>input_sequence_64041
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-------------------------------------ATGGCGTGCCTGTCCTCCTCGCCGTCTGGCCGGCGCCTGTCGG
AGCTGCTGGAGGAGAGGCAGGAGCCCTTCTTCCTCGACCTCCACCTCCTGGAGAAGGGCTGCTCGGACCGGCTCCTCGAC
GGCTATGACACCGCCCTGTGCTGGCCAGCCGCAGCCGCCGGCAACGACGCGGCGTCCGTGCTCAAGCGACTCACCAGC--
-AAGAAGAAGAAGGCGGCACCCAGCTCCCGTGGTAAGAAGCTGCAG------------CAACAG---CCGGCGGCGGGCT
CCGGGCTCCTCCGGCTGCTGCTCTCCAAGATCCTCCACGGCAAGGCGGCCAGCCACAG---GCCCGCCTCCCTGCAGTGC
TCCGAGTCCTTCAGGAGGGTCTCGCCGTCGCCGTTGCCTTGCTCC---AAGCATCTCGATGCCGTGAAGCTCAGGGCCGA
CGCAGAGGTCGT---TGGCC---AGGAGACGGAGTACTCCGACTCCGAATACGACGAGGAGAAGCAGCAGAGCCCAGTCT
CCGTTTTGGAGCACCCGTTCGAGAGCTCTCCCGTCCACGCCCAGAGCAGGTTCTCCTACGTGCAAGACTCGCCCAAGAAC
GCCATGGCCATCGTCCGGGA------GCTCCTCATGGAGTTGGAGACGGCGTACACGCCTGCGCTGCGCACCCAGTTGTT
CGCCAAGTCCGAGGACCTCGGCATTGACGCCAACGATCTTGTCGACCACGACGCCG------ACGACGACTACTACTATC
GCACGAGCCCTAAGAACTTCCAAGAGGAAGACGGGACCAGAGCCGCCGGAAGCCCCGCCACCGGCGCCGCCTACTGGGCG
ACGCACCGAGCGGAGCTGGCCAGGGTGTCCGAGCTAGTCTCCTCGGAGGTGCCAAAGTCGAGACTGGACGCCGCCAGCGT
GCAGCCGGAGCGACGGGACGTCGGCGCCGACATAGAGAACGCCTTGCTCGATGCTTTGGTGCTGGAGCTCGTCATGGACC
TCGGTGGCTGCTAA------------------------------------------------------------------
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>chr3B_1_TraesCS3B01G476700
CTTCTAGGACAAGCAGTATGTGGTGTTCGTCGGGAAGGCTCCAGGGATTTACAGTT-ATGGGAAGCTTGCAATGAACAAG
TGGCAGGGTACAGCAACAACAAACATAAAGGGTTTAAGACTAGGTAGGCAGCATAAGATGCTTACTCCAAGTTTGTGCGA
AAGCAGACATGCAAGGTTGAAGTTGGCAAGGCGGCGCCACACTTTGGGGTGAAGAGCTTCATCCTCATTGTGCAGTTCGC
CGCCATTGCACTGTTGTGGCGTTGGTGTAGTCGTCGTGATCGTGTGTAAGGTGCAACAGGTAAGCTCACCACATAGGGTA
CAAGGTTAGCTCACCTTGCAGCCTGTGTGGAACCAAACAACGTTAACGTGTAGATGTGTGGGTTGAGACAATGCAAGACG
CTAAACACCGTGCGCAAACCCCTCCTCTAATGCAGGCAGTCTCGATGCAGGCAACCAAACGAGCTGCAAATGTTAAATTT
TTTGGCATGTTTTTCCTCGGCCAGGCCTAAT-TGAGAAGTGTATGCTATGCCGGCAAAAAC-TCACATGACAACCAAACA
TACCCTTAGAGATGTCACACGCACACGC-ACACATTGAGGTCACCCATGCATCCAAACACCCAGCCCAAACA--------
CCAAAAATAGCATGACTTTTGTTAAGGTGCTAGTCATATGTAG----TCATCTGTATCTGTATTTAACAAAACAGAGC-A
AATCAAACCTTGTCTGATGATCATAACAAAGAGACAAATC-AGACATCAACTTAAAAGAATCTCCTAACCTTCATGCATG
CATGTCTTCCTCTCATTGCACAACATATTCTTTGTCTCATCCTT---TCTTCTGAG-AAAACACGTTTAATTGGCCTTCT
CTTCTTA----TAAGCACC---------CCACCATACACCCATCTCCAACCCCACCTCCTCTT---CTCCTGCTAGCTCA
TTGTTCAAAACTCAAAGTTCAAACACATATTTTCTGTCTCTAGC--------------TCCTCATTGCCCATAAGCTCCC
GTGAGGCCGTG-------------------------AATGGCGTGCCTGTCCTCCTCGCCGTCTGGCCGGCGCCTGTCGG
AGCTGCTGGAGGAGAGGCAGGAGCCCTTCTTCCTCGACCTCCACCTCCTGGAGAAGGGCTGCTCGGACCGGCTCCTCGAC
GGCTATGACACCGCCCTGTGCTGGCCAGCCGCAGCCGCCGGCAACGACGCGGCGTCCGTGCTCAAGCGACTCACCAGC--
-AAGAAGAAGAAGGCGGCACCCAGCTCCCGTGGTAAGAAGCTGCAG------------CAACAG---CCGGCGGCGGGCT
CCGGGCTCCTCCGGCTGCTGCTCTCCAAGATCCTCCACGGCAAGGCGGCCAGCCACAG---GCCCGCCTCCCTGCAGTGC
TCCGAGTCCTTCAGGAGGGTCTCGCCGTCGCCGTTGCCTTGCTCC---AAGCATCTCGATGCCGTGAAGCTCAGGGCCGA
CGCAGAGGTCGT---TGGCC---AGGAGACGGAGTACTCCGACTCCGAATACGACGAGGAGAAGCAGCAGAGCCCAGTCT
CCGTTTTGGAGCACCCGTTCGAGAGCTCTCCCGTCCACGCCCAGAGCAGGTTCTCCTACGTGCAAGACTCGCCCAAGAAC
GCCATGGCCATCGTCCGGGA------GCTCCTCATGGAGTTGGAGACGGCGTACACGCCTGCGCTGCGCACCCAGTTGTT
CGCCAAGTCCGAGGACCTCGGCATTGACGCCAACGATCTTGTCGACCACGACGCCG------ACGACGACTACTACTATC
GCACGAGCCCTAAGAACTTCCAAGAGGAAGACGGGACCAGAGCCGCCGGAAGCCCCGCCACCGGCGCCGCCTACTGGGCG
ACGCACCGAGCGGAGCTGGCCAGGGTGTCCGAGCTAGTCTCCTCGGAGGTGCCAAAGTCGAGACTGGACGCCGCCAGCGT
GCAGCCGGAGCGACGGGACGTCGGCGCCGACATAGAGAACGCCTTGCTCGATGCTTTGGTGCTGGAGCTCGTCATGGACC
TCGGTGGCTGCTAATCGA--------TGGCGC--------CCAATCCGCCGGTGTAGGTGCAGGACGAAGAACAGAGCGG
CGACCTCTGCG-----TTGCTCTGTTTTTGTTG-GGTAGTTGCTCATAGGCCGGGCCCTACTACTCAGTGCCAAGTGGAG
GCTGTAGAC----------AAAAT--AAATATATTAATTAATTGATTTGTTCTTT-TTTGAGAAAATTCTTTTGGTCTTT
ATGCGTTATAACTTATAAGTAGACAGAGTAAGCTTCGTATTTTTTTAAGCCAGTACTAGGCGCCGGCGCACGCGCAGCCC
TCAGATCACTCCACACGCAGCCGT---ATATCTCTCTCCCCTTGTCTTTTTCACATCCTTGCGTCCACATCCTAAACGAA
AAAAACCACAAAAACAAAACTATG-CGGCCGCCCACTCCCCCTTCCCCTGCATCGTGCAGCACGCGGTACCTCCCCTCAT
GCCCAGCCGCCCCCGTCGCTCGTCGTCGACCCTCACCACCGGCACACTCGCCATG---------GCAAACAAAAA-GGTT
CGTTGGTTCCAGCAAAACCGAAGAACAGTTGTAGCAGAAAAATACGCTGGTTCCAGCAAAACTTCAAGATGATGGTAACA
AAAATAACGGATGTTTATTCCAGCAAGAATCAGAAGGTATATAAGAAATAGAAATTATGCTTCAACAAAAAAAAAGAAAA
TGTTTCCAGCAAAAGCACTTGCCGCTTCCAGCAAAACTATGAATTATTGTCACTGG----GTCGTAGCAAAAAAAAAATC
ATCGCTTCCAGT--AAAAAA-ATTGCTGGTTCCAGCAAGGATAGATCGC---------CGTCGCACCACGGCTGTCGCCG
GTTCCATCATTTGTTTTGCTGGTTGCAACTCCACCGGCCTATGGTTGTAGCTCTGCCG----------------------
CGCCAGGGTAGCAGCATCTCCGCCGGCGAATCGCATCAGTGGTTGGCGTCGGCCGTCCCGCTTGTAGCCCGTCGTTGCCT
CTCCTCAAAATAGGGGGCTCCGCTGCTTGTAGCACTTGCGCTGGCCGACTTGCAGCACTTG
>chr4D_4
---CTAGGACAAATGGTATAAGGTGTTCATCGGGAGGGCTCCAGGGTTTTACAGTTCATGGGAAGCTTGCAATGAACAAG
TTTCAGGGTACAAGCATAGTAGCCACAGAGGGTTTAAGACTTGGCAGGCGGCAGAAGATGCTTACTCCAAGTTTGTGCGA
AAGCAGGCATGCAAGGTTGAAGTTGGCAAGGCGGTGCCACACTTTGGGGTGAAGAACTTAATCATCCTCCTACAGTTCGT
CGCCATTGCAGTGGTGTGGCGTTAGTGTGGTCGTTGTGATTGTGTGTAAGGTGCAACGGTTAATCTCACCACATAGGGTA
CAAGGTTAGCACAACTTGATGCATGTGTGCAACCAAAAAA------CGTGTACATGTGTGAGTTCAGACGATGTAGGACG
CCAAACACCGTGCGCAAAGCTATCCTCTAATGCAGGAAGAGGGTATGTAGTCAACCAAACTAGGTGCAGATGTTGG--TT
TTTTGTCTGTTTTCTCTCAGCCAGACTCGG-CTGGGAAGTGTATGCAATGCAGGAAAAAAT-TGAGACGACAACTAAA--
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>chr4A_5
----TAGGACAAGTGGTATAAGGTGTTCATCGGGAGGGCTCCAGGGGTTTACAATTCATGGGAATCTTGCAATGAACAAG
TTTCAGGGTACAAACACAGTAGCCACAGAGGGTTTAAGACTAGGCAGGCGGCACAAGATGCTTACTCCAAGTTTGTGCGA
AAGCAGGCATGCAAGGTTGAAGTTGGCAAGGCGGCGCCACACTTTGGGGTGAAGAACTTCATCATCATCCTACAGTTCGT
CGCCATTGCAGTGATGTGGCGTTAGTGTGGTCTTTGTGATTGTGTGTGAGGTGCAACGGGTAATCTCACCACATAGGGTG
CAAGGTTAGCGCACCTTGATGCATGTGTGCAACCAAACAA------CGTCTACATGTGTGAGTTCAGACGATGCAGGACG
CCAAACACCGTGCGTAAAGCTATCCTCTAATGCAGGCAGAGGGTATGTAGTCAACCAAACTAGGTGCAGATGTTGG--TT
TTTTGTCTGTTTTCTCTCAGCCAGGCTCAGCCTGGGAAGTTTATGCAATGCAGGAAAAAAAATGAGATGACAACTAAA--
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>chr3B_562
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----CTTAGAGATGTCACAGGCACATAATGAACACTGAGGTCACCCATGCATGC-AACACCCAGCCCAAACG--------
CCAAAAATAGCATGACTTTTGTTAAGGTGCTAGTCTTATGTACGTGGTCATCTGTAT----ATT-AACAAAACAGAACAA
AATCAAACCTTGTCTCATGATCGTAACAAGAGACAAGACAGAGGCACCAACTTAAAAGAATCTCCTAACCTTCATGCG--
--TGTCTTCCTATCACCGCACAATATATTCTTTGTCTCATCGTCTCTTCTTCTCAG-AAAACACGTTTAGTTGGCCTTCT
CTTCTTA----TAAGCACCCCTCC-ACACCAC---ACACCCATCTCCAACCCG-CCTCCTCTTCTCCCCCT---AGTTCA
TTGT-------TCAAAGTTCAAACACATATTTTCTGTCTCTA-------CTCTCTGCTTCCTCATTGCCCCTAAGCTCGT
--------GCGGTGGTCTTCGTCCTTTTGCGACGCTAATGGCGTGCCTGTCCTCCTCGCCGTCCGGCCGGCGCCTGTCGG
AGCTGCTGGAGGAGAGGCAGGAGCCCTTCTCCCTCGACCTCCACCTCCTGGAGAAGGGCTGCTCGGGCCGGCTCCTCGAT
GGCTATGACACCGCCATGTGTTGGCCAGCCGCAGCCGCCGGCAACGACGCGGCGTCCGTGCTGAAGCGACTCACCAGC--
-AAGAAGAAGAAGGCGGCACCCAGCTCCCGTGGTA---------AGAAGCGGCAGCAACAGCAA---CCGGCAGCAGGCT
CCAGTCTCCTCCGGCTGCTGCTCTCCAAGATCCTCCACGGCAAGGCGACCAACCAG---AAGCCCGCCGCCCTGCAGTGC
TCCGACTCCTTCAAGAGGGTCGCGCCGTCGCCGTTGCCTTGCTCCTCCAAGCATCTCGACGCCCTGAAGCTCAGGGCCGA
CGCAGGGGTCGTCGGCGGCC---AGGAGACGGAGTACTCCGACTCCGAATACGACGACGAGAAGCAGCAGAGCCCGGTCT
CCGTTTTGGAGCACCCGTTCGAGAGCTCTCCTGTTCACGGGCAGAGCAGGTTCTCCTACGTGCAAGACTCGCCCAAGAAC
GCCATGGCCATCGTCCGGGA------GCTCCTCATGGAGATGGAGACGGCGTACACGCCTGCGCTGTGCACCCAGTTGTT
CGCCAAGTCCGAGGACCTCGGCATTGACGCCAACGATCTTGTCGACCACGACGCCG------ACGACGACTACTACTATC
GCACGAGCCCTAAGAACTTCCAAGAGGAAGACGGGACCAGAGCCGCCGGAAGCCCCGCCACCGGCGCCGCCTACTGGGCG
ACGCACCGAGCGGAGCTGGCCAGGGTGTCTGAGCTAGTCTCCTCGGAGGTGCCAAAGTCGAGACTGGACGCCGCCAGCGT
GCAGCCGGAGCGACGGGACGTCGGCGCCGACATAGAGAACGCCTTGCTCGATGCTTTGGTGCTGGAGCTCGTCATGGATC
TCGGTGACTGCTAATCGA--------TAGCGC--------CCA--------GTGTAGGTGCAGGACGAAGAACAGGGCGG
CGACCTCTGCGTTGCGTTACTCTGTTTTTGTTG-GGTAGTTGCTCATAGGCCGGGCCCTAGCACTCAGTGCCAAGTGGAA
GCTGTAGAC-----------------------------------------------------------------------
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>chr3A_562
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----CTTAGAGATGTCGCAGGCACATAATACGCATTGAGGTCACCCGTGCATGC-AGCACCCAGCCCAAACG--------
CCAAAAATAGCACGACTTTTGTTA-GGTGCTAGTCATATGTAG----TCATCAGTATCTGTGTTTATAAAAACAGAACAA
AATCAAAGCTTGTCTGATGATCATAACAAGAGACAAGACAGAGGCACCAACTTAAAAGAATCCCCTAACCTTCATGCG--
--CGTCTTCCTATCACCGCACAATATATTCTTTGTCTCATCGTC---TCTTCTCAG-AAAACACGTTTAGTTGGCCTTCT
CTTCTTA----TAAGCACCCCACC-CCACCCC---ACACCCATCTCCAACCCCAGCTCCTCTT---CTCCTCCTAGCTCA
TTGT-------TCAAACTTCAAACACATATTTTCTGTCTACTCTCTAGTCTCTA--CTTCCTCATTGCCCATAAGCTCCT
--------GTG-------------------------AATGGCGTGCCTGTCCTCCTCGCCGTCCGGCCGGCGCCTGTCGG
AGCTGCTGGAGGAGAGGCAGGAGCCCTTCTCCCTCGACCTCCACCTCCTGGAGAAGGGCTGCTCGGGCCGGCTCCTCGAT
GGCTATGACACCGCCCTGTGCTGGCCAGCCGCAGCCGCCGGCAACGACGCGGCATCCGTGCTCAAGCGACTCACCAGC--
-AAGAAGAAGAAGGCGGCAGCGAGCACCCGTGGTA---------AG------------CAGCAA---CCGGCGGCGGGCT
CCGGGCTCCTCCGGCTGCTGCTCTCCAAGATCCTCCACGGCAAGGCGGCCAACCACAACAAGCCCGCCGCCCTGCAGTGC
TCCGAGTCCTTCAAGAGGGTCGCGCCGTCGCCGTTGCCCTGCTCC---AAGCATCTCGACGCCGTGAAGCTCAGGGCCGA
CGCAGGGGTCGCCGGCGGCC---AGGAGACGGAGTATTCCGACTCCGAGTATGACGACGAGAAGCAGCAGAGCCCCGTCT
CCGTTTTGGAGCACCCGTTCGAGAGCTCTCCTGTCCACGGCCAGAGCAGGTTCTCCTACGTGCAAGACTCGCCCAAGAAC
GCCATGGCCATCGTCCGGGA------GCTCCTCATGGAGATGGAGACGGCGTACACGCCTGCGCTGCGCACCCAGTTGTT
CGCCAAGTCTGAGGACCTCGTCAATGACGCCAACGATCTTGCCGACCACGACGGCG------GCGACGACTACTACTATC
GCACGAGCCCTAAGAATTTCCACGAGGAAGACGGGACCACGGCCGCCGGAAGCCCCGCCGCGAGCGCCGCCTACTGGGCG
ACGCACCGAGCGGAGCTGGCCAGGGTGTCCGAGCTAGTCTCCTCGGAGGTGCCAAGGTCGAGACTGGACGCCGCCAGCGT
GCAGCCGGAGCGACGGGACGTCAGCGCCGACATAGAGACCGCTTTGCTCGATGCTTTGGTGCTGGAGCTCGTCATGGATC
TCGGTGGCTGCTGATCGA--------TGGCGCCCAATCTGCCA--------GTGTAGGTGCAGGACCAAGAACAGAGCGG
CCACCTCTGCG-----TTGCTCTGTTTTTCTTGAAGTAGTTGCTCATAGGCCGGGCCCTAGTACTCAGTGCCAAGTGGAG
GCTGTAGACTGATAAGCAGAAATT--AAATATATTAATTAATTGATTTGTTTTTT-------------------------
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>chr3A_562
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----CTTAGAGATGTCACAGGCACATAATACGCATTGAGGTCACCCATGCATGC-AACACCCAGCCCAAACG--------
CCAAAAATAGCACGACTTTTGTTAAGGTGCTAGTCTTATGTACGTGGTCATCTGTAT----ATT-AACAAAACAGAACAA
AATCGAACTTTGTCTGATGATCATAACAAGAGACAAGACAGAGGCACCAACTTAAAAGAATCCCCTAACCTTCATGCG--
--TGTCTTCCTATCACCGCACAATATATTCTTTGTCTCATCGTC---TCTTCTCATAAAAACACGTTTAGTTGGCCTTCT
CTTCTTA----TAAGCACT---------CCAC---ACACCCATCTCCAACCCCACCTCCTCTT---CTCCTCCTAGCTCA
TTCT-------TCAAAGTTCAAACACATATTTTCTGTCTCTA-------CTCTC--CTTCCTCATTGCCCATAAGCTCCT
--------GCGTCTGTGTTCGTCCTCTTGCGACGCTAATGGCGTGCCTGTCCTCCTCGCCGTCCGGCCGGCGCCTGTCGG
AGCTGCTGGAGGAGAGGCAGGAGCCCTTCTTCCTTGACCTCCACCTCCTGGAGAAGGGCTGCTCGGGCTGGCTCCTCGAT
GGCTATGACACCGCCCTGTGCTGGCCAGCCGCAGCCGCCGGCAACGACGCGGCGTCCGTGCTCAAGCGACTCACCAGC--
-AAGAAGAAGAAGGCTGCAGCGAGCACCCGTGGTACGAAGCGGCAG------------CAGCAG---CCGCCGGCGGGCT
CCGGGCTCCTGCGGCTGCTGATCTCCAAGATCCTCCAGGGCAAGGTGGCCAACCAG---AAGCCCGCCGCCCTGCAGTGC
TCCGAGTCATTCAAGAGGGTCGCGCCGTCGCCGTTGCCCTGCTCC---AAGCATCTCGACGCCGTGAAGCTCAGGGCCGA
CGCAGGGGTCGTCAGCGGCC---AGGAGACGGAGTATTCCGACTCCGAATACGACGACGAGAAGCAGCACAGCCCGGTCT
CCGTTTTGGAGCACCCGTTCGAGAGCTCTCCTGTCCACGGCCAGAGCAGGTTCTCCTACGTACAAGACTCGCCCAAGAAC
GCCATGGCCGTCGTCCGGGA------GCTCCTCATGGAGATGGAGACGGCTTACACGCCTGCGCTGTGCACCCAGTTGTT
CGCCAAGTCTGAGGGCCTCGTCAATGACGCCAACGATCTTGCCGACCACGACGGCG------GCGACGACTACTACTATC
GCACGAGCCCTAAGAACTTCCAAGAGGAAGACGGGACCGCGGCCGCCGGCAGCCCTGCCACCAGCGCCGCCTACTGGGCG
ACGCACCGAGCGGAGCTGGCCAGGGTGTCCGAGCTAGTCTCCTCGGAGGTGCCAAGGTCGAGACTGGACGCCGCCAGCGT
GCAGCCGGAGCGACGGGACGTCGGCGCCGACATAGAGAGCGCCCTGCTCGATGCCTTGGTGCTGGAGCTCGTCATGGATC
TCGGTGGTTGCTAATCGA--------TGACGCCCAATCCGCCA--------GTGTAGGTGCAGGACCAAGAACAGAGCGG
CCACCTCTGTGTTGCGTTGCTCTGTTTTTGTTG-AGTAGTTGCTCATAGGACGGGCCCT---------TGCCAAGTGGAG
GCTGTCGAC----------AAAAATAAAATATATTAATTAATTGATTTGTTCTTTCTTTGAGAAAATTGATTTGTCCTTT
ATGGTTA-------------------------------------------------------------------------
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>chr3D_585
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---------------------------C-ACACAATGAGGTCACTCATGCATGC-AACACCGAGCCCAAACAGGCAAACA
CCAAAAATAGCATGACTTTTGTTAAGGTGCTAGTCATATGTAG----TCGTCTGTAT----A--TAACAAGGCAGAAC-A
AATCGAACCTTGTCTGATGATCATAATC-----------------------------GAATCTCCTAACCTTCATGCG--
--TGTCTTCCTATCACCGCACAATATATTCTTTGTCTCGTCGTC---TCTTCTCAG-AAAACACGTTTAGTTGGCCTTCT
CTTCTTACTTTTAAGCACCCCACGTCCACCAC---ACACCCATCTCCAACCCCACCTCATCTT---CTCCT---AGCTCA
TTGT-------TCAAAGTTCAAACACATAGTTTCTGTTTCTA--------------CTTCCTCATTGCCCATAAGCTCCT
--------GCG-------------------------AATGGCGTGCCTGTCCCCCTCGCCGTCCGGCCGGCGCCTGTCGG
AGCTGCTGGAGGAGAGGCAGGAGCCCTTCTTCCTAGACCTCCACCTCCTGGAGAAGGGCTGCTCGGGCCGGCTCCTCGAC
GGCTATGACACCGCCCTGTGCTGGCCAGCCGCAGCCGCCGGCAACGACGCCGCATCCGTGCTCAAGCGACTCACCAGC--
-AAGAAGAAGAAGGCGGCAGCGAGCACCCGTGGTA---------AG------------CAGCAA---CCGGCGGCGGGCT
CCGGTCTCCTCCGGCTGCTGCTCTCCAAGATCCTCCACGGCAAGGCGGCCAACCAG---AAGCCCGCCGCCCTGCAGTGC
TCCGAGTCCTTCAAGAGGGTCGCGCCGTCGCTGTTGCCTTGCTCC---AAGCATCTCGACGCCGTGAAGCTCAGGGCCGA
CGCAGGGGTCGTCGGTGGCC---AGGAGACGGAGTATTCCGACTCCGAATACGACGACGAGAAGCAGCAGAGCCCAGTCT
CCGTTTTGGAGCACCCGTTCGAGAGCTCTCCTGTCCACGGCCAGAGCAGGTTCTCCTACGTGCAAGACTCGCGCAAGAAC
GCCATGGCCGTCGTCCGGGA------GCTCCTCATGGAGATGGAGACGGCGTACACGCCTGCGCTGCGCACCCAGTTGTT
CGCCAAGTCTGAGGACCTCGTCAATGACGCCAACGATCTTGTCGAGCACGACGGCGACGGCGACGACGACTACCACTATC
GCACGAGCCCTAAGAACTTCCATGAGGACGATGAGAACGCGGCCGCCGGAAGCTCTGCCACCAGCGCCGCCTACTGGGTG
ACGCACCGAGCGGAGCTGGGCAGGGTGTCCGAGCTAGTCTCCTCGGAGGTGCCAAGGTCGAGACTGGACGCCGCCAGCGT
GCAGCCGGAGCGACGGGACGTGAGCGCCGACATAGAGGTCGCCTTGCTCGATGCTTTGGTGCTGGAGCTCGTCATGGATC
TCGGTGGCTGCTAATCGAATAATGGATGGCGCCCAATCCGCCA--------GTGTAGGTGCAGGACCAAGAACAGAGCGG
TGACCTCTA-----CGTTGCTCTGTTTTCGTTG-AGTAGTTGCTCATAGGAAGGGCCCTGGTACTCAGTGCCAAGTGGTG
GCTGTAGAC----------AAAAATAAAATATATTAATTAATTGATTTGTTCTTTCTTTGAAAAAATTGATTTGTTCTTT
ATGTGTTA------------------------------------------------------------------------
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>chr3D_586
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-----------------------------ACACATTGAGGTCACCCATGCATGG--ACACCCAGCCCAAACG--------
CCAAAAATAGCATTACTTTTGTCAAGGTGCTAGTCATATGTAC----TCATCTGTATCTGTATT-AACAAAGCAGAACAA
AATCAAACCTTGTCTGATGATCACAACAAGAGACAAGATAGAGGCACCAACTTAAAAGAATCTCCTAACCTTCATGCG--
--TGTCTTCCTATCACCGCACAATATATTCTTTGTCTCATCGTC---TCTTCTCAG-AAAACACGTTTAGTTGGCCTTCT
CTTCTTA----TAAGCG-----CC-CCACCAC---ACACCCATCTCCAACCCTACCTCCTCTTCTCCTCCT---AGCTCA
TTGT-------TCAAAGTTCAAACACATATTTTCTGTCTCTA--------------CTTCCTCATTGCCCGTAAGCTCCT
--------GTG-------------------------AATGGCGTGCCTGTCCCAGTCGCCGTCCGGCCGGCGCCTGTCGG
AGCTGCTGGAGGAGAGGCAGGAGCCCTTCTTCCTCGACCTCCACCTCCTGGAGAAGGGCTGCTCGGGCCGGCTCCTCGAC
GGCTATGACACCGCCCTGTGCTGGCCAGCCGCAGCCGCCGGCAACGACGCGGCGTCCGTGCTCAAGCGACTCACCAGCAA
GAAGAAGAAGAAGGCGGCAGCGAGCACCCGTGGGAAGAAGTGGCAG------------CAGCAG---CCGGCGGCGGGCT
CCGGGCTCCTCCGGCTGCTGCTCTCCAAGATCCTCCACGGCAAGGCGGCCAACCAG---AAGCCCGCCGCCCTGCAGTGC
TCCGAGTCCTTCAAGAGGGTCGCGCCGTCGCCGCTGCCTTGCTCCTCCAAGCATCTCGACGCCGTGAAGCTCAGGGCCGA
CGCAGGGGTCGGCGGCGGCC---ACGAGACGGAGTACTCCGACTCCGAATACGACAACGAGAAGCAGCAGAGCCCGGTCT
CCGTTCTGGAGCACCCGTTCGACAGCTCTCCTGTCCACGGCCAGAGCAGGTTCTCCTGCGTGCAAGACTCGCCCAAGAAC
GCCATGGCCATCGTCCGGGA------GCTCCTCATGGAGATGGAGACCGCGTACACGCCTGCGCTGCGCACCCAGTTGTT
CGACAAGTCTGAGGACCTCGTCAATGACACCAACGATCTTGTCGACCACGACGGCG------ACGACGACTACTACTATC
GCACGAGCCCTAAGAACTTCCATGAGGACGACGAGACCGCGGCCGCCGGCAGCCCCGCCACGAGCGCCGCCTACTGGGCG
ACGCACCGAGCGGAGCTGGCGAGGGTGTCCGAGCTAGTCTCCTCGGAGGTGCCAAGGTCGAGACTAGACGCCGCCAGCGT
GCAGCCGGAGCGACGGGACGTCGGCGCCGACATAGAGACCGCCTTGCTCGATGCTTTGGTGCTGGAGCTCGTCATGGATC
TCGGTGGCTGCTGATCGA--------TGGCGCCCAATCCGCCG--------GTGTAGGTGCAGGAGGAAGAACATAGCGG
CGACCTCTA-----CGTTGCTCTGCTTTTGTTG-GGTAGTTGCTCATAGGCCGGGCCCTAGTACTCAGTGCCAAGTGGAG
GCTGTAGAC-----------------------------------------------------------------------
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>chr3A_1209
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--------AGACGGCGGCAGGGAGCACCCGTGGTAAGAAGCGGCAG------------CAGCAGCAACGGACGGCGGGCT
CCAGGCTCCTCCGGCTGCTGCTTTCCAAGCTCCTCCACGGCAAGGCGGCCAACCAG---AAGCCCGCCGCCCTGCAGTGC
TCCGAGTCCTTCAAGAGGGTCGCGCCGTCGCTGTTGCCTTGCTCC---AAGCATCTCGACGCCGTAAAGCTTAGGACCCA
CGCAGATGTCGTCGGCGACCAGAAGGAGACGGAGTATTCCGACTCCGAATACGACGACGAGAAGCAGCAGAGCCGTTTTG
A----------------------AGCACTCCTGTCCACGGCCAGAGCAGGTTCTCCTGCGTGCAAGGCTCGCCCAAGAAC
GCAATGGCCATCGTCCGGGAGCTCCTGCTCCTCATGGAGATGGAGACAGCGTACACGCCTGCGCTGCGCACCCAGTTGTT
CGC-AAGTCTGAGGACCTCATCAATGACGCCAACGATCTTGCCGGCCACGACGGCG------ACGACGACTACTGCTATC
GCACGAGCCCTAAGAACATCCACGAGGAAGACGGGACCACGGCCGCCGGAAGCCCCTCCACGAGCGCCGCCTACTGGGCG
ACGCACCGAGCTGAGCTGGCCAGGGCGTGTGAGCTAGTCTCCTCAGAGGTGCCGAGGTCGAGACTGGACGCCGCTAGCGT
GCAGGCGGAGCGACGGGACATCAGCGCCGACATAGAGACCGCCTTGCTCGATGCTTTGGTGCTGGAGTTCGTCATGGATC
TCGGTGGCTGCTAATCGA--------TGGCGCCCAATCCGCCATTGTAGC-GTGTAGGTGCAGGACAAAGAACAGAGCGG
TGACCTCTGCC-----TTGCTCTGTTTTTGTTG-AGTAGTTGCTCATAGGTCGGGACCTAGTACTCAGTGCCAAGTGGAG
GCCTGTA-------------------------------------------------------------------------
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>chr2B_2228
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-------------------------------------------------------------GCCGGTCCCCGCGCAGCCC
TCGGATCGTTCCACGCGCAGTCGTACCATATCTTTCTACCCTTGTCTTTTTCACATCCGCGCGTCCACATCCTAAATGAA
AAAAACCACGAAAACAAAACTATGGCGGCCGCCCACTCCCCCTTCCCCCGCGTCGTGCAGCACGCGGTACCTCCCCTCAT
GCCCAGCCGCCCCCGTCGCTCGTCGTTGACCCTCACCACCGGCACACTCGCCATCGCCAAAATCGCAAACAGAAT-GGTT
CGCTAGTTCCAGCAAAACTGAAGAACAGTTGTAGCAGAAAAATACGCTGGTTCCAGCAAAACTTCAAGATGATGGTAACA
AAAATAACGGATGTTTGTTCCAGCAAAAGTCAGAAGGTAGATAAGAAATAGAAATTATGCTTGCAACAAAAATAAGAAAA
TGGTTCCAGCAAAAGCACTTGCCGCTTCCAGCAAAACTATGAATTATTGTCATTGG----GTTGTAGCAAAA--AAAATC
ATCGCTTCTAGCAAAAAAAA-ATTGCTAGTTCCAGCAAGGATGGATCGC---------CGTCGCACCACGGGTGTCGCTG
GTTCCAGCATTTGTTTTGCTGGTTGCAACTCCACCGGCCTATGGTTGTAGCTCCGCCGAACTAAGGTTGCAGCTCCACCG
CGCCTGGGTAGCAGCATCTCTGCCGACGAATCGCATCAGTGGTTGGTGTCGGCCGCCCCGGTTATAGCCCGTCGTCGCCT
CCCCTCCAAACAGGGGGCTCCGCTGCTTGTAGCACTTGCGTTGGCCGACTTGCAGCACTTG
>chr3B_2238
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-----------------------------------------------------------------------GCGCAGCCC
TCAGATCATTCCACACGCAGTCGTACGATATCTCTCTCACCTTGTCTTTTTCACATCCTCACCTCCACATA-TAAACGAA
AAAAACCACGAAAACAAAACCATGGCAGCCGCCCACTCCCACTTCCCCTGCACCGTGCAGCACGCGGTACCTCCCCTCAT
GCCCAGCCGCCCCCGTCGCTCGTCGTCAACCCTCACCACCGGCACACTCGCCATTGCCAAAATCACAAACAAAAA-GGTG
CGCTGGTTCCAACATAACTGAAGAACAGTTGTGGCA-AAAAATACGCTGGCTCCAGCAAAACTCCAAGGTGATGGTAACA
AAAATAACGGATGTTTGTTCCAGCAAAAATCAAAAGGTAGATAAGAAATAGAAATAATGCTTGCAACAAAAA-AAGAAAA
TGGTTCCAGCAAAAGCACTTGCCGCTTCCAGCAAAACTATGAATTATTGTCACTGG----GTCGTAGCAAAA--CAAATC
ATCGCTTCCAGCA-AAAAAA-ATTGCTGGTTCCAGCAAGGATGGATCAC---------CGTCGCACCACGGCTGTCGCCG
GTTCCAGCATTTGTTTTGTTGGTTGCAACTCCACCAGCCTATGGTTGTAGCTCCGCCGAACTAAGGTTGCAGCTCCGCTG
CGCCAGGGTAGCAGCATCTCCGCCGGCGAATCACATCAGTGGTTGGCGTTGGCCGCCCAGCTTGTAGCCCGTCGTTGCCT
CCCCTCAAAACAGGGGGCTCCGCTGCTTGTAGCACTTGCGTTGGCCGATTTGCAGCACTTG
>chr6B_2238
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-----------------------------------------------------------------------GCGCAGCCC
TCGGATCGCTCCACACGCAGTCGTATGATATCTCTCTACCCTTGTCTTTTTCACATCCGCGCGTCCACATCCTAAACGAG
AAAAACCACGAAAACAAAACTATGGC-GCCGCCCACTCCCCCTTCCCCTGCGTCGTGCAGCACGCGGTACCTCCCCTCAT
GCCCAGCCGCCCCCGTCGCTCGTCGTCGACCCTCACCACCGGCACACTCGCCATCGCCAAAATCGCAAACAGAAA-GGTT
CGCTAGTTCCAGCAAAAGTGAAGAACAATTGTAGCAGAAAAATACGCTGGTTCCAGCAAAACTTCAAGATGATGGGAACA
AAAATAACGGATGTCTGTTCCAGCAAAAATCAGAAGGTAGATAAGAAATAGAAATTATGCTTGCAACAAAAA-AAGAAAA
TGGTTCCAGCAAAAGCACTTGCCGCTTCCAGCAAAACTATGAATTATTGTCACTGG----GTTGTAGCAAAA--AAAATC
ATCGCTTCCAGCA-AAAAAAAATTGCTGGTTCCAGCAAGGATGGATCGC---------CGTCGCACCACGCGTGTCGCTG
GTTCCAGCATTTGTTTTGCTGGTTGCAACTCCACCGGCCTATGGTTGTAGCTCCGCCGAACTAAGGTTGCAGCTCCACCG
CGCCTGGGTAGCAGCATCTCTGCCGGCAAATCGCATCAGTGGTTGGTGTCGGCCGCCCCGCTTATAGCCCGTCGTCACCT
CCCCTCCAAACAGGGGGCTCCGCTGCTTGTAGCACTTGCGTTGGCCGACTTGCAGCACTTG
>chr2D_2413
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----------CCCCGTCGCTCGCCGTTGACGCTCACCACCGTCAGGCTCGCCATCGTCAAAATCTCAAACAAAAAAGGTG
TGTTGGCTTCAACACAACTGAAGAACAGATGTAGCAG--AAAAACGCTGGTTCCGGCAAAAATCCAAGACGATGCTAACA
AAAACAATGGATGTTTATTCTAGCAAAA-TCAAAACGGTGATAACAAAAAGAAATCATGCTTGCAACAAAAA-AAGAAAA
TGGTTCTATCAAAAGTACTTGCCGCTTCCAGCAAAACTATGAATCATCGTCGCTGGGGTCGTAGCAAAAAAA--AAAATC
GCTGCTTCCAGCA-AAAATT-TTTGCTGGTTCCAGCAATGATGGATCGCTGCCGTGACCATCACAACACGGTTGTCGCCG
GTTCCAGCATTTGTTTTGCTGGTTGCAACTCCACCGGCCTACGGTTGTAGCTCCGCCGAACTACGGTTGCAGCTCCGCCG
CGCAGGGGTAGTAGCATCTCCGTCGGCGAATCGCATCGGTGGTTGGCAGTGGCCGCT-CGCTTGTAGTCCATGGTCGCCT
CCCCAAAAAACACGGGGCTCCGCTACTTGCAGCAC--------------------------
>SNPs
SSS----------SS----SS-------S------S----------S---------------------------------
-SS---------SSS---SS-SS--S-S----------------S----S---S--------------------------
------S------------------------------------------------S-------S----SS-S-------S
----------S--S---------S----S-----S-----S----------------S-----S----------------
----------S-------SS--S------S----------SSSSSS------S-------S---S----S-----S----
-S----------------S-SS-----------------SSSSS---S--S---------S--S----S-----SSSS--
---S-SS------SS---S-------SS-SS---S-----------S----S--S-----S--S-S--------S---SS
SSSS---------------S-----SS-------------------------S-S-------------------------
----------------------------------------------------------------------------S---
-----------------------------SSSSSS-S--S---S--S------------------------------SSS
SS---------S---SS------S-----------------S-S---------S---------------S----------
--------------------------------SSS------------------------------------S--------
----SSSSSSS-------------------------------SS-----------------------------------S
SSSSSSSS-------------------------------------------------------S----------------
------------------------------------------------------------------S-------------
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-----------------------------------------S------------------S-------------------
---------------------------------------------------S-----S----------S-----------
-------------S-------S-------------------------------------S--------------------
---------------------------------------------------------S----------------------
-------------------------------S-------S----------------------------------------
---------------------------------------S----------------------------------------
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------------------------------------------------------------------------------S-
-------------------------------------------S-SSSS-S-----------------------------
------------------------------------------------------------S-------------------
--------------------------------------------------------------------SS----S-----
---S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----SS-S----------
--------------------S--------------------------------------S--------------------
---------S----------------------------------------------------------------------
------------------------------------------------------S-------------------------
------------------S-------------------------------------------------------------
--------------------------S------------S----------------------SS-SS-----S-------
--S---------------------------------------------------------------------SS------
-----------S------------------------------S-------------------------------------
------S----------------------------------------------S--------------------------
-------------------------------------------------------S------------------------
-S--------S-----------------------------S--------------------
>forward_269
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---------ACTGTTGTGGCGTTGGTGTA---------------------------------------------------
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>reverse_2131
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--------------------------------------------------GGTGTAGGTGCAGGACGAAG----------
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