>input_sequence_64020
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----------------------------------------ATGGAGTGGGTAGCAGAGCAGCAGGATCTGGGTGGCCTCG
GGCTCGCCGGCATCTGCCGCGAGGTCGCCCGAGTACTCTGCGCCACCATCTTCAA---CTCCTGCTTAGGTCTCCTTATG
CTGCTCTCCCTGATCTTGCCCTGCGCCAACCACGTCCTTAGCTCCCGCGTCGACTCCAACCAAGGCAGCCTCCTCCGCCT
CGCTGCGTACTGGGCCGCCTTACTTCTCTTCAAGCTCCTCTACTTCGTTCTCTGCTACGCGCTCACGCTCTTCTGCACCT
GCGCCTACGTGTTCCTAGTCGCCTCTCTCTATTGCACCGGCGGCGATTTCGCCGCCGCCAATCGCGGCCTCCACGCCCTC
CCACTCGATCCAGGCAGGCGGCTTCATCGCACCTTCTTCTTCCTTGCAATCCCTCTACTCATCACATTCTACGCCGGCGC
GCAAGCCTGGATCGCGCTCCAGCACCTGGACGCTCCGCGCGGGGTCATCCTGCCGCTGCAGCTGATGGGCGGGGCCGCGT
GCCTTGCCGGCGCCGGCTACGTCACCGTCGTCTGCCAGCTGGCCTGCGTGGTCTCCCTCCTCGAGGACCCCAGGCTCCTC
GCCGCCGTACGCAGGAGCCGCGCGCTCCTCGCAGGCAAGTTCTGGCCGGCGGCGGCCATCTTCCTCACGCTCGACGCCTG
CATCGTGGCTCTGCTCATGGCCTACACGCCTCTGGTGGTGGTGATGGACGACGCGCTGGGGCTGGGTATCGCTTTCCCGC
TGGCTGCGGGAGTTGGGATGACAGTCGCTCTGTGGGCGGCGCTCGTCGTCACGCTGGTGGCGCAGCCGGTAGTGTACCTG
GTCTGCAAAAACCACCACCACAAGATCGTTGACAAGGTCCACCTCAACTACGTCGGAGACTACGAGCGGCTCGCCGTCGA
CGGCGACAATGCTGGCGTGGAGCTGCAGCCGGCGCCGCAGGTCACTACAACTGCCTAG----------------------
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>chr1A_1_TraesCS1A01G081700
GTGCCTAGAGCTGGCACGGGGGGCTCGGCTACGGCAGTATGCTGGGACGCCAGTGGTATGTTTCTGGGCAGCTCGGCTGT
GGTCATCTATGAAGTCACTGACGTTGCAACTTTGGAGGCGATTGCATGTCGTGGGGCCTTATCACTAGTTGAAGATCTCC
TGCTCCATAATTTTGTGGTTGCCTCCGACTCAAAAATAGGTGATCAGTGATATAGACAAGGGCATAAGCAGCAGCAATGC
ATGTATAATCAGACAGATCAAGCAACGACCGATAAATGTTAATTGCATTTTCTCGCTTGAAGGCCGAGCAAGGCCGAGCA
ACGAATAAAGATGCAGATATTCTAGCTAAATTCTTGAATTGTTTGGACGAGGGGCGCCATGTGTGATTCCAACCCCACGA
TCCACTTTGTATTCCACTTCATGTGTTTTTGATCAATAAGTTTAGCTTTATCCCTAAAAGAATGTAATCTTGCTCCATGC
GTTAAAATGTATATATCATCTGTGTAGATTATCATCCAAACAACTCTTTTTTAAGGATTATTTATTCTCATTATTTTTGT
ACTATATATAGTACAAAATTTCGTCAAACAAGCCGGCGCATGCCCGGATGTCCACAGATATTTTATGAGGTCTGTTTAAT
GATCTGCTTGCTCCGTCCTTCAAAGAGTGTATTTCCAACTTTGAAGGATCAAACTATCTCAAAGTTTTGGTCGAGTTTGT
GCAAAAAATATATCAATGTTCATAAAACCAAATAAAAGTACGAAGAAAATATATTTTATTATCAATCCAATGCTACTAAT
TTGATGGCATAAATGTTGACGTACTGTTGTAAAGCTTTGGAAATTTCTCGCCAAGGAGGATATCTCCACTCCACGCGATG
TGGCGTGGCGTCTGTTAAATAGTCCTTATTTTCTCCACTTTTGTCTTCGGTAGTCGACTTGTTTCCCCACCAGCACCATC
ACCACCACCGCCATCAATCCATCACCACCGTGTTCGATCGATGGAGTGGGTAGCAGAGCAGCAGGATCTGGGTGGCCTCG
GGCTCGCCGGCATCTGCCGCGAGGTCGCCCGAGTACTCTGCGCCACCATCTTCAA---CTCCTGCTTAGGTCTCCTTATG
CTGCTCTCCCTGATCTTGCCCTGCGCCAACCACGTCCTTAGCTCCCGCGTCGACTCCAACCAAGGCAGCCTCCTCCGCCT
CGCTGCGTACTGGGCCGCCTTACTTCTCTTCAAGCTCCTCTACTTCGTTCTCTGCTACGCGCTCACGCTCTTCTGCACCT
GCGCCTACGTGTTCCTAGTCGCCTCTCTCTATTGCACCGGCGGCGATTTCGCCGCCGCCAATCGCGGCCTCCACGCCCTC
CCACTCGATCCAGGCAGGCGGCTTCATCGCACCTTCTTCTTCCTTGCAATCCCTCTACTCATCACATTCTACGCCGGCGC
GCAAGCCTGGATCGCGCTCCAGCACCTGGACGCTCCGCGCGGGGTCATCCTGCCGCTGCAGCTGATGGGCGGGGCCGCGT
GCCTTGCCGGCGCCGGCTACGTCACCGTCGTCTGCCAGCTGGCCTGCGTGGTCTCCCTCCTCGAGGACCCCAGGCTCCTC
GCCGCCGTACGCAGGAGCCGCGCGCTCCTCGCAGGCAAGTTCTGGCCGGCGGCGGCCATCTTCCTCACGCTCGACGCCTG
CATCGTGGCTCTGCTCATGGCCTACACGCCTCTGGTGGTGGTGATGGACGACGCGCTGGGGCTGGGTATCGCTTTCCCGC
TGGCTGCGGGAGTTGGGATGACAGTCGCTCTGTGGGCGGCGCTCGTCGTCACGCTGGTGGCGCAGCCGGTAGTGTACCTG
GTCTGCAAAAACCACCACCACAAGATCGTTGACAAGGTCCACCTCAACTACGTCGGAGACTACGAGCGGCTCGCCGTCGA
CGGCGACAATGCTGGCGTGGAGCTGCAGCCGGCGCCGCAGGTCACTACAACTGCCTAG----TCCAGTCCAGTGAGTCCA
CGGCCCCCAGACCCTAGCCTGCAGTGCTACTCCTCTATTCATTCTTGGATTTAAGAGACAAGTACTTAAAAGTACTCCGT
ACTACCTATCATGTGTTTTAACTGAGACAATTAGTAAGTGCGGTAGCTACCTCCATCACAGTTTGAATGTATTATATTAG
TCGTATGAAATTCTACATCTCATCCGATTCCGATTATGGCACATCATGTGTGTTTGATTCTTGTATATGTTTGTGTGACA
CTGTGAGCTAGTATAATATAATTGTTGAGCCTATTAACTAGGAGTACTCCCTCTGTTTTTATTTACTCCGTATATTAGTT
TTGACTGAGTCAAATTTTATAAAA----TTTGATCAAGTTTGTAAAAAAGGATAAAAACATTTACACTAGGAAATCTATA
TGATGTGAAACTATATTCAATAATGAATCTTGTAGTATTGATTTGGTGGTACAGTTTTCTACAAAGTTGATGAAAGTTTA
TAAATTTTGACTTTAGGCAAAGGTATTTATATGCATAGTAAATAAAAATGAAGGGATACGTGCATTATTTGTCCCATCTG
TCCCATTTTCGCTTCGTCGAGAAAATTCATACATGAGTAGAATATATATATATACTCGGCTAGTTTGGGAATTGTCTGAT
TTTTAAAATATGTTTAGACATACGTACATGGATTCGAAAGGGAAAATATCGTGTGTTCATGGCTAAAACGGCATGGATGT
CGTTTTGCAGTGGCAGAAAGATAAGCACATGCTAGTTGTCCGGTCCGGTCCGATATTTGCGTATCGATGCGTGCTCCGTC
CTCCTTGATCATCAACCGCTTCAGCGTTTGGCCACCTTCCATCATGCCTCTCTCCATCTCCGGTCGCTCATAGTATGCGC
TGCTCATTGGCATTATCAGTAGCGGGTTTCCGTTCCCGGCAATCGTACGTCGACTCAAGATAGCGAGAAGGTCAAATAGT
CAGGACGCGGTTGGCCGGCGAACCTG
>chr1B_1019
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----------------------------------------------------------CAGCAGGATCTGGGTGGCCTCG
GGCTTGCCGGCATCTGCCGCGAGGTCACCCGAGTCCTCTGCGCCACCATCTTCAATTCCTCCTGCTTAGGTCCC---ATG
CTGCTCTCCCTCATCTTGCCCTGCGCCAATGACGTCCTTAGCTCCCGCGTCGACTCCAACCAAGACAGCCTCCTCCGCCT
CGCCGCGTACTGGGCCGCCTTACTTCTCTTCAAGCTCCTCTACTTTGGTCTCTGCTACGTGTTCACGCTCTTCTGCACCT
GCGCCTACGTGTTCCTAGTCGCTTCTCTCTATTGCACCGGCGGCGATTTCGCCGCCGCCAATCACGGCCGCCACGCCCTC
CCAGTCGACCCGTCCAGGCGGCTTAATCGCACCTTCTTCTTCCTCGCAATCCCTCTACTGATCACATTCTACGCCGGCGC
CCAAGCCTGGATCGCGCTCCAGCAGCTGGACGCTCCGGGCGTGGTCACCCTGCCGCTGCAGCTCATGGGCGGGGCCGCGT
GCCTTGCCGGCGCCGCGTACGCCGCCGTCGTCTGCCAGCTGGCCTGCGTGGTCTCCCTCCTCGAGGACGCCTGGCTTCTC
ACCGCCATACGCAGGAGCCGCGCGCTCCTCGCCGGCAAGTTCTGGCCGGCGGCGGCCATCTTCCTCACGCTCGACGCCTG
CATCGTGGCTCTGCTAATGGCCTACACGGTTCTGGTGGTGGCGGTGCGCGACGCGCTGGGGCTGCGTCTCGCTTTCCTGC
TGGCTGCGGGAGTTGGGATGACAGTCGCTCTGTGGGCGGTGCTCGTCGTCACGCTGGTGGCGCAGCCGGTGGTGTACCTC
GTCTGCAAGAACCACCACCACGAGGTCGTTGACAACGTCCACCTCAACTACGTCGGAGAGTACGAGCGGCTCGCCGTCGA
CGGCGACAATG---GCGTGGAGCTGCAGCCGGCGCCGCAGGTCACTACAACTGCCTAGTCCATCCAGTTCAGTGAGTCCC
CGGCCCCCAGACCCCAGCCGGCAGTACTACTACTCTATTCATTCTTGGATTTGAGAGACAA----TTAAAAGTACTACTC
CTATGTTT--------------TGAGACAATTAGTAAGTGCGTTAGCTACCTTCATCACAGTTTGAATGTATTAGTCGTA
TGATGA------CTACATCTCATCCGATTT------TGGCACATCATGTGTGTTTGGTTCTTGTATATATTTGTGTGACG
CTGTGAGCTAGTATAAT-----TGTTGAGCTTATTAACTTTAGTAGTACTCTC---TTTTATTTACTCTGTGTATTAGCT
TCGATTGGCGTTAAATTTTACTATAAGGTTTGATCAAGTTTGTAGAAATTGATATAAACATTTATAATAAAAAATCATTA
TGATGTGAAAATATACTCAATAATGAATCTA-TAGTATTGATTTGGTGGT------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------
----S---------------------S-------S-------------------------------------S-SSS---
-----------S-----------------SS---------------------------------S---------------
---S-----------------------------------------S-S-----------S-S------------------
----------------------S----------------------------------------S-----S----------
---S----S--SSS----------S-------------------S--------------S--------------------
S-----------------------S------------S---S-----S---------------S----------------
---------------SS----S-S--------------------------------------------S--S----S---
S-----S-------------------------S-----------------------------------------------
---------------S------------SS-----------S-S--SS----------------S--S---------S--
---------------------------------------S------------------------------S--------S
--------S------------S--S----------S-----------------------S--------------------
-----------SSS------------------------------------------------------S----------S
--------------S----S-----S-----S--------------------S--------SSSS-----------S-SS
SSSSSS-SSSSSSSSSSSSSSS--------------------S---------S---------------------SSSSSS
-SS-SSSSSSSS-----------------SSSSSSS--------------------S-----------S----------S
-----------------SSSSS--------S--------SSSSSSSSS-S---SSS------------S--S------S-
-S--S--SSSSS--S---SSSS-S--------------------S---SS----S---------S-S--SS-----SS--
----------S----S--------------SS------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_405
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-----------------------------------------------------------------ATTCCAACCCCACGA
TCCAC---------------------------------------------------------------------------
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>reverse_1710
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-----------------------------CTCTGGTGGTGGTGATGGAC-------------------------------
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>forward_1017
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-------------------------------------TCGATGGAGTGGGTAGCAGA-----------------------
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>reverse_2561
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TCCCATTTTCGCTTCGTCGA------------------------------------------------------------
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