>input_sequence_64064
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---------------------------------------------ATGAATCCCGACCTGTCCCGGTGCGCCAGGCACCC
GTCGCAGCCGCCCTTCACCGGCTTCTGCTCCGCCTGCCTCCTCGAGCGCCTCTCCGCCGCCGCGCTACCGGCCACGCCCC
CGGCCCCCTCCCCGTCCCCCCT---TCCCCCTCCTCCTCCTCGCCCGGCCGCGGCGGCGGCTCATGAGGGGGAGGGGCGG
ACCACGCTGCTCCGGCTCTTCCAGCTCCACGACCAGCAGGACCGGCCCGCGCCGGTCGGAGCTGGAGACCAAGATCCCGA
GCCCAG---GGCCGAGCCGGAGCCGCCGCCACCGCTGCAGCGGAAGCGCTCCCTCCGGCAGTCCTGCGAGTGGATCGCCT
GCTGCGAGCACGGCCACGACCCCGCCTCCTGGCTCCCCTCCCGCCAGTCCTGGGACGCCAACGACTCCGCCTCCGCCTCC
GCCTCCGCCTCCGCCTCAACCTCCGCCGCCGCCGCCGCCGCGTCCAGCACC------------ACCGCCCCTGCCTCGGC
CTCCGCGCTCGTGCTCCACCCCAGCACAAG---CAAGGCCTCGCTCAGGCCGTGGTGGGACCGCACCCGCCGGGCGGCGA
ACCCGGTGGCGGGCTTCCTCAGCAGATCCCTGTCCTCCCAGTCGTGGCGGGAGA------CGGACGCCGCGGCGAGGTCC
CGGGCGCAGGGCCACGCCGCGGCCCGGGTCAACGGGGGCAGCCACTCCGTGTCGTCGTCCGCGGGCGGCGTCGACTCCGA
GGTGTCGCCGGCAGACTCGCTGCACGCGCATGTACATAGCGCCGGCCGCC---------GCGACTCCCTGCTCAGGAGGT
TCTACTGGCTCGGCCGCAGCAGCAGCGTCCACTGCCCGTCGCCCCGCCGGAGCCCCGACACCGGAATGCTGCGCTTCCAC
CGCACCCCTTCCACCACCA---GGAGCAAGACCCAAGCGAGGAGGCGTCTCCACCTCTTTCCTGCTCGCAGTCACAGACA
TCAGCAGCAACAACATTAG-------------------------------------------------------------
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>chr6A_1_TraesCS6A01G002000
ACAAGGGGATTGACAACCCTCTTGTCATGTTGGGGACTAGCGTGTGTGTGTTTGTTTGTTTGTTAGCTCGAGAGACTCCT
AGTGGATTGATAACATTGATTCTCTAACTGAGGGACATATTGCTCCCGTTCTGCTTCACCCTTATACTTGCGGAATCCCA
ACAACTCCTGTGGCACCGAGCAGCCTTCTTGGCCCTTGGACAGGCCTATTGCTGGGCTCCTTGTAAACGAGCCGCCCACT
ATGTAGTACACTGTCGTCCCCGAGTCAACAAGGCCAAGGCAATAACTTCGTCCATGGACATGGACACAGACACAAACACG
TAAAACGAACATATACGCGGTAGTGACTTACACGGAAAGGCCATATATAACGTAAAGGGTGATGGCCGATTGTAAACTGA
AGCCCGCAAACCAATCAATCAATCAATCGGACCTTTGTTTCAATCTACGTCTTGTTCATCCTTTGTCACGGCTCCCATTC
ATGGGCAACCCCCGCTCCTTACAATTTCGCCCGTCGATCGACGATCGAGCTAGAGGCAAGCGAATTGACCTAGCTCAGTC
AGTCGTGGCCATGAGCCCTGAGAGGGTCCCTTTTGGACGAGCGGGGCTTGTGGTTGGAAAGTCTCGGCTGAACTGTGTTG
CGTATCGCGCTCCGAGTTGGCTCTCCAACCTTCCATGTGGCTTTTGGGATTGTGTTTGTGGGAAGGTGGCTGAGAGAGCC
GTTGTGCTGTGAGGGGCGGGCCCACTTGGCAGCGAGAGAAGCCGAGCCAAGGACACAACGGCTCTCCCCCTTTCTGTCTG
TCCACTTCCAGTTGGATTCCCCACCACACCACACCCACTGAGAGTGAAGAGTGAAGACTGAGCTG-GGAGCGGAGCGGAG
CGGCGGGCTGGTCAAAGCCCTAGCCTTTG-TCCGGTCAAACCAAATCGATCCCCTTTC---CCCGCCGCGGAATTGGTCT
CGCCTCCGGCCCCCGGGCGGCGGCGGTGGCGGTGGCCGGCGGGCGATGAATCCCGACCTGTCCCGGTGCGCCAGGCACCC
GTCGCAGCCGCCCTTCACCGGCTTCTGCTCCGCCTGCCTCCTCGAGCGCCTCTCCGCCGCCGCGCTACCGGCCACGCCCC
CGGCCCCCTCCCCGTCCCCCCT---TCCCCCTCCTCCTCCTCGCCCGGCCGCGGCGGCGGCTCATGAGGGGGAGGGGCGG
ACCACGCTGCTCCGGCTCTTCCAGCTCCACGACCAGCAGGACCGGCCCGCGCCGGTCGGAGCTGGAGACCAAGATCCCGA
GCCCAG---GGCCGAGCCGGAGCCGCCGCCACCGCTGCAGCGGAAGCGCTCCCTCCGGCAGTCCTGCGAGTGGATCGCCT
GCTGCGAGCACGGCCACGACCCCGCCTCCTGGCTCCCCTCCCGCCAGTCCTGGGACGCCAACGACTCCGCCTCCGCCTCC
GCCTCCGCCTCCGCCTCAACCTCCGCCGCCGCCGCCGCCGCGTCCAGCACC------------ACCGCCCCTGCCTCGGC
CTCCGCGCTCGTGCTCCACCCCAGCACAAG---CAAGGCCTCGCTCAGGCCGTGGTGGGACCGCACCCGCCGGGCGGCGA
ACCCGGTGGCGGGCTTCCTCAGCAGATCCCTGTCCTCCCAGTCGTGGCGGGAGA------CGGACGCCGCGGCGAGGTCC
CGGGCGCAGGGCCACGCCGCGGCCCGGGTCAACGGGGGCAGCCACTCCGTGTCGTCGTCCGCGGGCGGCGTCGACTCCGA
GGTGTCGCCGGCAGACTCGCTGCACGCGCATGTACATAGCGCCGGCCGCC---------GCGACTCCCTGCTCAGGAGGT
TCTACTGGCTCGGCCGCAGCAGCAGCGTCCACTGCCCGTCGCCCCGCCGGAGCCCCGACACCGGAATGCTGCGCTTCCAC
CGCACCCCTTCCACCACCA---GGAGCAAGACCCAAGCGAGGAGGCGTCTCCACCTCTTTCCTGCTCGCAGTCACAGACA
TCAGCAGCAACAACATTAGCCATG----GACCGAGAAATGTTTCTCCTGCTGCAGGCTCAATGTGTCCTGGTCCTGGTGT
AAAGGC------CATTCAAGTTAACCAAATGTTGCTCTTCCATGTTGTCACAAGGATGTTTCAGGTTCACC---------
---------------------------------------------------------ATCAATTCAGAA---GTTGTCTT
GGTCGTGGTTTGCCGATATTTCGCTGCTGGCGACAGTAATCAGGCTGCCATATTGGACAGCATCGCGACCGACGGTGCCT
GTGAGTGGAAGACGCACGCCAAAATGTCCCCTCATTGGTAACTTGTAGGTGTTAATAATTCGTCCCATTCTTTGTACTAT
GTATGTTATACAATAAACTGCTGGATCCAGAAACTGAAATAGAAGCTGATAATAGCTGACCCTGTTC----GTTCATTCT
TAAGAGTTATGGCTGATGGGTGGAAATTCTTCTGCTGGTTTTTG--CTGTGGATGGAAATTCTTCTTTCTCTGCTTGCAG
TTTATCCTGATTCCTGAATGAATTCCCTTTTCTCCAGCCATGCTACAACTGATAAATATCTCTTGCATTCGCCTGGTTAT
GACATTTTCACCTGTTTGTTGGATACAGCATGGAACCCAAGG-TTCTTTTCTAGTGGTAGTGATGGCAGAATCAACTGTC
AACTTAAAGAAGCCTGATACTGGCTCGCAATGATATGGTTCATTCGTGTGGATGGGTTTTACCTAATTGTAGCCTATTTT
GCCCGTAGTGCTCTTCTCTCTTGCTCTGGTTCACTATTCTTCTTCTCTGATGCTGGCTCATTTGTGTGG-ATGAATTTTA
GTTAGTTATAGGCTATTGACCAATCTGGTCATTTTTGTTTTACTGCATGACATTGCTACAAAGGTGGGCACATCCAGTGA
TTACTTACCCATTACTTTTTGCACTGATTTAACAGTCATCCAGTGAAATATGTGTTGGCATGCTACTATCATGTTAAAGA
AGGGCCTTTTTATGAACCTTCTGTTGTGAACTTTGATATCTATTATGTAATTATTAAGACAAGAGG
>chr6D_824
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-----------------------CCCCACCATACCCACTGAGAGTGAGAGTG--AGAGTGAGCTTAGGAGCGGAGCGGAG
CGGCGGGCTGGTCAAAGCCCTAGCCTTTTTTCCGGTCAAACCAAATCGATCCCCTTTC---CCTGCCGTGGAATTGG---
---CTCCCGGGC---GGCGGCGGCGGTGGCGGTGGCCGGCGGGCGATGAATCCCGACCTGTCCAGGTGCGCCAGGCACCC
GTCGCAGCCGCCCTTCACGGGCTTCTGCTCCGCCTGCCTCCTCGAGCGCCTCTCCGCCGCCGCGCTCCCGGCCACGCCCC
CGGCCCCCTCCCCGTCCCCCCT---CCCCCCTCCTCCTCCTCCTCGACCGGTGGAGGTGGCGGAGGAAGGCGGGGGCAGG
ACGACGCTGCTCCGCCTCTTCCAGCTCCACGACCAGCAGGACCGGCCCGCGCCGCACGGGCCCGGGGAGCAAGATCCCGA
GCCCCG---GGCCGAC------------CCGCCGCTGCAGCGGAAGCGCTCCCTCCGGCAGTCCTGCGAGTGGATCGTCT
GCTGCGAGCACGGCCACGACCCCGCCTCCTGGCTCCCCTCGCGCCAGTCCTGGGACGCCAACGA------------CTCC
GCCTCCGCCTCCGCCTCAACCTCCGCCGCCGCCGCT---GCGCCCAGCACC------------ACCGCCCCTGCTTCCGC
CTCCGCGCTCGTGCTCCACTCCGGCTCCACCTCCAAGGCCCCGCTCAGGCCGTGGTGGGACCGCACCCGCCGGGCGGCGA
ACCCGGTGGCGGGCTTCCTCAGCAGATCCCTCTCGTCCCACTCATGGCGGGAGACGGACGCGGACGCCGCGGGGAGGTCC
CGGGCGCAGGGCGGCGCCGCGGCCCGGGTCAACGGGGGCAGCCACTCCGTGTCGTCGTCCGCCGGCGGCGTCGACTCGGA
GGTGTCGCCGGCCGACTCGCTGCACGCGCATGTACATAGCGCCGGCCGCC---------GCGACTCCCTGCTCAGGAGGT
TCTACTGGCTCGGCCGCAGCAGCAGCGTCCACTGCCCGTCGCCCCGCCGGAGCCCCGACGCCGGGATGCTGCGCTTCCAC
CGCACCCCTTCCACCACCA---GGAGCAAGACCCAAGGCAGGAGGCGTCTCAACCTCTTTACTGCTCGCAGTCACAGACA
TCAGCAGCAACAACATTAGCTGTTTCATGACAGAGAAATGTTTCTCCTGCTGCAAGCACAACCACAATGTGTCCTGGTGT
AAAGTCCCTCTTCAATCAAGTTAACCAAATGCTGCTCTTCCATGTTGTCGCGACGATGTTTCAGGTTCACTAGCCTGCCT
AGGTAATTGGTTGCAGTGCATATGAGCAAGATCACAGTGCGTCGATAGCCCTCCACAATCAATTCAGAATTTGTTGTCTT
CGTTGTGGTTTGCCGATATTTCGCTGCTGGCGACAGTAATGAGGCTACCATAATGGACAACATCGCAACGGACGGTGCCT
GGGAGTGGAAGATGCACACCGAAATGTCCCCGCGTCGGTAACTTGTAGGTGTTAATAATTCGTCCCATTCTTTGTACTAT
GTATGTTATACAATAAACTGCTGGATTCAGAAACTGAAATAGAAGCTGATAATAGCTGACCCTGTTCGTTCGTTCATTCT
TAAGAGTGTTCACTGATGGACACACTGCT--------GTTTTTG--ATGTGGATGGAAATTCTTCTTTCTCTGCTTGCAG
TTCATACTGATTCCTGAATGAATTCCCTGTTTTGAAGCCATGCTACAACTGATAAATATCTCTTGCATTCACCTGGTTAT
GACATTTTCACCTGTTTGTTGGATACAGCATGAAACTCAAGG-TTCTTTTGTAGTGGTAGTGATGGCAGAATCAACAGTC
AACTTAAACAAGTCTGATACTGGCTCGCAATGATATGGTTCATTCGTGTGGATGGGTTTTACCTAATTGTAGGCTATTTT
GCCCAAAGTGCTCTGCTGTCTTGCTCTGGTTCACTATTCTTCTTCTCTGACAC-GGTTCGTTTGTGTGGAATGAATTTTA
GTTACTTATAGGCTATTGACCAATCTGGTCATCTTTGTTTTATTGCATGACA----------------------------
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>chr6B_848
A-------------------------------------------------------------------------------
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-----------------------------------------------GAGTG--AGAGTGAGCTG-GGAGAGGAGCGGGG
CGGCGGGCTGGTCAAAGCCCTAGCC-TTTTTCCGGTCAAACCAAATCGATCCCCTTTCTTCCCCGCCGCGGAATTGG---
---CTCCGGCTCCCGGGCGGCGGCGGTGGCGGCGGCCGGCGGGCGATGAATCCCGACCTGTCCAGGTGCGCCAGGCACCC
GTCGCAGCCGCCCTTCACGGGCTTCTGCTCCGCCTGCCTCCTCGAGCGCCTCTCCGCCGCCGCGCTCCCGGCCACGCCCC
CGGCCCCCTCCCCGTCGCCCCTCCCTCCCCCTCCTCCCCCTCCTCGGCCGGCTGCAGCGGCGCAGGAGGGGGAGGGGAGG
ACGACGCTGCTCCGGCTCTTCCAGCTCCACGACCAGCAGGACCGGCCCCCGCCGGTCGAACCCGGGGAGCAAGATCCCGA
GCCCCCCCAGGCCGAC------------CCGCCGCTGCAGCGGAAGCGCTCCCTCCGCCAGTCCTGCGAGTGGATCGTCT
GCTGCGAGCACGGCCACGACCCCGCCTCCTGGCTCCCCTCCCGCCAGTCCTGGGACGCCAACGA------------CTCC
GC------CTCCGCCTCAACCTCCGCCGCCGCCGCT---GCGCCCAGCACCGCCGGCACCACCACCGCCACTGCTTCGGC
CTCGGCGCTCGTGCTCCACTCCACCTCAAG---CAAGGCCCCGCTGAGGCCGTGGTGGGACCGCACCCGCCGGGCGGCGA
ACCCGGTGGCGGGCTTCCTCAGCAGATCCCTCTCCTCCCAGTCCTGGCGGGAGA------CGGACGCCGCGGCGAGGTCC
CGGGCGCAGGGCGGCACCGCGGCCCGTGTCAACGGGGGCAGCCACTCCGTGTCGTCGTCCGCCGGAGGGGTCGACTCGGA
GGTGTCGCCGGCCGACTCGCTGCACGCGCATGTACATAGCGCCGGCCGCCGCCACCGCGGCGACTCCCTGCTCAGGAGGT
TCTACTGGCTCGGCCGCAGCAGCAGCGTCCACTGCCCGTCGCCCCGCCGGAGCCCCGACACCGGGATGCTGCGCTTCCAC
GGCACCCCTTCCACCACCACCAGGAGCAAGACCCAGGGCAGGAGGCGCCTCAACCTCTTTGCTGCTCGCAGCCACAGACA
TCAGCAACACCAACATTAGCCATG----GACAGTGAAATGTTTCTCCTGCTG------------------------GTGT
AAAGTCCCTCTTCAATCAAGTTAACCAAATGCTGCTCTTCCATGTCGTCGCAACGATGTTTCAGGTTCACTAGCCTGGTT
GCGGAG--------------------------------GCGTCGATAGCCCTCCACTGTCAATTCAGAATTTGTTGTCTT
CGTCGTGGTTTGCCGATATTTCGCTGCTGGCGACAGTAATCAGGCTGCCATATTCGACAACGTCGCC----ACGGTGCTT
GGGAGTGGAAGATGCACACCGAAATGTCCCCTCGTCGGTAACTTGTAGGTGTTAATAATTCGTCCCATTCTTTGTACTAT
GTATGTTATACAATAAACTGCTGGATTCAGAAACTTAAATAGAAGCTGATAATAGCTGACCCCT---GTTCGTTCATTCT
TAAGAGTTATGACTGATGGATGGAGATTATTCTGCTGTTTTTTG--ATGTGGATGGT-----TTCTTTGTCTGCTTTAAG
TTCATCTTGATTCCTGAATGA--TCCCTTCTGTCCAGCCATGCTGTAAATGACAAACATTTCATGCATTCACCTGATTAT
GACATATTCACCTGTTTGTTGGATACATCA--------------------------------------------------
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>chr2B_2360
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------TTATGACTGATGGATGGAAAATCTTCTGCTATTTTTTTTACTGTTGATGGAAATTCTTCTTTCTCTGCTTGCAG
TTCATCCTGATTCCTGAATGAATTCCCTTTTCTCCAGCCATGCTACAACTGATAAACATATCTTGCATTCACCTGGTTAT
GACATTTTCACCTGTTTGTTCGATACATCATGAAACTCATGGTTTCTTTTGTAGTGGCAGTGATGGCAGAATCAACTTCC
AACTTAAACAAGCCTGATACTGGCTTGCAATGATATGGTTCATTCGTGTGGTTAAG-TTTACCTAATTGTAGGCTATTTT
GCCCAAAGTGCTCTGCTGTCTTGCTCTGGTTCACTATTCTTCTTCTATGACACTGGTTCATTTGTATGG-ACGAGTTTTA
GTTAGTTATAGGCTATTGACCAATCTGGTCATCTTTGTTTTATTGCATGACATTGCTGCAAAGGTGGGCACATCCAATGA
ATACTTACTCATGACTTTTTGCACTGATTTAACATTCATCCAGTGAAACATGTGCTGTCATGCCACTATCATGTTAAAGA
AGGGCC-TTTTATGAACTTTCAGTTGTGAACTTTGATAT---------------------------
>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS--S-----S---------------SSSSSSS---S----------------------
----------------------------S------------------------------------------------SSS
SSS-------S----------------------------------------------------S----------------
------------------S-----------------------------------------------S-------------
------------------------------------------SS-S-S-S-----------S--S------------S--
--S---------------------------------------------------------S-S--S--S-----------
----S----------SSSSSSSSSSSSS--S----------------------------------------------S--
----------------------------------------------------------------SSSSSSSSSSSS----
-----------------------------------SSSS---S-------------------------------S-----
-------------------S-----S--------------S---------------------------------------
-------------------------------S-----------S------------------------------------
------------SS------------------------------------------------S--------------S--
------------S-------------------------------------------------------------------
----------------------------------------------------------------S---------------
-------------------------------------SS------------S--------S-------------------
-------------------------------S----------------------S--S---SSSSSSSSS----------
----S---------S----------------S-----------------S---S----------------S---------
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S----------------------------------------------------------S------S--S----------
-S----------S----S--S------------S-S--------------------------------------------
--------------------------S-----------------------------------------------------
-----------S-------S------------------------------------------------------------
--S-------------------------------------------------------------------S---------
--------------------------------S---S-------------S-----------------------------
--------S---------------------------------------------------------------S-------
----SS--------S--S--------------------------------SS----S-----------------------
--------------------------------S---------S--------------S------------------S---
S-------S---S---------------------S-------------S-----S--S-----S----------------
------S----------S---S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_215
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-----------------------------------TTGGACAGGCCTATTGCTGG-------------------------
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>reverse_2062
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-------------------------------------------------------------TGTGTCCTGGTCCTGGTGT
A-------------------------------------------------------------------------------
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