>input_sequence_64008
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-----------------------------------------------ATGATCGCGGCGGGCGGCCCCTCCATCTTCAAG
GACGGCAAGGGCTGCGGCGTTTGCTATCAGGTTAAATGCACCGGGAATGGCGCTTGCTTCGGCCGCCCGGTGACCGTGGT
CGTCACAGATCTGTGCCCCGGCGGCGAGGCGTGTCTGGCCGAGGCTGCCCACTTCAACCTCAGCGGCAAGGCGTTCGATG
CCATGGCGAAGCCCGGCGAAGCCGACAACCTCCGCGACGCCGGCGAT---------------------------------
---------------ACACTCATGCCCAGTGGTCCGCTCCACCTCCATGCATGTTCGTGTG-----------ATCAACTG
CTCAATAGTTTTTTTTTGAACATCAGTAACAGACACAAGCGCTCATATACACGTGCATACACTCATCCCTATGAACGCAC
ACATGCACACCCTATTTCTATGAGCACCTCCAAAAGACTGAGCCGGCATATCATCTTAAAATTTACGAAGTCACCGTAGG
CATCTTCGTCGTCGACGGGAACGTCTTCTCCCACTAAATGCACATCGCCGGAAATCCTGAAATAAATCCAGGAATAAATG
TGAACATCAGAATTTAAACTCTGATGGGCTGAGGATACCACAGTCCCTCTAACCATCCAACCGCAGGTTGGTTCGCAACT
GCTCAACAGATTGATTGTATCATCTCTTTGATTTCTTCGGCCGCAGGGTTCCATGCAAGTGGCGCGGGCTGGACATCGCC
TTCAGAGTGGAGGCTGGCTCCAGCCCGAACTATCTCGCGGTGCTCATCAACCATGAGTCCGGCGACGATGACCTGTCGAC
GGTGGAGCTTCAGCAGCGCGGCCGTAGCTGGGCACCGATACAGCAGTTGTTGGGCGCGGTGTGGAAGTACAGCTCCGGGC
CCACCCTGCAGGCGCCCATATCGATCTGCCTCACCACCAGCGCCGGCAAGGAACTCGTCGCCAGCGACGTGATCCCCTCC
GGCTGGCAGGCCGACAAGACCTACCGATCCATCG-----TAAATTAA---------------------------------
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>chr2B_1_TraesCS2B01G122100
AGAAGAGAGGGCAACCCGGCAATGGTTTTCGGAGACCGAAAACGTCTGACGCTAGACCGACTATATCGCGGTTATATATT
TAACGGTAGGGCACTCAAACGAACTCCGAATGCGATGAAACTTGGCAGGCGCTCTGTCTACACTATAATAAGACCGCATG
ACAAGTTGCATCCCATTCCGAGAACATTTTTATGCCGCTTATAAAATAATATTTCGGAGGTGCCGCGGGCGCGTGCGAGT
GTGGTCGGGGCTCATAACGGACAACGGAGAGAACCGGCGGAACACGAACGGATGCAAGTTTTGAAAAACATGCGGATGAA
ATGCAGATGATGCCATGAGATGAAATGCAAGACAAGAACAAAATGCAAAACAACAGACAAAACCCCAACCACGAAGGATA
TATCATATATCATCTCTGGAAAAGACAAGAGTTGGAGTTATGAATATGGAAAGTTGTATCCGGGGCGTTACACTCCATGA
TAAGGGTGCATGTATGCATGTTGGGACGTGTATACAGGGGAAATACACTTTGGTTCCTGGTTGTATATGTATCCTATATG
GGAATTTTTTTAATATTTTAATAAAAGTCAAAATAGGTAAGAACTATTTTGACAAAACACTTAACTATTTTGACGAAAAA
AACCAAAGTTGACCTCATAGCAAAAAGGCAAAATTTATTTGCTATTATAGGTCACTATTCATACTATTTTAGCCAAAAAA
TTGTCTTTTTCGAAAAGAAGTCAAAGGGATATTTTTTTCTTGATTTTTTTTCTCACGAGTAAAGGTCAAGTTTATTTCAA
AAATATTTTCAGAAATTTTCGACTTTTTATTGAATTACTAATTTTTTTCCATATAGCGTGCATATGTCCCATAGACCAAA
AATTCCCCTCCGTGTATACAGCAGCTATTTATGTGTACTAAGTACTGACAA-------GTGCACGAGCGTGCTGCAGGTG
GTGCGTGCGGGTACCAGGACGACGTGGAGAAGCCACCGTTCTCCTCCATGATCGCGGCGGGCGGCCCCTCCATCTTCAAG
GACGGCAAGGGCTGCGGCGTTTGCTATCAGGTTAAATGCACCGGGAATGGCGCTTGCTTCGGCCGCCCGGTGACCGTGGT
CGTCACAGATCTGTGCCCCGGCGGCGAGGCGTGTCTGGCCGAGGCTGCCCACTTCAACCTCAGCGGCAAGGCGTTCGATG
CCATGGCGAAGCCCGGCGAAGCCGACAACCTCCGCGACGCCGGCGAT---------------------------------
---------------ACACTCATGCCCAGTGGTCCGCTCCACCTCCATGCATGTTCGTGTG-----------ATCAACTG
CTCAATAGTTTTTTTTTGAACATCAGTAACAGACACAAGCGCTCATATACACGTGCATACACTCATCCCTATGAACGCAC
ACATGCACACCCTATTTCTATGAGCACCTCCAAAAGACTGAGCCGGCATATCATCTTAAAATTTACGAAGTCACCGTAGG
CATCTTCGTCGTCGACGGGAACGTCTTCTCCCACTAAATGCACATCGCCGGAAATCCTGAAATAAATCCAGGAATAAATG
TGAACATCAGAATTTAAACTCTGATGGGCTGAGGATACCACAGTCCCTCTAACCATCCAACCGCAGGTTGGTTCGCAACT
GCTCAACAGATTGATTGTATCATCTCTTTGATTTCTTCGGCCGCAGGGTTCCATGCAAGTGGCGCGGGCTGGACATCGCC
TTCAGAGTGGAGGCTGGCTCCAGCCCGAACTATCTCGCGGTGCTCATCAACCATGAGTCCGGCGACGATGACCTGTCGAC
GGTGGAGCTTCAGCAGCGCGGCCGTAGCTGGGCACCGATACAGCAGTTGTTGGGCGCGGTGTGGAAGTACAGCTCCGGGC
CCACCCTGCAGGCGCCCATATCGATCTGCCTCACCACCAGCGCCGGCAAGGAACTCGTCGCCAGCGACGTGATCCCCTCC
GGCTGGCAGGCCGACAAGACCTACCGATCCATCGTAAATTAAACTACTGATCGAGTGATTGATCGATCGGT-----CTGT
TGGA----------------------------------------------------------------------------
-TCGAGTACCTATGTTGATTAGCTTCTTGCCTCTACATGTAA--------------------------------------
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------------------------------------------------------------TCCACATCAATTTGGAATAG
CTGCCTTCATGCTTGAAAAATTGCAAGTGACATGG-AAAA-TTTGTTTGCCTGAAATCTTTGGCGGATC-TGTTGTATAC
TTGTATATCTATCTAAAACCTCAAGATAATTAGTGCCAACTGAGTTGTTCTTCAATCCTTCCAATAATAATTTTTTGTTG
AAATTCAACAAAGCATACAAAAAAACTCACTTAATT--TAGGATTTAAAAGAAGGAAAACACATATTTTTCGTCCTTAAA
CTCTTCCGGAAGTTTAAAAATCGTCGCTCAACTTCAAAATCATCAAAACTTAGTCCCTCGACTAATTAAACTGGATAT-T
TTCATCCTTGATAATACTTTGGTCAAAACCAGCAGCTAACTAAACCGGCTGGCCCAAGTCCGGTCAACAAAGCGGTGGCG
CGGACGGGACAGAGCCAGGGCGTGGCGGGTGCTCGCCCAGAGCACGACCAGGCACACGGGAGTGAATGGAGTAGGACGCG
TGTGGGGCTGCATGAGTGAGACCGGGGACGCTGGAGATTTATGAGGTCGTCGATGGAAACCGGAGAGCCTCAATCGCTGA
CGCCCTTGTCATCTTCTCAGCCTCGTGGTGACCTGCCGCCCATGCCCAGCTCTCCTCCCATGTACCTCTGCTTTCTTTCT
TCGTTTTCATCAGTTTTCTCGCTTTCATTAATTTGAATTGGTTTCTTTGGTTTTTCATTCTTTTGTTTTTGTCTTCTTTG
TTTTTCTTTACTTTTTATTGATTTTCATCGATTCTTTTTTATTCAATACATCTTTTTAAGTACAGATTCAACATTTTATA
TACATCAGAAACATTTTTATATACATGTTTAACATTTTTAAATACATGATTAACTTTTTGAAAACTTACTTTTTGGATGT
CTGCTTTTTTCTATGCACACTGTATGTT
>chr2A_891
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----------CGTGTGTACAGCAGTTATTCACGTGTACTGACGCGTGCA---------------GAGCGTGTTGCAGGTG
GTGCGTGCGGGTACCAGGGCGACATGGAGAAGCCGCCGTTCTCCTCCATGATCACGGCGGCCGGCCCCTCCATCTTCAAG
GACGGCAAGGGCTGCGGTGCTTGCTATCAGGTTAAATGCACCGGCAATGCCGCTTGCTTCGGCCGCCCGGTGACCGTGGT
CGTCACAGACGAGCGCCCCGGCGGCGAGGCGTGTCTGGCCGAGGCTGCCCATTTCAACCTCAGCGGCAAGGCGTTCGATG
CCATGGCCAAGCCCGGCCAAGCCGACAACCTCCGCGACGCCGGCAACATTAGGGTCCAGTACGACCGGTATGCTCTCGCT
AGTTAGCTGGCGCACACACCCATGCCCAGTGCTCTG-----CCTCCATGCATGTTCGTGTGTGATACTGTGCATCCATCG
ATCATTTG------------------------------------------------------------------------
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-------------------TCATGTCTTTGATTTCCTCCGCCGCAGGGTTCCGTGCAAGTGGCGCGGGCTGGACATCGCC
TTCAGAGTGAAGGCTGGCTCCAACCCGAACTACCTCGCGGTGCTCATCGACAACGAGTCCGGCGACGGCGACCTGTCGGC
GGTGGAGCTTCAGCAGCGCGGCGGCAGCTGGGCGCTGATGCAAGAGTTGTTGGGCGCGGTGTGGAAGTACAACTCCATGT
CCGCCCTGCGGGCGCCCATATCGATCCGCCTCACCTCCAGCTCCGGCAAGAAACTCGTCGCCAGCAACGTCATCCCCTCC
GGCTGGCAGGCCGACAAGACCTACCGGTCCATCG-----TAAACTACTGATCGAGTGATTTATCAGTCTGTAGGATCGAG
TATGTGTTAATTCACATTGTATTCCGGCCGTGTACCTTGTGATGCTGCTTTATATATAATAAAGCGAGATGAAAGCCTGT
TTC------ATGTGTTAATTAGCTCCGTGCCTTTATATGTAA--------------------------------------
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------------------------------------------------------------TTCATGTCAATTTGGAAGAG
TTGCTTTCATGCTTGAAAGATTGCAACTAACATTAATTTTTTTTGTTTGCCTGAAATATTTGGCGGATTGTGTTGTATAC
TTGTATATCTGTTTAAAACCTCAAGAT---TAGCGCCAATTTTGTTGTTCTTCAATCCTTCGAGTAA---------GTTG
AAATTCAACAAAGCATACAAAAAAACTCACCTAATTTATAGGATTTAAAAGAAGGAAAAAGCATATTTTTCATCATTAAA
CTCTTGCGAAAGTTTACAAATCGCCGCTCAACTCCAAAAACATCAAAACTTACTCTCTCAACTAATTAAACTGGATATGT
TTCATCCTTGATAACACTTTGGTCAAAACCAGCAGCTAACTAAACCGGCTGGCTCATGGCCGATCAACAAAGCGGTGGCG
TGCATGGGACAGGACCAGGGCGCGGCCGGTGCTCGCCCAGAGCACGGCCGGGCACAGGGGA-------------------
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>chr2D_892
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-----------GTGTATACATCAGCTATGTATGTGTACTGACTACTGAGTACTGACGTGTGCATGAGCGTGCTGCAGGTG
GTGCGTGCGGGTACCAGGGCGACGTGGAGAAGCCGCCGTTCTCCTCCATAGTCACGGCGGCCGGCCCCTCCATCTTCAAG
GACGGCAAAGGCTGCGGCGCTTGCTATCAGGTTAAATGCACCGGCAACGCCGCTTGCTTCGGCCGCCCGGTGACCGTGGT
TGTCACAGATGAGTGCCCCGGCGGCGGGCCGTGTCTGGCCGAGGCTGCCCACTTCAACCTCAGCGGGAAGACGTTCGGCG
CCATGGCCAAGCCCGGCCAAGCCGACAACCTCCGCGACGCCGGCAACATTAGAATCCAGTACGACCGGTATGCTCTCGCT
AG--------CGCACACACTCATGCCTAGTGCTC-G-----CCTCCGTGCATGTTCGTGTG-----------ATCCATCG
ATCGTTTG------------------------------------------------------------------------
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-------------------TCATCTCCTTGATTTCTTCGACCGCAGGGTTCCGTGCAAGTGGCGCGGGCTGGACATCGCC
TTCAGAGTGAAGGCTGGCTCCAACCCGAACTATCTCGCGGTGCTCATCGATCAAGAGTCCGGCGACGGCGACCTGTCGGC
GGTGGAGCTTCAGCACCGTGGTGGCAGCTGGGCGCCGATGCAGGAGTTCTTGGGCGCGGTGTGGAAGTACAGCTCCGGGT
CCACCCTGCAGGCGCCCATATCGATCCGCCTCACCTCCAGCTCCGGCAAGAAACTCGTCGCCAGCAACGTCATCCCCTCC
AGCTGGCAGGCCGACAGGACCTACCGATCCATCG-----TAAACTACTGATCGAGTGATTTATCAGTCTGT-----CGAG
TATGTGTTAAT------------CCGGCCGTGTACTTTCTGAAGTTGCTTTATAT---ATAAAGCGGAATGAAAGCCTGT
TTCGAGAGTATGTGTTAATTAGTTCTGTGCCTCTATATGTAACTAGTAATAATGTACGTGCAATGCACGTTTATATTAGG
TGGGATATTAGTTGCACGTTATATTAGATAAGATGTATCTGTTGCACGTTGGTATTTGGTGAGATATCAATTACTTTTTC
GCGGGAATGGTAGGATATTAATTACATGGCAGATTTCAAGGGATAGCGTTGAGTCAAACGTGTTTATAACCAATGGCAAT
GATGGGTAATTAGAGCGTTAAACGTGTTTGGTGCTCAACATTGGAGCGATTTGAACCGCTAGATAACATGATTTGACGGT
CTTGATGGTTTGGATCTGCCCATTTGGGTATTTTTATATTGGTATAGATATAGATATAGATTCATGTCAATTTGGAAGAG
TTGCTTTCATGCTTGAAAGATTGCCACTAACATGAAAAAA-TTTGTTTGCCTGAAATATTTGGCGGATC-TGTTGTATAC
TTGTATATCTGTTTAAAACCCTCAAG--ATTAGCGCCAACTGAGTTGTTCTTCAATCCTTCGAGTAA---------GTTG
AAATTCAAT--------CAAAAAAACTCACTTAATT--TAGGATTTAAAAGAAAGGAAAAGCATATTTTTCATCATTAAA
CTCTTGCGAAAGTTTACAAATCGCCGCTCAACTCCAAAAACATCAAAACTTAGTCTCTCAACTAATTAAACTAGATATGT
TTCATCCTTGATAACACTTTGGTCAAAACCAGCAGCCAACTAAACCGGCTGGCTCATGGCCGATCAACAAAGCGGTGGCG
TGCATGGGACAGGGCCAGGGCGCGGCGGGTGCTCGCCCAGAGCACGACCAGGCACATGGGAG------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS-----------------------------S-S------SS-------------S----------------
------------------S---------------S------------------S------S-------------------
-------------------S------------------------S----S------------------------------
----------SS--------------------------------------------------------------------
-------S---------S--------------------------S-S---------------------------------
-------------------------------S--S-SSSSS----------------------------------S-SS-
S---S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS---------------------------------S---------------------------
---------S------------S-------------------------S----S-------------SS---------S-
----------------------S-S--------S-----S---S-----------------------------------S
--------------------------S--------S-----S--------S--------------S----S---------
----------------------------------SSSSS---------------------S---SS--S--------SSS
-SSS----------------------------------------------------------------------------
------SSSS-S----S-------S-S--------S--------------------------------------------
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-------------------------------------------------------------S--SS-----------S--
S---S-------------S-------S-S-----S----------------------S----------------------
----------S-S--------------S-----S---------------------------S-S---SSSSSSSSS----
-----------------------------------------------------------SS----------S--S-----
-----S--S-------S------S---------S-----S---------------S---S--------------------
--------------S--------------------------------------S--S-S---S-----------------
S-S-S-------S---------S---------------------------------S-----SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_466
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----------------------------------------------TGGAAAGTTGTATCCGGGGC--------------
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>reverse_1649
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------------------------------------------------CTAACCATCCAACCGCAGGT------------
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>forward_1570
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------------------------------CCACTAAATGCACATCGCCG------------------------------
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>reverse_3097
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--------------------------------------------------------AAACCGGAGAGCCTCAATCG----
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