGGCGGCGGCGAGGCCTGACGGAGG
CTCGCGTGATCGTAGCGGAAACCACTAGTAGGATCTAAATCCA--------CCTCGCGTGATCGTAGCGGAAAGCACTAG
-----GATCTAAATGGTGCACCACTCTAGCTCGCATTATGACGTCTTTGTATCTTGACGTGACAAGAATTGCATTGCTGG
TAGCACAATGTAGAATCAGCCAAGGCGT----------------------------------------------------
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--GTAGAACAACCGGTAGATTGTTTGGTAGTTAGGGCCTGTTTGGTTTCCATGTAGACCTAGGATTGGGAAAATGAGAAG
AGTTGGATGCCATGGTTTATTGTAGAGTTTTT-------CTTTTGTAAAAAGGCCAAGGTTGTATTTAAGTAGCACAAAC
CCATAGAATCCTATA-----------------------------------------------------------------
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-------------------------------------------------------GAAACTAGCAAAAGAATTTGTGCGA
TGCAACGGAAGAAAAAAAAAACTTACATTCTCACTCTTCTAACCCAATAATCATGACTCAAGACCCTAATAGGTATATAT
TTTTTCTTTAAACACATGACATCCCATCTGTGTTGTCAGTTATCCTACTTCGCACTCTTGCCGATGGTTATAGGTAGTTG
GTTTCATCTTCAATCCTGATTTTGCTGAGGCGCTCATTTTTAATTCAGATTGGTATGAAAGAAAAATAATCATAAGTTGT
TCATTAAGGTCGTACCATAAATAACATTTTTAAA-TG-ATTAACAGAT-AACTAACACCATGTTTAGATTCTACACATTT
TTCTAATCAAAATTCATGTATAACATGTTGAATTTGAAGTTAGGTTTAAAAGATATGGATATTTTAAAAAGCATTTGATA
TGTATTATGGGTTTATTAACCCAATTATTAGCGGGTTTCCTGCTAAAGTGAAAA-TCTGACTTAAGACTAGTTTACGGGT
TGATTACGAAAAATATCAGGAGGTTTCCTACAAAACCAAAA---------------------------------------
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>chr2D_570
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---------TACACGTTTTAGTGTGTCTGTTCACTCGTTTTAATTTTATAGTAGTGAAAGGAGAGTGTGTCATAT-AAAC
AACCTCATTTATTATTTTCTTTGTAGGGTTGCTTAAAACTGAAACAACATC------GTAAAAAAAA---CTCAAACAAT
AGTCAAAATATTGGCTACCCAAACCGTCCTTCACGTGGCCGACTTGAATCTCAGCCCGTCTTGAATCCCGGATCCAGCAG
CGCCGGTTCTAGAAACATCGCCACGTGGCCGACTAGAAAGGATCGGAACCTTCCAGAACCCGCTGGATGCTTCTCGCCCC
ATCCCAAGCCTATCCCCATCACAAAATCCCCATTTCTAGACCATTCCTTCCTTTCCTGTGCAACCAAACCAAATCTCGCC
GTCTCCTCTCGCAAGAGCACCACCAGAACCATCGCCCTCAACCAACTCATCAATGGCGTCGCCGGCGCTGGGGGCGGGGA
CGCCGCCGTTCCTCACCAAGACGTACGCGATGGTGGACGACCCGGAGACCGACGACACCATCTCCTGGAACGAGTCCGGC
ACGGCGTTCGTGGTGTGGCGCCGCGCCGAGTTCGAGCGCGACCTCCTCCCCAAGAACTTCAAGCACAGCAACTTCGCCTC
CTTCGTCCGCCAGCTCAACACCTACGTACGTTCCGTCTCCGTCCACCCACCTC---------------TCTCCGGCCAGT
TCGGTAGATCCAGATTACCAAGGGTGCTGCTGCGTTTGTTGTGCAGGGATTCAGGAAGATAGGCCTTGACAGGTGGGAGT
TCGCCAACGAGTGCTTCAGGAAAGGGGAGAAGCGCCTGCTCGGCGCGATACAGAGGCGGAAGGGATCTGGCGCCGGGGCG
CCGGCGCCCGCGATGATGGCGACGCCGATTGCGACGGCGATTCCGATCTCGCCCACGCCGACGAGCTCCGGCGGGGACGC
CGCGGTCTCGTCGTCGCCGCCGCCCGGGCTGGCGCTGGTGGCCACCGGCGCGATGGCCGAGCTGGAGGAGGAGAACGCGC
GGCTGCGGCGCGAGAACGCGAGGCTGGCGCGGGAGCTCGCGCGCGCGCGGCGCGTCTGCGACGGCGTGCGGCACCTCGTC
TGGCGGTATGACCACGGCGGGGAGGAAGTGGGGGAGGAGGACGAGAGGCACGGCGCCGCAGGCGCGAAGCCGATGCTGTT
CGGCGTCGCGATAGGGAGCAAGAGGTCGCGCGAGCACGGGCACGGGGGAGGGGATGAGGGAAATGGGGCAGAGGAGGACG
GCGAAGACGACGAGGAGGAGCAAGAACACGACGACGACGGCGTCGACGAGAGGCACGCCGCCCGGCGAGAACAAGGGAAG
GCTATGAGGACGGAGCGGTCGGATCTGAATGTGCTTTCGCTGTCCGTGCGGGCGGCGGCGGCGGCGAGGCCTGACGGGGG
CTCGCGTGATCGTAGCGGAAGCCACTAGCAGGATCTAAATCCACCTCGCGTCCTCGCGTGATCGTAGCGGAAAGCACTAG
ATTAGGATCTAAATCGTGTACCACTCTAGCTCGCACTATGATGTCTTTGTGTCTTGACGTGACATGAATTGCATTGCTGG
TAGCACAATGTAGAATCAGCAAAGCCATGTACTCCCTCCGTCCGGGTTTATTAGGCCTAAAGACAACTTCTCTTAGACCA
AGACACATAGTAATTTGCTCACATTAATTCTTCCATTTCACTTCCAATGCACTCTCTCACATGCATGCAACCAATGAAAA
AGCACACATGAAGTGTATTAAATTTTCAGCCATGGCACCAACAACAATAGTTTTCAATACAACCAATGAAATGGGTGCAT
GCATGCACCTTTCCAACACGGGGCCTTATAAAAGGGGACATGCTTGTGATGCTGAGAGGCCTAATAAACCCGGACGGAGG
GAGTAGAACAACTGGTAGATTGTTTGGTAGTTAGGGCCTGTCTGATTTCCATGTAGACCTAGGGTTGGGAAAATGAGAAG
AATTCGATGCCATGGTTTATTGTAGAGTTTTCTTCTTTCTTTTTGCAAAAACGCCAAGGTCATATTTAAGTAGCACAAAC
CCATAGAACCCCTATAGAAACTAGCGACAAATTTGACCAATAGACGAAATCAAATCACAGAATGAACTATCCGTGAAACT
ATTTCACGCGGCTGAACTTTTTGTGTAACGCCCGACACGAAGGCGCCACACTACACTGTGCAACGCCTCACAGTTAGGCG
CTACACAGCCAGCGTCGCACCCGTGTGATCCGAAAATTACTAAGTCAGTGTGCAGTGCCTGAGAGCTAGGCGCCACACTA
TACAGTGTAGCGCCTAGCTCCCAGGCGTTGCACTAGTGCAGCGACTGAGAGCTAGGCGCCACGGGTCAGCCGCGTGAAAT
AGTTTTACGGACAGTTCATTCTGTGATTTGATTTCGTTTATAGGTCAAATTTGCCGAAACTAGCAAAATAGTTTGTGAAG
-------------AAAAAAACATCACACTCTC------CTAACCCAATAATCATGACTCAGGACCCTAATAGGTACACAT
CCTTTCTTTCAACACATGACATCCCATTTGTGTTGTTAGTTATCCTCCTTCGCACTCTCGTCGATGGTTATAGATGGTTT
GTTTCGTCTCCAACCCTGATTTTGCTGAGGTGTTTATTTTCAATACAAGTCGATATGAAAGAAAAAGAATCATGCGTTGT
TCATTAAGGTTGCACCGTAAGTAGCATTTTTAAAATG-ATTAACAGATAAAATAACATTATATTTAGATTCTACATATTT
TTATAATCAAAATTCATGTATAACATGTTGAATTTGAAGTTAGGTTCAAAAGATATGAATATTTTAAAAAGCATTTGATA
TGTACTGTGGGTTTATTAACCCAATTATTACGGGGTTTCCCGCTAAGGTGAAAA-ATTGACTTAAAACTGGTTTGCGGGT
TGATTATGAGAAATATGAGGAGGTTTCCTACTAAACCAAAA---------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS----------S-----------S---------------S----S----S-S---SSS-
-------------------------S-----S-----------------------------------S------------
---------------------------S----------------------------------------------------
------------------------------S-S-----------------------------------------------
-----S----------S---------------------------------------------------------------
----------------------------------------------------------S------------------S--
--------------------------S---S-------------------------------------------------
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--------------------------------------------S--------------------------------S--
------------------------------S-------------------------------------------------
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-----------S--------------------------------------------------S-----------------
---------S----------------------------------------------------------------------
-------------------------------------------------S------------------------------
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----------------------------------S---------------------------------------------
-----------------------------------S-----------------------------------S--------
------------------------------------------------------------------------SS------
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-----------------------S--------------------------------------------------------
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----------------------------------------------------S---------------------------
-----------------------------------------------S--------------------------------
---------------------S---S-S----------------------------------------------------
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------------------------------------------------------------------------S-S--S--
----SSS---S-----S-SS-S----------------------------------------------------------
------------------S----------S--------S------S-----S---S------------------------
-----------------------S--------------------S------------------S-----S--S-S-----
--------------S---------------S----SSS-------S----------------------------------
-S---------------S--------S------------S----------------------------------------
-------------------------------S----------------------S-------------------S-----
----------------S------------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_206
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--------------------------AAGATGGGTGGCTTGATGGG----------------------------------
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>reverse_1311
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------------------------------CGCGTTTGTTGTGCAGGGAT------------------------------
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>forward_282
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----------------------GTCAGTAGCCGGTCCATGTT--------------------------------------
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>reverse_2073
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------------------------------------------------------------------------GCCACTAG
GATCTAAATCGTGT------------------------------------------------------------------
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