>input_sequence_64076
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---------------------------------------------------------ATGGCGCGCGCCGCCGTCTCCAC
CGCGCCGCTCTCCCGCCTCCACTCCCCCACGCCCTCCATTCCGTGCCACTCTGTGTC---------CTCGCAGCTCCGCA
TTCACCAGCAGCGCAAGCCCCTCACCGTCGCCTCGGCGCTGCCGGAGGTCGCGGACCTGCCGGGGCTCTCCCTGCCCGCC
GCGGCGGCCGCGGCCGCGGCCCTGGCTGCCGCGGTGTCCCTCTCCGACCCGGAGCGCCGGCGCAAGGCGCAGGCGGAGGC
GGTGGGCGGCGGGGACAAGGAGGCGGTGCGCGCCTACTTCAACTCCACGGGCTTCGAGCGGTGGCGCAGGATCTACGACC
CGGCCACGGACGACGTGAACCGCGTGCAGCTGGACATCCGGGAGGGCCACGCGCAGACGGTGGCCGCCACGCTGGCCATG
CTGCGGGACGCCCCGGACGTGCCCCTGTCCGGCGCCACGGTGTGCGACGCCGGGTGCGGGACCGGGTCGCTCTCCATCCC
GCTGGCCTCCGCGGGGGCCTCCGTGCTCGCGTCCGACATCTCCGCCGCCATGGTCTCGGAGGCGCAGCGGCAGGCGCAGG
CGGCCGCGTC------GTCGTCGCCGGGGTTCCGCATGCCGCGGTTCGAGGTGCGGGACCTGGAGAGCCTGGAGGGGCGG
TACGACGTGGTGGTGTGCCTGGACGTGCTCATCCACTACCCGCGGGAGGAGGCGCAGAAGATGATCCGCCACCTCGCCTC
CCTCGCCGGGAAGCGGCTGGTCATCAGCTTCGCGCCCAAGACGCTCTACTTCGACGTGCTGAAGCGCGTCGGCGAGCTGT
TCCCCGGCCCGTCCAAGGCCACGCGCGCCTACCTCCACTCCGAGAAGGACATCGAGGAGGCGCTCCGCGCCGCCGGCTGG
CGCGTCAAGAACAAGGGCTTCATCTCCACCCAGTTCTACTTCGCCAAGCTCTACGAGGCCGTCCCCGTCGCCGCCGGCTC
GTCGTAG-------------------------------------------------------------------------
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>chr7D_1_TraesCS7D01G062900
GTTTCCGTTCAGTCATTTATTTATTTCTAAAAAAGTTATTTATTTATTTATTATGTTTCTAAATATTCTAAATACATATA
CTACAAAAATTAATTTACTTAAAACTGCTAAATACATTCCACACATTTTAGAAAATAGTAAACTCACTCCAAAATTGGGT
CCGTGTAATTTTGGAAAAACTTTTGTACCATTCAAAAAATGGTTGTGACATATAAGCGTTTTCATATGCTTCAAAAAATT
ATTCACAACGTTTCTTAACGATGACTATACGATGTAAAAAA-TAGTTTCCTACAATTCAAAAAATGTTCATGACATTTAC
AGAATGTTCAAGCCTTTCAAAAATATGTTCATGGCATTTTAGGAAAACCTTATACAATATTGTTTTTTACATATTTAAAA
CATATAC-ATACCAAAACTTATGTGCATTTAAAAAATATTTAAGATGTATTCAAAAAAACTTAAACATGTACTCCCTCCG
TCCAAAAATAAGTGTCTTAACTTTGTACTAACTTTAGTACAAATTGGTACTAAGGTTGGGACACTTATTTTGGGACGGAG
GAAGAATCTAGAAACATGTTCATCTTGTATTTGAAAAATATTTAACGTGTATCACAAAAATGC-TTCTGTGTATAAACAT
TGTATAAAATATATTTGATTTTTTTACATGTAATTAAATAGGTAAAAATGAAAAAAAACTAAAAACCCGATGAAAAAACA
CGTAGAAACAAACAAGAGAAAAACCCTA-ATGGAAGCCTCCAAAACCTTTCTAAACAAGTTCATAAAAACTTTCTAATAC
CCAATCCAGAATGCCACAGTACTGAGCCGCCCCCCTAACGTGGCGCAAGACGGCAAGAGGCGAGATGAGCTACAGA----
--------GAACCCAATCCTAATTAGTAGGTCCTCTGAGGGTCTATCCACAAAAACCCTATCCCCAAAATCCCCAGCTCC
AGCACCCGCGAACCACTCGAAGAAGATTCAGCTGCT-CCTCCACGCTCCGACCGACCATGGCGCGCGCCGCCGTCTCCAC
CGCGCCGCTCTCCCGCCTCCACTCCCCCACGCCCTCCATTCCGTGCCACTCTGTGTC---------CTCGCAGCTCCGCA
TTCACCAGCAGCGCAAGCCCCTCACCGTCGCCTCGGCGCTGCCGGAGGTCGCGGACCTGCCGGGGCTCTCCCTGCCCGCC
GCGGCGGCCGCGGCCGCGGCCCTGGCTGCCGCGGTGTCCCTCTCCGACCCGGAGCGCCGGCGCAAGGCGCAGGCGGAGGC
GGTGGGCGGCGGGGACAAGGAGGCGGTGCGCGCCTACTTCAACTCCACGGGCTTCGAGCGGTGGCGCAGGATCTACGACC
CGGCCACGGACGACGTGAACCGCGTGCAGCTGGACATCCGGGAGGGCCACGCGCAGACGGTGGCCGCCACGCTGGCCATG
CTGCGGGACGCCCCGGACGTGCCCCTGTCCGGCGCCACGGTGTGCGACGCCGGGTGCGGGACCGGGTCGCTCTCCATCCC
GCTGGCCTCCGCGGGGGCCTCCGTGCTCGCGTCCGACATCTCCGCCGCCATGGTCTCGGAGGCGCAGCGGCAGGCGCAGG
CGGCCGCGTC------GTCGTCGCCGGGGTTCCGCATGCCGCGGTTCGAGGTGCGGGACCTGGAGAGCCTGGAGGGGCGG
TACGACGTGGTGGTGTGCCTGGACGTGCTCATCCACTACCCGCGGGAGGAGGCGCAGAAGATGATCCGCCACCTCGCCTC
CCTCGCCGGGAAGCGGCTGGTCATCAGCTTCGCGCCCAAGACGCTCTACTTCGACGTGCTGAAGCGCGTCGGCGAGCTGT
TCCCCGGCCCGTCCAAGGCCACGCGCGCCTACCTCCACTCCGAGAAGGACATCGAGGAGGCGCTCCGCGCCGCCGGCTGG
CGCGTCAAGAACAAGGGCTTCATCTCCACCCAGTTCTACTTCGCCAAGCTCTACGAGGCCGTCCCCGTCGCCGCCGGCTC
GTCGTAGCAAATGTGT---TCATAGACCGACTGTGGTTGTATCTTGCAGAGTGTAGCTAATACGTACGTGTATCTCTAAT
CTCTCGGTGGTATCTCTAATCTCTCGGTGGTTCAAGCATGATTCGTT---CTTGTCATCGTGCTGCGTCAAAGCTAGGCA
TTGCGCCATGAGTTTCTTCTTCG---------------------------------------------------ATATGG
ACATCGAGCATCGCTCTGCTCTGGTCTGAATGCCAGTGGACTCAGAGTCAGT-------GAGGAGACGTCGAGCAGAGCA
G-CTGCTGCAGATAAAAACAGAGAGCTCTGTTTATAGTCGAGCGCGCGCGCG--CCCTAGGGGCTA------TGCTGAAG
ATAATGCAGGGCGCCACCAGCAACCCTCGATGTGCGATGTTCTCCACCGCACGCTGCAGTGTCCTCCCCGTCCACCCACA
GCCGCGCGTCGCCGTCCCCGTGCCACGCCGGCGCGCGCGGGCGCTTACCGCCGTCTCGGCGAGGCCGCGCCGCGGAGGCG
CGCGCCGGGACCGCTCGTGGGACGACGACGGAAGCGGCGGGAGCGGCGACGAGGACGGCATCGACGAGAGCTTCTTCGGG
GACGCGCGTGACGAGGAGGAAGACGAGCCGGAGGAGGAGGAGGAGTCGCCGCCGCCTTTGGGGCCGGGGCGACGGGCGGC
CGGCTCGCCGGAGTCGCCCGGGGGGCAGCTGCGCGGGTCGGACGTGCTGCGGGCGCTGCAGCGGGCGGCCGCGGCGAAGG
AGGCCAAGAAGAAGAGCAAGCGGAGTGCGGGCGCCGCGCGGCCGGCGGCGCGGCGGCAGGGGAAGGGCGGCGGCGCGAAG
GCCGCGGATGAGGTCGTGGCGGGGGAGGCGAGGCCGATAGAGATAAGGCGCGAGTGGGCGCCGAGGATCCGGGAGCTGGA
GCTCAGGGTGCAGCAGCTCCTCCACAAACACCAGTAGGATTAAAGAGCTTTGTTGGTTATCATGGCTCGTAGTTTGTCGA
GCGACTAATCCATGATTGCGCCGGCGAAGAAGCGTGCTTT
>chr7A_8
-------TTCATTTATTTAATTATTTTTTTAAAATAA--TTATTTATTTACTATATTTCTAAATATTCTAAATACATATA
CTACAAAAATTAATTTACTTAAAACTGCTAAATACATCCCTCATGTTTTAGAAAATGGTAAACTCACTGCAAAATTGGGT
CCGTGTAATTTTGGAAAAACTTTTGTAGTACGTGGACG-TGGTTGTGACATATAAGC-TTTCCATATGCTTCAAAAAATT
ATTCGCAACATTTCTTAACAATGACTATACGATGTAAAAAAATAGTTTCCTACAATTCAAAAGATGTTCATCACATTTAT
AGAATGTTCAAGCCTTTCAAAAATATGTTCATGACATTTTAATAAAACCTTATACAATATTGTTTTT-ACATATTTAAAA
CACATACCATACCAAAAATTATGTGTATTTTAAAAATATTTAAGATGTATTAAAAAAATT---AACATGTGCTCTCTTCG
TTCCAAAATAAGTGTCTTAACTTTGTACTAACTTTAGTAAAAAGTTGTACTAAGGTTGAGACACTTATGTTGGAACGGAG
GAAGTATCTAAAAACATGTTCATCTTGTATTTGAAAAATATTTAACGTGTATCACAAAAAGTGTTTCTGTGTATAAAAAT
TGTATAAAATATATTTATTTTTTC-ACATGTAATTAAATAGGTAAAAATGAAAAAAAAGTAAAAACCCAATGAAAAAACA
CATAGAAACAAACAAGAGAACAACCCTACATGGAAGCTTCCAAAACCTTTCTAAACTAGCTCATAAAAACTTTCTAATAC
CCAATCCAGAATGCCAC-----------------CTAACGTGGCGCCGCGGCATATAAACGTGGCCCGGTCTCGGCAAAG
AGTTGCAGGGAACAAATTCTAATTAGTAATTTCTCCGAGGGTCTATCCACAAAAACCCTATCCCCAAAGTCCCCAGCTCC
AGCACCCGCGAACCACTCGAAGAAGATTCAGCTGCTCCCTCCACGCTCCGACCGACCATGGCGCGCGCCGCCGTCTCCAC
CGCGCCGCTCTCCCGCCTCCACTCCCCGACGCCTTCCGTCCCGTGCCACCCTCTGTC---------CTCGCAGCTCCGCA
TTCACCAGCAGCGCAGGCCGCTCACCGTCGCCTCGGCGCTGCCGGAGGTCGCGGACCTGCCCGGGCTCTCCCTGCCCGCC
GCGGCGGCCGCGGCAGCCGCGCTCGCGGCGGCGGTGTCCCTCTCCGATCCGGAGCGCCGGCGCAAGGCGCAGGCGGAGGC
GGTGGGCGGCGGGGACAAGGAGGCGGTGCGCGCCTACTTCAACTCCACGGGCTTCGAGCGGTGGCGCCGGATCTACGACC
CGGCCACGGACGACGTGAACCGCGTGCAGCTGGACATCCGCGAGGGCCACGCGCAGACGGTGGCCGCCACTCTTGCCATG
CTGCGGGACGCCCCCGACGTGCCCCTCGCCGGCGCCACGGTGTGCGACGCCGGGTGCGGGACCGGGTCGCTGTCCATCCC
GCTGGCCTCCGCGGGGGCCTCCGTGCTGGCCTCCGACATCTCCGCCGCCATGGTCTCGGAGGCGCAGCGGC------AGG
CCGCTCTCGCCGCCGGGTCATCGCCGGGGTTCCGCATGCCGCGGTTCGAGGTGCGGGACCTGGAGAGCCTGGAGGGGCGG
TACGACGTGGTGGTGTGCCTGGACGTGCTCATCCACTACCCGCGGGAGGAGGCGCAGAAGATGATCCGCCACCTCGCCTC
CCTCGCCGAGAAGCGGCTCGTCATCAGCTTCGCGCCCAAGACGCTCTACTTCGACGTGCTGAAGCGCGTCGGCGAGCTGT
TCCCCGGCCCGTCCAAGGCCACGCGCGCCTACCTCCACTCGGAGAAGGACATCGAGGAGGCGCTCCGCGCCGCCGGCTGG
CGCGTCAAGAACAAGGGCTTCATCTCCACCCAGTTCTACTTCGCCAAGCTCTACGAGGCCGTCCCCGTCGCCGCCGGCTC
GTCGTAGCAAATGTGTCCATCATAGACCGGGATTTGTAT--TCTTGTAGAGTGTAGCTAATACA----TGTATCTGTAAA
CTCT-------------AATCTCTCGGTGGTTCAAGCATGATTCGTT---GTTGTCATCGTGCTGCGTCGAAGCTAGGCA
TTGCGCCATGAGTTTCTTCTTGGATAAAGGAGGAATGCCATTGCCATGAATGGATCGGCGGAGTTGCAAGCTGCATATGG
ACATCGAGCATCGCTCTGCTCTGGTCTGAATGCCAGTGCACTCAGAGTCGGT-------GAGGACATGTGGAGCAGAGCA
GACTGCAGAT----AAAACAGAGAGCTCTGCTTATAGTCGAGTGCGCGCGCG--CCCTAGGGGCTAAGCTACTGCTGAAG
ATAATGCAGGGCGCCACCAGCATCCATCGATGCGCGATGTTCCCCACCGCACGCTGCAGTGTCCTCCCCGTCCACCAAAA
GCCGCGCGTCGCCGTCGCCGTCCCCCGCCGGCGCGCGCGGGCGCTCACGGCCGTCTCTGTCAGGCCGCGCCGCGGAGGTG
CGCGCCGTGACCGCTCGTGGGACGACGACGGCGGCGGGGGGAGCGGCGACGAGGACGGCATCGACGAGAGCTTCTTCGGG
GACGCGCGTGACGAGGAGGAAGACGAGCCGGAGGAGGAGGAGGAGT------CGCCTTTGGGGCCGGGGCGACGGGCGGC
CGTCTCGCCGGAGTCGCCCGGGGGGCAGCTGCGCGGGTCCGACGTGCTGCGGGCGCTGCAGCGGGCGGCGGCCGCGAAGG
AGGCCAAGAAGAGGAGCAAACGGAGCGCGGGC------------GCGGCGCGGCGGCAGGGGAAGGGCGGCGGCGCGAAG
GCCGCGGAGGAGGTCGTGGCGGGGGAGGCGAGGCCGGTAGAGATAAGGCGCGAGTGGGCGCCGAGGATCCGGGAGCTGGA
GCTCAGGGTGCGGCAGCTGCTCCACAAGCACCAGTAGG------------------------------------------
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>chr4A_878
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-------------CAGTCCTGATTAGTAACTCCTCTAAGGGTCTATCCACAAAAACCCTATCCCCAAAATCCCCAGCTCC
AGCGCCCGCGAACCACTCGAAGAAGATTCAGCTGCTCCCTCCACGCTCCGACCGACCATGGCGCGCGCCGCCGTCTCCAC
CGCGCCCCTCTCCCGCCTCCACTCCCCGACGCCTTCCGTCCCGTGCCACTCTCTCTCCCACGCCCACTCCCAGCTCCGCA
TTCACCAGCAGCGCAGGCCCCTCGCCGTCGCTTCGGCGCTGCCCGAGGTCGCGGACCTGCCCGGGCTCTCGCTGCCCGCC
GCGGCGGCCGCGGCCGCCGCCCTCGCGGCCGCGGTGTCCCTCTCCGACCCGGAGCGCCGGCGCAAGGCGCAGGCGGAGGC
GGTGGGCGGCGGGGACAAGGAGGCGGTGCGCGCCTACTTCAACTCCACGGGCTTCGAGCGGTGGCGCAGGATCTACGACC
CGGCCACGGACGACGTGAACCGCGTGCAGCTGGACATCCGCGAGGGCCACGCGCAGACGGTGGCCGCCACGCTGGCCATG
CTGCGGGACGCCCCGGACGTGCCGCTCGCGGGCGCCACGGTGTGCGACGCCGGGTGCGGGACGGGGTCGCTGTCCATCCC
TCTGGCCGCCGCGGGGGCCTCCGTGCTCGCGTCCGACATCTCCGCCGCCATGGTCTCGGAGGCGCAGCGGCAGGCGCAGG
CCGCCCTCGCCGCCGGGACGTCGCCGGGGTTCCGCATGCCGCGGTTCGAGGTGCGCGACCTGGAGAGCCTGGAGGGGCGG
TACGACGTGGTGGTGTGCCTGGACGTGCTCATCCACTACCCGCGGGAGGAGGCGCAGAAGATGATCCGCCACCTCGCGTC
GCTCGCCGGGAAGCGGCTGGTCATCAGCTTCGCGCCCAAGACGCTCTACTTCGACGTGCTGAAGCGCGTCGGCGAGCTGT
TCCCCGGCCCGTCCAAGGCCACGCGCGCGTACCTCCACTCGGAGAAGGACATCGAGGAGGCGCTCCGCGCCGCCGGCTGG
CGCGTCAAGAACAAGGGCTTCATCTCCACCCAGTTCTACTTCGCCAAGCTCTACGAGGCCGTCCCCGTCGCCGCCGCCTC
GTCGTAGCAAATGCGTTCATCATAGACCGGGATTTTTAT--TCTTGTAGAGTGTAGCTAATACA----TGTATCAGTAAA
CTCT-------------AATCTCTCGGTGGTTCAAGCATGACTCGTTCTTGTTGTCATCGTGCTGCGTCAAAGCTCGGCA
TTGTGCCATGAGTTTCTTCTTGGATAATGGAGGAATGCCATCACCATGAATGGACATCCT--------------------
------AGCATTGCTCAGCTCTGGTCTGGATGCCAGTGGACTCAGAGTCAGTGAGAACTGAGGAGATGTGGAGCAGAGCG
G-CTGCAGAT----AAAACGGAGTGCTCTGCTTATAGTCGAGCGCGCGCGCGCGCCCTAGCGGCTA------TGCTGAAG
ATAATGCAGGGCGCCACCAGTATCCATCGATGTGCGATGCTCTCCACCGCACGCTGCAGTGTCCTCCCCGTCCGTCCGCA
ACCTTGCGTCGCCGTCCCCGTCCCCCGCGGGCGCGCGCGGGCGGTCACCGCCGTCTCGGTGAGGCCGCGCCGCCGAGGCG
CGCGCCGGGACCGCTCGTGGGAGGACGACGGCGGCGGCGGGAGCGGCGACGAGGACGGCATCGACGAGAGCTTCTTCGGG
GACGCGCGAGAC---GAGGAAGACGAGCCGGAGGAGGAGGAG---------------------CCGGGGCGACGGGCGGC
CGGCTCGCCGGAGTCGGCCGCGGGGCAGCTGCGCGGGTCCGACGTGCTGCGGGCGCTGCAGCGGGCGGCGGCGGCGAAGG
AGGCCAAGAAGAGGAGCAGAAGGAGCGCGGGCGGGGCGCGGCTGGCTGCGCGGCGGCAGGGGAAGGGCGGCGGCGCGAAG
GCCGCGGAGGAGGCCGTGGCGGGGGAGGCGAGGCCGATAGAGATAAGGCGCGAGTGGGCGCCGAGGATCCGGGAGCTGGA
GCTCAGGGTGCAGCAGCTCCTCCACAAGCACCAGTAG-------------------------------------------
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>SNPs
SSSSSSS----S-S-----S------S-SS----SSSSS-----------S---S-------------------------
-------------------------------------S--S--SS-----------S-----------S-----------
---------------------------SS-SSSSS-SSS------------------S---S------------------
----S----S---------S------------------------------------------S--------S-------S
---------------------------------S-------SS------------------------S------------
--S--------------S-------S----S--------------------S------SSSSS-------S---S--S--
-S-S-----------------------------------S---S-S------------S---------S----S------
----S-----S-------------------------------------------------SSS--------------S--
----------------SS-----SS---------------------------------S---------S-----------
-S------------------S----------------S------------------S--S--------------------
-----------------SSSSSSSSSSSSSSSSS------------SSSSSSSS-SS-SSSSS-SSSS-SSS-S-S----
---------S-S----------------SS--------------------------------------------------
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---------------------------S-----S---S-S------------S---------------------------
---------------S---------------------------------------------S------------------
-----------------S-----S--S-----------------------------------------------------
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----------------------------------------S---------------------------------------
--------------------------SS-------------------------------------------S--------
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-S---SSSS-----------------------------------------------------------------------
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----------------------------------------S---------------------------------------
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-----------------------------SSSS-S--SSSS-----S----------------SSSSS-------S---S
----SSSSSSSSSSSSS---------------------------------S-----------------------------
---------------------S----------------------------------------------------------
------------------------------------------------------------------S--S----------
------S-SSSSSS----------------S-------------------------------------------------
----------------------S--S------------------------------------------------------
---------------------S--S--------------------S-------------S--------------------
-------------------------------SS-----------------------------------------------
----------------------------------------------SSSSSS----------------------------
---------------------------------------S-----------------------------S----------
------------S------S-----S-------SS-------S-------------------------------------
--------S-----------------------------------------------------------------------
---------------------------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_484
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----------------------------------------------------------------ACATGTACTCCCTCCG
TCCA----------------------------------------------------------------------------
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>reverse_1881
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----------------------------------------CGAGAAGGACATCGAGGAGG--------------------
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>forward_872
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----------------------------------------------------GCAAGAGGCGAGATGAGCTA--------
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>reverse_2351
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------------------------------TTTATAGTCGAGCGCGCGC-------------------------------
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