>input_sequence_64016
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-----------------------------------------------------AGTAAGCCTGTCCAGCTCTACTCTCAT
TTCTGCTCTTTTTGTTTCAAACAAATTTTAACACGCCCAGGTCAGCTAGTATCATGAGTGGCAAACGAGAAAAAGAAACC
AGAGTCAGCTTTTGATCGGATTTCGCTTGAAATTAACTGCAGTGGGATCGGAGCAGGAGAAGAAGGCCGCCGCCACGGTG
GAAGTGGAAGGCATCCCGTTCCCGCGGGAAATCGCCGGCGCCAAGACGCTCTCGCTCGTCGGCCATGGCAAGCACTAGAA
TCTCTGACTGAA-GAACAGACACGAACGAATCATTTT---TTTTTTTTTGACACAATCAAGTTCAACTTCAACGTGCAGG
CGTCACAGACATTGAGATCCATTTCCTTCAGATCAAGTTCAACGCCATCGGGGTCTACCTCGACGTCGACGGCGCCATGG
AGCATCTGCAGGGCTGGAAGGGGAAGAGCCAGCTGATGGAGGACGAGGCTTTCTTCGACGCCCTGGTCTCCGGTGAGACG
ATGGATGGATGATAATCGACCTCCAACAAGTGACGCTGGTCATATGTTTCTGACACGATGTTGCGCGTGCATTTGCAGCT
CCGGTGGAGAAGGTGCTGAGGGTGGTGGTGATCAAGGAGATCAAGGGGTCGCAGTACGGCGTGCAGCTCGAGAGCTCCGT
CAGGGACCGCCTCGTGGCAGCGGACAAATACGAGGACGACGAGGAGGAGGCGCTCGAGAAGGTCTCCGACTTCTTCCAGT
CCAAGTACTTCCGGCCCGGCTCCGTCGTCACCTTCCACTTCCCGGCCACGGTCACCGCCGCGCCAGAGATATCGTTCGTG
ACGGAAGGCAAGGAGGAGGCCAAGGTGGCGGTGGAGAACGCGGCCGTGGCGGAGATGATCCAGAGGTGGTACCTTGGCGG
CGATTCGGCGGTGTCGCAGACCACCGTCAGGAGCATCGCTGATAGTTTCGCGGCAATGCTCACCTCACCATGA-------
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>chr5B_1_TraesCS5B01G145800
GTAAAAAGAGAAGAAAACAACAGCCCCCTCAAAGCTTCATCTAAAAAAAGCTCTCTCTTCTTTCTATTAGGAGGACCAGC
TGAGCATTCCTCGTGTTTCTGGGAGGTTAAAATACCAAGGGCATTTACGCGAAAGAAAAAACTAGTATAATAGGACGGCA
AATTTGAAAAATTTGACCTGTGAATGAAATCAAATCGCAAAATGAACTGCCCGTGAAACTATTTCACGCGGTTGACCTTT
TTGTGTGATGCCCGACACGAAGGCGTTACACTACACTGTGCAACGCCTCACAGATAGGCGCTACACGCCTGGCCAGCGTT
GCATCCTAGACTGCCTAAAAATTGCTAAGTCAATGTGCAGAGCCTAAGAGCTAGGCGCTGCACTGTATAGTGGGGCGCCT
AGCTCTCAGGCGCTGCACTAGTGGTTGCACTACAAAATGAAGCAACCACTAGTGCAATGCCTAGAAGCTAGACGCTACAC
TGTATAGTGTGGCGCCTAGCTCTCAGGCGCTGCACACTGACTTAGTAATTTTCGGATCACATGGGTGCGACGCTGGAC-A
GGCGTGTAGCGCCTATCTGTGAGGCATTGCACAATGTAGTGTGGCGCCTTCGTATCAGGCGTCACACAAAAAGATCAACC
GCGTGAAATTGTTTCACGGATAGTTCATTCTGTGATTTGATTTCGTCCATAGGTCAAATTTATCAATTTTGCCTAACAGG
ACCATTTGCGTGAACGATTGTTGACCACGAGATGCACCTAACC----------CCCTAAACCCTCCGCTGTTTGTTTGGA
CGCTTACTTCAG--TGGTAGTTGTATCTCACAGTCTCAGTACAGCCACATGTCCACTCCTGCTATTCCCACCTACCCCTA
CTCCCACCCCCATCGCACGGAAGCACGACGATAAAACGCCCACGCTCTTCCATCTCTGCCATAACAAACGCAAAGCTGCT
CCATCATCTTCCTCTTTGTTTCTCTTTCATCTGTTGACCTCTGCAAGAAAACAAGTAAGCCTGTCCAGCTCTACTCTCAT
TTCTGCTCTTTTTGTTTCAAACAAATTTTAACACGCCCAGGTCAGCTAGTATCATGAGTGGCAAACGAGAAAAAGAAACC
AGAGTCAGCTTTTGATCGGATTTCGCTTGAAATTAACTGCAGTGGGATCGGAGCAGGAGAAGAAGGCCGCCGCCACGGTG
GAAGTGGAAGGCATCCCGTTCCCGCGGGAAATCGCCGGCGCCAAGACGCTCTCGCTCGTCGGCCATGGCAAGCACTAGAA
TCTCTGACTGAA-GAACAGACACGAACGAATCATTTT---TTTTTTTTTGACACAATCAAGTTCAACTTCAACGTGCAGG
CGTCACAGACATTGAGATCCATTTCCTTCAGATCAAGTTCAACGCCATCGGGGTCTACCTCGACGTCGACGGCGCCATGG
AGCATCTGCAGGGCTGGAAGGGGAAGAGCCAGCTGATGGAGGACGAGGCTTTCTTCGACGCCCTGGTCTCCGGTGAGACG
ATGGATGGATGATAATCGACCTCCAACAAGTGACGCTGGTCATATGTTTCTGACACGATGTTGCGCGTGCATTTGCAGCT
CCGGTGGAGAAGGTGCTGAGGGTGGTGGTGATCAAGGAGATCAAGGGGTCGCAGTACGGCGTGCAGCTCGAGAGCTCCGT
CAGGGACCGCCTCGTGGCAGCGGACAAATACGAGGACGACGAGGAGGAGGCGCTCGAGAAGGTCTCCGACTTCTTCCAGT
CCAAGTACTTCCGGCCCGGCTCCGTCGTCACCTTCCACTTCCCGGCCACGGTCACCGCCGCGCCAGAGATATCGTTCGTG
ACGGAAGGCAAGGAGGAGGCCAAGGTGGCGGTGGAGAACGCGGCCGTGGCGGAGATGATCCAGAGGTGGTACCTTGGCGG
CGATTCGGCGGTGTCGCAGACCACCGTCAGGAGCATCGCTGATAGTTTCGCGGCAATGCTCACCTCACCATGATTCTTTT
TTT------------------------ACAAGTGCTGCTTACCTGCTTTTGCAATAAATCGATAAGTCACGATGAAATAT
TTCAAAAAACACTTGCTGGC-GAAGCCCTACCGGTCCTTTGGCAACTCGATCCAAACGCTGTA---CA---AATTATTTC
TAAAATTTTC-ATAAATAACACTTTATT---------ATTTAAATATTACACCCGGTCTCTGAATAATTAAGATGCACAC
GGCCAAATCAAATTCAGTCTC--AG--AAAGAGAAAAAAAAGGACAAAATACAGGTATTCATGAA--GAGACTGGATGAC
GCCTAAACCGTTGAAGGGC-----CAATCCTAATATCATGCTACCATCCATGTGGGGTAGAAGTA-----------GTTT
TCTAAGCGTGTACACATATCTGTAAACAAGACTCGATTCTTCACACATTGTAGAGACGAGCATA----GAGCGTACTGGT
ACATCTGTAGATAACCTGCAAAAGGGAAGTACTTTTATGGTT-AAATACCTT--------------GCCAAAGCGACCAA
ATAACAACAAACGCTCCCATCATGAGAAGAATTTTAAACCTGTACTTTATCCCATGTAACCAGTTGTCAAATATATTAGC
AACACTACCTGAAGGATACAAGCCAGAAACTACTTGGATGACTAACCATATAAAACGAGCCAATTTGCATTGGAAAA-CA
--AGTGTTTTATTGTTTTGTCGTGATGAC-AAAAACACATTGCGTACTTTCATGCCAATTCTTCTTAATAAGGTTGTACT
TGGTAAGAATGA---CTTCTCG---ACGAAGATACCACGCAAAGATTTTATTCTTAAGCGGTATCATCATCTTCTAAATC
TTCTTATTCTTATCAACTGGCACATGTGACTAGATCAAAGCACTATACATATAATCCACTGTGAATTTACCATTCACGTG
TAGGTTCCACTGAAATTCATCGGCTCCCAGTAACAGTAGTACCGTGTATAGTCTTAGTAACAAAGTGTTTCACGACTCAA
GTCTAGGGCCAATTAGATCTCTTCTGAATGTCACATTTGACATAA
>chr4D_141
ACTAGTACTACTAGCAG---------------------------------------------------------------
----------------------------------------------------------------------------GGCA
AATTTGACAAATTTGACCTGTGGACGAAATCAAATCACAAAATGAACTGCCCGTGAAACTATTTCACACGGCTGACCTTT
TTGTGTGACGCCCGACACGAAGGCGCCACACTACACTGTGCAATGCCTCACAGATAGGCGCTACACGCCTGGCCAGCGTT
GCACCCCAGACTGCCTAAAAATTGCTAAGTCATTGTGCAGAGCCTAAGAGCTAGGCGCTGCACTGTATAGTGTGGCGCCT
AGCTCTCAGGCGCTGCACTAGTGGTTGCACTACAAAATGAAGCAACCACTAGTGCAACGCCTAGAAGCTAGGCGCTACAC
TGTATAATGTGGCGCCTAGCTCTCAGGCGCTGCACACTGACTTAGTAATTTTCAGATCACACCGGTGCGACGCTGG-CCA
GGCGTGTAGCATCTATCTGTGAGGCATTGCACAGTGTAGTGTGGCACCTTCGTGTCGGGCGTCACACAAAAAGGTCAGCC
GCGTGAAATAGTTTCACTGGCAGTTCATTCTGTGATTTGATTTCGTCCATAGGTCAAATTTGTCAATTTTGCCTACTAGG
A-------------------------------------------------------------------------------
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>chr5D_150
ATAGGAGA------------------------------------------------------------------------
-----------------------------------------------------------------------------GCA
AATTTGACAAAATTGACCTGTGGACGAAATCAAATCACAGAATGAACTGTCCGTGAAACTATTTCACGCGGCTGACTTTT
TA-TGTGACGCCCGACACGAAGGCGTCACACTACACTGTGCAACGCCTCACAGATAGGCGCTACACGCCTGGCCAGCGTT
GCACCCCAGACTGCCTAAAAATTGCTAAGTCATTGTGCAGAGCCTAAGAGCTAGACGCTGCACCGTATAGTGTGGCGCCT
AGCTCTCAGGCGCTGCACTAGTGGTTGCACTACAAAATGAAGCAACCACTAGTGCAACGCCTAGAAGCTAGGCGCTACAC
TGTATAGTGTGGCGCCTAGCTCTCAGGCGCTGCACACTGACTTAGTAATTTTCGGATCACACGGGTGCGACGCTGG-C-A
GGCGTATAGCGCCTATCTGTGAGGCGTTGCACAGTGTAGTGTGGCGCCTTCGTGTCGGGCGTCACACAAAAAGGTCAGCC
GTGTGAAATAGTTTTACGGGCAGTTCATTCTGTGATTTGATTTCGTCCATAGATCAAATTTGTCAATTTTGCCTCATAGG
A-------------------------------------------------------------------------------
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>chr1D_156
--------------------------------------------------------------------------------
---------------------------------------------------------------------------CGGCA
AATTTGACAAAATTAACCTGTGGACGAAATCAAATCACAGAATGAACTGTCCGTGAAACTATTTCACGCGGCTGACCTTT
TTGTGTGACGCCCGACACGAAGGCGTCACACTACACTGTGCAACGCCTCACAGATAGGCGCTACACGCCTGGCCACCGTT
GCACCCCAGACTGCCTAAAAATTGCTAAGTCATTGTGCAGAGCCTAAGAGCTAGGCGCTGCACTGTATAGTGTGGCGCCC
AGCTCTCAGGCGCTGCACTAGTGGTTGCACTACAAAATGAAGCAACCACTAGTGCAACGCCTAGAAGCTAGGCGCTACAC
TGTATAGTGTGGCGCCTAGCTCTCAGGCGCTGCACACTGACTTAGTAATTTTCGGATCACACGGGTGCGACGCTGG-CCA
GACGTGTAGCGCCTATCTGTGAGGCGTTGCACAGTGTAGTGTGGCGCCTTCGTGTCGGGCGTTACACAAAAAGGTCAGCC
GCGTGAAATAGTTTCACGGACAGTTCATTCTGTGATTTGATTTCGTCCATAGGTCAAATTTGTCAATTTTGCCT------
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>chr6D_156
--------------------------------------------------------------------------------
---------------------------------------------------------------------------CGGCA
AATTTAACAAATTTGACCTGTGGATGAAATCAAATCACAGAATGAACTGCCCGTGAAACTATTTCACGCGGTTGATCTTT
TTGTGTGACGCCCGACACGAAAGCGCCACACTACACTGTGCAACGCCTCACAGATAGGCGCTACATGCCTGGCCAATGTT
GCATCCTAGACTGCCTAAAAATT-CTAAGTCATTGTGCAGAGCCTAAGAGCTAGGCGCTGCACTGTATAGTGTGGCGTCT
AGCTCTCAGGCGCTGCACTAGTGGTTGCACTACAAAATGAAGCAACCACTAGTGCAACGCCTAGAAGCTAGGCGCTACAC
TGTATAGTGTGGCGCCTAGCTCTCAGGCGCTGCACACTGACTTAGTAATTTTCGGATCACACGGGTGCGACGCTGG-CCA
GGCGTGTAGCGCCTATCTGTGAGGCGTTGCACAGTGTACTGTGGCGCCTTCGTGTTGGGTGTCACACAAAAAGGTCAGCC
GCGTGAAATAGTTTCACGGGCAGTTCATTCTGTGATTTGATTTCGTCCATAGGTCAAATTTGTCAATTTTGCC-------
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---------------------------------------------
>chrUn_156
--------------------------------------------------------------------------------
---------------------------------------------------------------------------CGGCA
AATTTGACAAATTTGACCTGAGGACGAAATCAAATCACAGAATGAACTGTCCGTGAAACTATTTCACGCGGCTGACCTTT
TTGTGTGACGCCCGACACGAAGGCGCCACACTACACTGTGCAACGCCTCACAGATAGGCGCTACACGCCTGGACAGCGTT
GCACCCCAGACTGCCTAAAAATTGCTAAGTCATTGTGCAGAGCCTAAGAGCTATGCGCTGCACTGTATAGTGTGGCGCCT
AGCTCTCAGGCGCTGCACTAGTGGTTGCACTACAAAATGAAGCAACCACTAGTGCAACGCCTAGAAGCTAGGCGCTACAC
TGTATAGTGTGGCGCCTAGCTCTCAGGCGCTGCACACTAACTTAGTAATTTTCGGATCACACGGGTGCG-CGCTAG-CCA
GGCGTGTAGCGCCTATCTGTGAGGCGTTGCACAGTGTAGTGTGACGCCTTCGTGTCGGGCGTCACACAAAAAGGTCAGCC
GCGTGAAATAGTTTCACGGACAGTTCATTCTGTGATTTGATTTCATCCATAGGTCAAATTTGTCGATTTTGCCAAC----
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---------------------------------------------
>chr2A_156
--------------------------------------------------------------------------------
---------------------------------------------------------------------------CGGCA
AATTTAACAAATTTGACCTGTGAACGAAATCAAATCACAGAATGAACTGCTCGTGAAACTATTTCACGCGGCTGACCTTT
TTGTGTGACGCCCGACACGAAGGCGTCACACTACATTGTGCAACGCCTTACAGATAGGCGCTACACGCCTGGCCAACGTT
GCACCCCAAACTGCCTAAAAATTGCTAAGTCATTGTGCAGAGCCTACGAGCTAGGCGCTACACTGTATAGTGTGGCGCCT
AGCTCTCAGGCGCTGCACTAGTGGTTGCACTACAAAATG-AGCAACCACTAGTGCAACGCCTAGAAGCTAGGCGCTACAA
TGTATAGTGTGGCGCCTAGCTCTCAGGCGCTGCACACTGACTTAGTAATTTTCGGATCACATGGGTGCGACGCTGG-CCA
GGCGTGTAGCGCCTATCTGCGAGGCGTTGCACAGTGTAGTGTGACGCCTTCGTGTCGGGCGTCACACAAAAAGGTCAGCC
ACGTGAAATAGTTTCACGGGCAGTTCATTCTGTGATTTGATTTTGTCCATAGGTCAAATTTGTCAATTTTGCCTTAC---
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----------------------------------------TGGGCATCCATTTGGGT-----------------------
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---------------------------------------------
>chr1D_157
--------------------------------------------------------------------------------
----------------------------------------------------------------------------GGCA
AATTTGATAAATTTGACCTGTGGACGAAATCAAATCACAAAATGAACTGCCCGTGAAACTATTTCACGTGGCTGATCTTT
TTGTGTGACGCCCGACACGAAGGCGCCACACTATACTGTGCAACGCCTCACAGATAGGCGCTACATGCCTGGCCAGCGTT
GCACCCCAGACTGCCTAAAAATTGCTAAGTCATTGTACAGAGCCTAAGAGCTAGGCGCTGCACTGTATAGTGTGGCGCCT
AGCTCTGAGGCGCTGCACTAGTGGTTGCACTACAAAATGAAGCAACCACTAGTGCAACGCCTAGAAGCTAGGCGCTACAC
TGTATAGTGTGGCGCCTAGCTATCAGGCGCTGCACACTGACTTAGTAATTTTCGGATCACACGGGTGCGACGCTGG-CCA
GGCGTGTAGCGCCTATCTGTGAGGCATTGCACAATGTAGTGTGGCGCCTTCGTGTCGGGCGTCACACAAAAAGGTCAGCC
GCGTGAAATAGTTTCACGGATAGTTCATTCTGTGATTTGATTTTATCCATAGGTCAAATTTGTCAATTTTGCCT------
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---------------------------------------------
>chr1D_157
--------------------------------------------------------------------------------
----------------------------------------------------------------------------GGCA
AATTTGACAAATTTGACATGTGGACGAAATCAAATCACAGAATAAACTGCCCATGAAACTATTTCACACGGCTGACCTTT
TTGTGTGACGCCCGACACAAAGGCGCCACACTATATTGTGCAACGCCTCACAGATAGGCGCTACACGCCTGGCCAGCGTT
GCACCCCAGACTGCCTAAAAATTGCTAAGTCATTGTGCAGAGCCTAAGAGCTAGGCGCTGCACTGTATAGTGTGGCGCCT
AGCTCTCAGGCGCTGCACTAGTGGTTGCACTACAAAATGAAGCAACCACTAGTGCAACGCCTAGAAGCTAGGCGCTCCAC
TGTATAGTGTGGCGCCTAGCTCTCAGGCGCTGCACACTGACTTAGTAATTTTCGGATCACATGGGTGCGACGCTGG-CCA
GGCGTGTGGCGCCTATCTGTGAGGCGTTGCACAGTGTAGTGTGGCGCCTTCGTGTCGGGCGTCACACAAAAAGGTCAGCC
GCGTGAAATAGTTTCACGGACAGTTCATTCTGTGATTTGATTTCGTCCATAGGTCAAATTTGTCAATTTTGCC-------
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---------------------------------------------
>chr7D_157
--------------------------------------------------------------------------------
----------------------------------------------------------------------------GGCA
AATTTGACAAATTGT-CCTGTGAACAAAATCAAATCACAGAATGAACTGTCTGTGAAACTATTTCACGCGGCTGACCTTT
TTGTGTGACGCCCGACACGAAGGTGTCACACTACACTGTGCAACGCCTCACAGATAGGCGCTACACGCCTGGCCAGCGTT
GCACCCCAGACTGCCTAAAAATTGCTAAGTCATTGTGCAAAGCCTAAGAGCTAGGCGCTGCACTGTATAGTGTGGCGCCT
AGCTCTCAGGCGCTGCACTAGTGGTTGCACTACAAAATTAAGCAACCACTAGTGCAACGCTTAGAAGCTAGGCGCTACAC
TGTATAGTGTGGCGCCTAGCTCTCAGGCGCTGCACACTGACTTAGTAATTTTCGGATCACATGGGTGCGACGCTGG-CCA
GGCGTGTAGCGCCTATCTGTGAGGCGTTGCACAGTGTAGTGTGGCGCCTTCGTGTGGGGCGTCACACGAAAAGGTCAGCC
GCGTGAAATAGTTTCACGGGCAGTTCATTCTGTGATTTGATTTCGTCCATAGGTCAAATTTGTCAATTTTGCCT------
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>chr5D_713
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-------------------------------------------------------------------------TAACAGG
ACCATTTGCGTGAACGATTGTTGACCACGAGATGCACCTACCTCCCCCTCCCTCCCTAAACCCTCCGCTGTTTGTTTGGA
CGCTTACTTCAGAGTGGTAGTTGTATCTCACAGTCTCAGTACAGCCACATGTCCACTCTTGCTATTCCCACCTAACCCTA
CTCCCACCCCCATAGCACGGAAGCACGACGATAAAACGCCCACGCTCTTCCATCTCTGCCATAACAAACGCAAAGCTGCT
CCATCATCTTCCTCTA--TTTCTCTTTCATCTCTTGACCTCTGCAAGAAAACAAGTAAGCCTGTCCAGCTCTACTCTCAT
TTCTGCTCTTTTTGTTTCAAACAAATTTTAACACGCAAATGTCAGCTAGTTTCATGAGTCGCAAACGAGAAAAAGAAAAC
AGAGTCAGCTTTTGATCGAATTTTGCTTGA----AACTGCAGTGGGATCGGAGCAGGAGAAGAAGGCCGCCGCCACGGTG
GAAGTGGAAGGCATCCCGTTCCCGCGGGAAATCGCCGCCGCCAAGACGCTCTCGCTCGTCGGCCATGGCAAGTACCAGAA
TCCTTGACTGACGGAACGGATACGAATGCATCATTTT---TTTTTTACGAAAGTCAGTT-------CTTCAACGTGCAGG
CGTCACGGACATTGAGATCCACTTCCTTCAGATCAAGTTCAACGCCATCGGGGTCTACCTCGACGTCGACGGCGCCATGG
AGCATCTGCAGGGCTGGAAGGGGAAGAGCCAGCTGATGGAGGACGAGGCTTTCTTCGACGCATTGGTCTCCGGTGAGACG
ATGGATGGGTGATAATCGGCCTCCGACAAGAGACGTTGGTCATATGTTTCTGACACGATGTTGCGCGTGCATTTGCAGCT
CCGGTGGAGAAGGTGCTGAGGGTGGTGGTGATCAAGGAAATCAAGGGGTCGCAGTACGGCGTGCAGCTCGAGAGCTCCGT
CAGGGACCGCCTCGTGGCGGCGGACAAATACGAGGACGAGGAGGAGGAGGCGCTCGAGAAGGTCTCGGACTTCTTCCAGT
CCAAGTACTTCAGGCCCGGCTCCGTCGTCACCTTCCACTTCCCGGCCACGGCCACCGCCGCGCCAGAGATATCGTTCGTG
ACAGAAGGCAAGGAGGAGGCCAAGGTGGCGGTGGAGAACGCGGCCGTGGCGGAGATGATCCAAAGGTGGTACCTCGGCGG
CGATTCGGCGGTGTCGCAGACCACCGTCAGGAGCATCGCTGATAGTTTCGCGGCAATGCTCTCCTCACCATGATTCTTTT
TTT------------------------ACAAGTGCTGCTTACTTGCTTTTGCAATAAATCGATAAGTCATGATA------
---AAAAAACACTTGGTGGCGGAAGCCTTACCGGTCCTTTGGCAACTCGATCCAA-CGCTGTACATCA---AATCATTTC
CAAATTTTTGGATAAAGGGCACTTTATTATATAAAAGATTTAAGTATTACA-TTTGCTCTCTCATAACTAAGATGCACAG
AACCAAACTAAATCCAATCTC--AA--AAAG---AAAAAGAAGACGGAATACAAGTATTCATGAAAAGAGACTGTATGAC
ACATAAACCATTGGAGGGC-----CAATCCTAAAATTACGCTGCCATCCATGTCGGGTAAAAGTATTCCTCGTCATGTTC
TTCAAGTGTGTACAGACCTCCATAAACACCTCTCGATTCTCTACGTGTTGT--AGACGACTATAAACGGAGCGTACCAGT
ACATCTGTAGATAACCTACAAAAGAGAAGTACTTTTGTCATT-AAATACCTTATCATTTCTACATAGCCAGAGCGACCAA
ATAACGGCAAGCGCTCCCACCCCGAAAAGAATTCTAGACCTATACTCTATCCCATGTTACGAGTTGCCAAATATATTAGC
AAAACTATGTGGAGGGTACAAGGAAAAACCTACTTGGATGACTGACCATATAGAATGAGCCAATTTGCATTGGAAAAACA
--AGTGTTTTATTGTTTCGCCATGATGATAAAAAACACATTGTGTAGTTTCATGTCAATTGCTCTTAATAAGGTTGTCCT
TTATAAGAATGA---CTCCTCG---ACGAAGATACCACACAAAGATTTTATTCTTAAAGGGTATCTTCATCTTTCAAATC
CTTTTATTGTTATCAACTTGCACCTGTGACTGGATCAGAGCACTATACATAGAATCCGCGACGAATTTACCATTCACGTG
TAGGTTCCACCAAAATTCATCAGCTCCTGGTGACAGTTGTACCTTGGATAGTCTCAATTAGAAAGTGTTCCACGATTCAG
GTCT-GGGCCAATTAAATCTCTTTAGGACGTCACATTTG------
>chr5A_717
AGA-----------------------------------------------------------------------------
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ACCATTTGCGTGAACGATTGTTGACCACGAGATGCACCTAACC----------CCCTAAACCCTCCGCTGTTTGTTTGGA
CGCTTACTTCAG--TGGTAGTTGTATCTCACAGTCTCAGTACAGCCACATGTCCACCCCTGCTATTCCCACCTACCCCTA
CT-CCACCCCCATCGCACGGAAGCACGACGATAAAACGCCCACACTCTTCCATCTCTGCCATAACAAACGCAAAGCTGCT
CCATCAACTTCCTCTTTGTTTCTCTTTCATCTGTTGACCTCTGCAAGAAAACAAGTAAGCTTCTCCAGTTCTACTCTTAT
TAAC---------------------------------------------TATCATGAGT---------GAAAAAGAAAAT
ATATTCAGCTTTTGATCGAATTTCGCTTG-----AACTGCAGTGGGATCGGAGCAGGAGAAGAAGGCCGCCGCCACGGTG
GAAGTGGAAGGCATCCCGTTCCCGCGGGAAATCGCCGGCGCCAAGGCGCTCTCGCTCGTCGGCCATGGCAAGCACCAGAA
TCCTGGACTGACGAAACCGATACGAATGCATCTTTTTTTATTTTTGACGAAAGTAAGTT-------CTTCAACGTGCAGG
CGTCACGGACATTGAGATCCACTTCCTTCAGATCAAGTTCAACGCCGTCGGGGTCTACCTCGACGTCGACGGCGCCATGG
AGCATCTGCAGGGCTGGAAGGGGAAGAGCCAGCTGATGGAGGACGAGGCTTTCTTCGACGCCCTGGTCTCCGGTGAGACG
ATGGATGCATGACAATCGACCTCCGACAAGTGACGTTGGTCATATGTTTCTGACACGATGTTGCGCGTGCA--TGCAGCT
CCGGTGGAGAAGGTGCTGAGGGTGGTGGTGATCAAGGAGATCAAGGGGTCGCAGTACGGCGTGCAGCTCGAGAGCTCCGT
CAGGGACCGCCTCGTGGCGGCGGACAAATACGAGGACGACGAGGAGGAGGCGCTCGAGAAGGTCTCCGACTTCTTCCAGT
CCAAGTACTTCAGGCCCGGCTCCGTCGTCACCTTCCACTTCCCGGCCACGCCCACCGCCGCGCCAGAGATAACGTTCGTG
ACAGAAGGCAAGGAGGAGGCCAAGGTGGCGGTGGAGAACGCGGCCGTGGCGGAGATGATCCAGAGGTGGTACCTCGGCGG
CGAGTCGGCGGTGTCGCAGACCACCGTCAGGAGCATCGCTGATAGTTTCGCGGCAATGCTCTCCTCACCATGATTCTTTT
TTTTGAGGGCACCATGATTCTTTTTTTACAAGTGCTGCTTACCTGCTTTTGCAATAAATCGATAAGTCACGATGAAATAT
TTCAAAAAACACTTGCTGGC-GAAGCCTTACCGGAACTTTGGCAAGTCGATCCAA-CGCTGTA---CATCCAACCATTTC
TAATTTTTTCGATAAAGAGCACTTTATTAT--------------------------------------------------
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>chr5D_2140
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-------------------------------------ATTTAAGTATTACACCCAGCCTTTGTATAACTGTGATGCACAC
AACCAAACCAAATCCGGTTTC--AA--AAAG---TAAAAT--GACGAAATACAAGTACTCATGAA--GAGACTGTATGAC
ACCTAA-CCGTAGGAGAGC-----CAATCCTAAGATCATGCTGCCATCCATGTCAAGAAAAAATA-TCCTCACCGTGTTC
TCTAAGCGTGTACACACCTCCGTAAATAGATCTCGGTTTTCCACACATTGAAGAGACGACCATGAATGGAGCATACCGGT
ACATCTGTAGATAACCTGTATAAGACAAGTACTTTTATCGTT-AAAAACCTTATCATTTCTATATAGCCAAAGCGACCAA
ATAACGACAAGCGCTTCCATTCTGAGAAGAATTCTAAACATGTACTCTATCCCATGTAACTAGTTACCAAATATATTAGC
AACACTACGTGGAGCATACAAGTCAGAAGCTATTTGAATGACTGACCATATAGAATGAGCCAATTTGCATT-AAAAAATA
--AGTGTTTTATTGTTTCATCATGATGACAAAATACACATTGCGTACTTCCATGCCAATTCCTCTTAATAAGGTTATCTT
TGGTAAGAATGA---CTCCACA---ACGAAGATACCACGCAAAGATTTTATTCGTAAGAGGTATCTCCATCTTCCAAATC
TT---ATTATTATCAGCTGGCACCTCTGACTAGATTAGAGCACTATACATAGAGTCTACCGTGAATTTACCATTCATGTG
TAG-----------------------------------------------------------------------------
---------------------------------------------
>chr5D_2141
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--------------------------------------TTTCAGTAATACACCGGGTCTCTGCATAACTAAGATGCACAT
AACAAAACCAAGTCCAAACTC--AT--AAAG---AAAAGT--GACAAAATATAAGTAATCAT-----AAGACTGTATGAC
GCCTAAACCGTAGGGGGGGGGGGGCAATCCTAAGATCATGCTGCCATCCATGTCGGGTAAAAGTATCTTTCCTCGTGTTC
TCCAAGCGTGTACACACCTTCATAAGCAGGTCTCGATTCTCCACACGTTGTAGAGACGACCATAAACGAATTGTACTGAT
ATATCTATAGATAACATGCATAAGACAAGTGCTTTTATCGTT-AAAAACCTTATCATTTCTACATAGCCAAAGCGACCAA
ATAAAAGCGAGCGCTCCCACCCTAAGAAGAATTCTAAACCTATGATCAATCCCGTGTAAGCAGTTGCCAAATATATTAGC
AATATTGCATGGAGGATACAAGCCAAAAGCTACTTGGATGACTGGTCATATAGAACGAGCTAATTTGCATTGGAAAAACA
--AGTGTTTAATTGTTTCATCATGTTTAAAAACAACACATTGCGTACTTTCATGCAAATTCCTCTTAATAAGATTATCTT
TGGTAAGAATGA---CTCTTCG---ACGAAGATACCACGCAAAGATTTTATTCTTAAGTGGTATCTTCATCTTCCAAATC
TTCTTATTGTTATCAACTGGCATTTCTGACTGGATTAGAGCTCTATACATAGAGTCCACCGTGAATATACCACTCACGTG
TAGGTTCCAATGAAATGCGTCGGCTCCTTGTGACAATTGTACCATGAAAAGTCTCTATAACAAAGTGTTCCACGATTCAA
GTCTGGGACCAATTAAATCTCTTCTGAATGTCACATTTG------
>chrUn_2141
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--------------------------------------TTTAAGCATTACA-CCGGCCTCTGCATAATTGAGATGCACAG
--CCAAACCAAGTCCGGGCTCCAAA--AAAA---TCAAAAAAGGCGGAATACAAGTAATCATGTG--AAGACTATATAAC
GCCTAAGACGTAGGAGGGT-----CAATCCGAAGATCATGCTGCCATCCATGTCGGGTAAAAGTATCCCTCG-CGTGGCC
TCCAAGAGTGTGCACACCACCGTAAACAGGTCTTGATTTTCCACATGTTGTAGAGATGACCATAAACGGAGTGTACC-GT
ACATCTATAGATAACCTGTAGAAGAGAAGAACTTTTATCATT-AATAACATTATCATTTCTACAT-GCCAAAGCGACCAA
ATCGCGGCAAACGCTCTCACACTGAGAAGAATTCTAAACTAGTTATTGATCCCATGTAACCAGCTGCCAAAAATATTAGC
AACACTATGTGGAGCATACAAGCCAGAAGCTACTTGGATGACTGACCATATAGAACGAGCCAATTTGCATTCGAAGAATA
--AGTGTTTTATAGTCTCATCATGGTGACAAAAAACACATTGCGCACTTCCATGCCAATTCCTCTTAATAATGTTATCTT
TGATAAGAATGA---CTCCTCG---ACGAAGATACCACGCAAAGATTTTATTCTTGAGAGGTGTCTTCATGTTCCAAATC
ATTTTATTATTATGAACTGGAATATCTGACTGGATCAGCGCTCTATGCCTGGACTCCACCGAGAAATTACCACTCACGTG
TAGGTTCCAACGAAATACATCAGTCCCTTGCGACAATTGCACCGTGGATAGACGTTGTACCAAGGT-TTCCATGATTCAA
GTCTAGGACCAATTAAATCTCTCCTGAACGTCACATT--------
>chr2A_2141
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--------------------------------------TTTAAGTATTACATCTGGCTTCTCCATAACTAAAATGCACAC
ACCCAACCAAA-TACAAGTTC--AA--AAAG---TAAAAACAGCCGAAATACAAGTAATCATGTA--GATACCGTATAAC
CCTAAAACATA---AGAGT-----CAATTCTAAGATCATGTTGTCATCCATGTTGGGTAAAAATATCACTCGCCATGTCC
TTCAAGCGTGTACACACCTCCGT-----------GATTCTCTACACGTTATAGAGACGACCATAAATGGAGAGTACTGGT
ACATCTGTAGATAACCTGCATAAGAGAAAAACTTTTATTGTTAAAAACCATTATCATTTCTATATAGCCAAAGTGGTCAA
ATAACAGCAAACGCTCCCACCCTAAGAATAATTCTAAACATGTGATCAATCCCACGTAACCAGTTGCCAAATATATTAGC
AACATTACATGGAGGATATAAGGTAGAAACTATTTGGATAACTG-------AGAACGAGCCAATTTGCATTGGAAGAATA
TAAATATTTTATTATTTCATCATGGCGACAAAAAA-ACATTGCGTACTTCAATGTCAATTCCTCTTCATAAGGTTATCCT
CGGTAAGAATGA---CTCCTCA---ACGAAGTTACCATACAAAGATTTTATTCTTAAGCGGTATCTTCATCCTTCAAATC
TTCTTATTAT---CTGCTAGCACATCTAACTGGATCAAATCTCTATATATAGACTCCACCAAGAATTTACCACTCGTGTG
TAGGTTTCAACAAAATTTATCGGCTCCTTGTGACAGTTGCACCATGGACAGACGTTGTACAAAAGTGTTCCACGATTCAA
GTATGGGACCAATTAAATCTCTCCT--------------------
>chr3B_2141
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--------------------------------------TTTAAGCATTACACCCGGCCTCTGCATAACTAAGATGCACAC
AGCCAACAAAG-TCGTCACGATAAGCCAAAA---TAAAAGAAGGCGAAATACAAAGATGAATATT-------TGGATGAC
ACTTAAATGGTAGGAGGCC-----CAATCCTAAGATCATGCTGCCACCCATGTTGGGTAAAAGTATCCCTCACCGCAACC
TCCAATCGTGTACACACCTCCGTAAACAGGTCTCGATTCTCCACTCACTGTAGAGAGGACCATAAACGAAGCGTCCCGGT
ACATCTGTAGATAACCTGCATAACGGAAGTACTTTTATCATT-AAAAACCTTATCATTTCTACATAGCCAAAGCGACCAA
ATCACGGCAAGCGCTCCCACCCTGAGGAGAATTCTAAACTTGTGATCAATCCCATGTAACCAGTTGCCAAATATATTAGC
AACACTACACGCAGGATACAAGCCAGAAGCTATCTGGATGACTGACCATATAGAACGAGCCAATTTACAATGAAAGAACA
--AATGTTTTATTGTCTCATCATGCGGACAAAATACACATTGCGTACTTCCATGCCAATTCCTCTTAATAAGGTTATCTT
TAGTAAGAATGA---CTCCGCG---ACGAAGATACCACGCAAAGATTTTATTCTTAAGGGGTATCTTCATCTTCCAGATC
TTCTTATTATTATCAACTGGCACATCTGACTGGATCAGAGCTCTATACATAGACTCCACTGAGAATTGCCCATTCCCATG
TAGGTTCCAACGAAAGATATCGGACCCTTGTGACAACTGTACCGTGGTTAACCGTTGGAGCAGTATGTTCCACGATTGGA
GTCTAGGTCCAATTAAATCCCTTCTGAACGTCACATTTG------
>chr3B_2141
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--------------------------------------TTTAAGCATTACACCCGGCCTCTGCATAACTAAGATGCACAC
AGCCAACAAAG-TCGTCACGATAAGCCAAAA---TAAAAGAAGGCGAAATACAAAGATGAATATT-------TGGATGAC
ACTTAAATGGTAGGAGGCC-----CAATCCTAAGATCATGCTGCCACCCATGTTGGGTAAAAGTATCCCTCGCCGCAACC
TCCAATCGTGTACACACCTCCGTAAACAGGTCTCGATTCTCCACTCACTGTAGAGAGGACCATAAACGAAGCGTCCCGGT
ACATCTGTAGATAACCTGCATAACGGAAGTACTTTTATCATT-AAAAACCTTATCATTTCTACATAGCCAAAGCGACCAA
ATCACGGCAAGCGCTCCCACCCTGAGGAGAATTCTAAACTTGTGATCAATCCCATGTAACCAGTTGCCAAATATATTAGC
AACACTACACGGAGGATACAAGCCAGAAGCTATCTGGATGACTAACCATATAGAACGAGCCAATTTACAATGAAAGAACA
--AATGTTTTATTGTCTCATCATGCGGACAAAATACACATTGCGTACTTCCATGCCAATTCCTCTTAATAAGGTTATCTT
TAGTAAGAATGA---CTCCGCG---ACGAAGATACCACGCAAAGATTTTATTCTTAAGGGGTATCTTCATCTTCCAGATC
TTCTTATTATTATCAACTGGCACACCTGACTGGATCAGAGCTCTATACATAGACTCCACTGAGAATTGCCCATTCCCATG
TAGGTTCCAACAAAAGATATCGGACCCTTGTGACAACTGTACCGTGGTTAACCGTTGGAGCAGTATGTTCCACGATTGGA
GTCTAGGTCCAATTAAATCCCTTCTGAACGTCACATTTG------
>chr3B_2141
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--------------------------------------TTTAAGTATTACACCTGACATCTACATAACTAAGATGCACAC
AGCCAACCAAA------GTCC--AA--ACCC---AAAAAAAGGGTGAAATACAAGTAAACAT-----AAGACTGTAGGAC
ACCTCATCCGTGGGAGGGT-----CAATCTTAAAATCATGCTGCCATCCATGTCGGGTAAAAGTATCCCTCGACGTGCTC
TCCGGTCGTGTACACACATCCATAAACAAATCTTGATTAAAAACACGTTATAAAGATGACCATAAAGGGAGCGTACCGGT
ACATCTGTAGATAACATGCATAAGAGAAGTGCTTTTATTGTT-AAAAACCTTATCATTTCTACATAGCCAAAGCGAGCAA
ATAATGGCAAGCGCTTTCACCCTGAGAAGAATTCTAAACATGTGATCAATCTCATGTAACTAGTTGTCAAATAAATTAGC
AACACTACATGGATGATACAAGGCAGAACCTATTTGGATGATTGTCCATATAGAACGAGCTAAATTGCATTGGAAAAACA
--AGTGTTTTATTGTTTTGTCGTGATGACAAAAGACGCATTGCGTACTTCCATGGCAATTCCTCTTAATAGGGTTATCTT
TAGTACGAATGA---CT---CG---ACGAAGATACCACGCAAAGATTTTATTCTTAAATGGTGTCTTCATCCTCCAAATC
TTCTTATTATTATCAACTGGCACCTTTGACTGGATCAAAGCTCTATACATAGAGTCCAGCGTGAATTTACCACTCACGTG
TAGGTTTCAGCGAAATTCATCGATACCTTATGACAGATGTACCGTGGACAGTCTCTGTAACAAAGTGTTACA-TATTCAA
GTATGGTACCAATTAAATATCTTCTGAATGTCACATTTG------
>chr6B_2324
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---AAGCGTGTACA--CCTTCGTAAATAGGGCTCAATTCTCCACACGTTCTAGAGATGACCATAAACGGAGCATACCAGT
ACATCTGTAGATAACCTGGATAGAAGAAGTACTTTTATCGTT-AAATACCTTATTATTTTTACAAAGCCAAAGCGACCAA
ATAACTGCAAGCACTCTCAACTTGAGAAGAATTCTAAACATTTATTCTATCACATGTAACTAGTTGCTGGATATATTAGC
AAGACTACATGAAGGATATAAGCCAAAAGCTACTTGAATGACTGATCATATAAAACGAGCCAATTTGCATTGGAAAAACA
--ATTGTTTTATAGTTTCATCGTGATGGCGAAACACACATTGTGTACTTCCATGCCAATTCCTCTTAACAAGGTTATCTT
TGATAAGAATGG---CT---CCTCTATGGAGATACCACGCAAATATTTTATTTTTAAGCGGCATCTTCATCTTCCCAATC
TTCTTGTTATTATCAACTACCACCTTTGACTGGATCATAGCGCTATACATAGAGTCCATCATGAATTTACCATTCACTTG
TAGGCTCCAATGAAATTCAG-GGCTCCTTGTGACAGTTGTATCGTGGATAGTCTCAGTAATAGAGTGTTCCACCATATAT
GTCTGGGACCAATTAAATCTCTCCTGGACATCACATTTGGCAGAA
>chr3D_2448
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------------------------------------------------------------------GCCATAGCAACCAA
ACAAGGGCAAGCGCTCCCACATTGAGACGAATTATAAACTAGAATTCCACCCCATGTAACCAGTTGCTGAATATATTGGC
AACACTAAATGAAGGATACAAGCCAAAAACTACTTGGATGACTGACCAAATAGAACGA-CCAACTTGCATTGGAAAAATA
--AGTGTTTTATCATCTCGTCGTGATGACAAAACACACATTGCTTATTTCCATGCCAATTCCTCTTAATAATATTATCTT
TGGTAAGAATGACTCCT---CG---ACGAAGATACCACGCAAAGATTTTATTCTTAAGTG--ATCTTCATTTTCTAAATC
TTCTTGTTATTATCAACTGACACCTCTGACTGGATCAGAGCACTATACATAGAATCGATCGTGAATTTACCATTCACCTG
TAGACTCCAATGAAATTCATCAGTTCCTTGTGATAATTGCACTGTGGATAATCTCAATAATAGAGAGTTCCACTATTCAA
GTCTGGGACAAATTAAATCTCTTCTGAACGTCACATT--------
>SNPs
S---S--SSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
-------S----------------------------S-------------------------------------------
--------S-----------------S-----------------------------------------------------
--------------------------------S---------------------------------------S-------
---------------------------------------------------------S-------------S--------
----------------------------------------------------------------------------S---
-----------------------------------------------------S--S----------------S---S--
---------S---------------------------------------------------S------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------SS-S-------------------S------------------S-
------------------S-----------SSSS----------------------------------------------
---------------------------------------------------------------------------S----
--SS-------S-----S--S-----S-S-----------------SSSS-SSS--SSSSSSSSSS--------------
------S--------------S----------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S----------S--------------------------------------------
--------------------------------------------------------------------------------
------------------S-------------------------------------------------------------
-----------S---------------------------------------S----------------------------
--S-----------------------------------------------------------------------S-----
-------------------------------------------------------------S------------------
--------------------------------------------------------------------------------
---------------------------S---------------------------S------------------S-----
----S-----------S-S------------------------S------------------S-----------------
S------S-----S-----------------SSS-------------------S--------------------------
-------------S-------------------S--------S----------------S-------------------S
----------------S---S---------S---------S------------------S--------------------
--------------------------------------S-----------------------------------------
---------------------S-----------S----------------------------------------------
--------S-----------------------------------------------------------------------
-------------------------------------------------------------S---------------S--
-----------------S-----------------------------------------------S--------------
--------S------------------------------------------S----------------------------
---------------------------SS--S-----S--------S----------------------S-----S----
---------------S-----------------------S--S--
>forward_87
-------------------------------------------------------------------TAGGAGGACCAGC
TGAGCAT-------------------------------------------------------------------------
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>reverse_2108
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---------------------------CTACCGGTCCTTTGGCAACT---------------------------------
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---------------------------------------------
