>input_sequence_63975
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------------------------------------------------ATGGCGCCACAGCCGGAGTCGACGCAGGAGGA
GGCCGCGGAGGCCTGCCGGCGCGCGGAGGCGCTCTTCCGCGCCGGCGACGTGCGTGCGGCGCACCGCATGGCGCAGAGGG
CCCAGACGCTCTCCCCCGCGCTGCCCGGCGTCGCGAGCGCCCTCGCCGCCTACGCCGTCCACGCCGCGGCCGCCAACCGA
GGCGGCCGCCCCGACTGGCGCGCCGTCCTCGGCCTCGGGCGTGCTCG------------GGAGCCGCTCGACGCCGGCCT
GAGCGAGCATGATGTTATCAGGAGGCAGTTCCGGCGGATGTCCCTCCTCGTCCACCCCGACAAGAACCCCTCCGCCGCCG
CGGAAGGCGCGTTCAAGCTGCTCCGCCAGGCCTGCGACACCCTCTCCGCCACCGCCAGCCGCCACCGGCCGGGCAGTGCC
ACTGCAGCCTCTACACCGGCCGGGCAGT------ACCACCGGCGCAGCTATGCCACACCAGCAGGCGTGCGCGACACGTA
CGCCGAGGCCGCCACCAAGTACGCACCGTCCCCGGCCACCACCAAGAAGCCTACCACGGCCACCGCCGGCAACCACCGGC
CCAGCAACGACGCCGCCGCCAAGCACACCGCGGATCACTGGCGCAACACCCCCGCCTACGCCTCAGCCGCCGGACTCGAC
GACGACTACGACTACGACTACCACGACGACTACTACGACTACTCGAGCCACTACTACAACTACCACGGGCAGGACGACAC
CGCTGAAACGTACACCCCGGCCGCTGGCCACAAGGACGACGATGGCGCCGCTGAAACGCGCAACCCCGCCACCGGCAACA
AAGGCGGCG---------GGTCTTGTGGACCCCGCGAGGACGCACGGATCATCTGTCTGTCCTGCGATTGGGAAGGCGGG
GTCACTAAGCCGACCGGCGTCCCGGTGCCAGGCAGCGAGTGCTCCTGGTGCGGCCAGACGATGACTCGGGTCTCTGGTGC
CGCCATGGA----CTAG---------------------------------------------------------------
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>chr4A_1_TraesCS4A01G353900
ATAGTGATCGTTTTCCTTTTTCAAATGATTAGTTAACATCTTATTCAAATGTTTTTAGTAATATATTTATTTAGAATATT
TGAACGTATGAAAGAAAGTGGAAAAAGAAAAAAAACAAAGAACATGAAAAAAAGGTTGTGGCCTCCCACACGTCTGGGTC
GGCCATCTAGCGCTCGGCTTGACACGAGGCTTCACTACGAGCGAGACATAGGGCGCCCAACCAAATGTGATAGAGTTCTC
AATAAAAAAGGACCCCTCTAGAAATCTGACGTCGGATTTTTAACCATAGCAAATCAAATGTTTTTCATGGCGAATTATAT
TCTTCGAGGATGGCAACTTCGTTGGCCAGCATGAAAAATCCGCCGTAGGTCATTTGTTTTCAAAAAATTGCCGTGCTTGC
AAAATAATTTTTCCATCTGTCATGAAAAACGTCAGATTTGTCATGCTTAAAAAATTGACAAAAGATATTTAGACCCTGTT
CGGATTCCCAGCTGCAGTTTTCGGAGCGGAGGGAGCGCCAGCACAATCGCGCGGAGCAGCTCGAACCCAGCTCCTCGCCA
GAGCGGAGTTGAGAGTCTGGAGAGCTTCCGAATAGGCTCTTAGTGTTTCTTTCGAAAAATATGTAAGT----TCTCTCTA
AAAGACCTACAAGAGGAGTCCAGAGCCGCAGCTGGAAAACCAGCTGCAGGAGGACTTGCTTGACTCGTGTCCGATTAGGA
GTCGTAGTCGCCACGATTCCGG------AGAAACTTAGCGGAGTAAGTTAAGTTTGGTCATTGAAGACTTGAGGAGGCAG
AGGATCCGGACCGCAGCTGGAAAGCCAGGTA----------------------------GCAGGAGGACTCGTTGGACTC
GTGTCCGTGTCCACTC-------------------------TATTATCTCCGACTCGCCCACGGACGCCATCCTA-----
----------------TATCAACATCAGCTCACGCCCCGACGTCCCCATCGACTCCACGTCCTCGTGATCGGCTCCTCCA
CTCAGACGCCAGAGCGCGCTCCCCAGTCGTCCTCGC----TCCCACACATGGCGCCACAGCCGGAGTCGACGCAGGAGGA
GGCCGCGGAGGCCTGCCGGCGCGCGGAGGCGCTCTTCCGCGCCGGCGACGTGCGTGCGGCGCACCGCATGGCGCAGAGGG
CCCAGACGCTCTCCCCCGCGCTGCCCGGCGTCGCGAGCGCCCTCGCCGCCTACGCCGTCCACGCCGCGGCCGCCAACCGA
GGCGGCCGCCCCGACTGGCGCGCCGTCCTCGGCCTCGGGCGTGCTCG------------GGAGCCGCTCGACGCCGGCCT
GAGCGAGCATGATGTTATCAGGAGGCAGTTCCGGCGGATGTCCCTCCTCGTCCACCCCGACAAGAACCCCTCCGCCGCCG
CGGAAGGCGCGTTCAAGCTGCTCCGCCAGGCCTGCGACACCCTCTCCGCCACCGCCAGCCGCCACCGGCCGGGCAGTGCC
ACTGCAGCCTCTACACCGGCCGGGCAGT------ACCACCGGCGCAGCTATGCCACACCAGCAGGCGTGCGCGACACGTA
CGCCGAGGCCGCCACCAAGTACGCACCGTCCCCGGCCACCACCAAGAAGCCTACCACGGCCACCGCCGGCAACCACCGGC
CCAGCAACGACGCCGCCGCCAAGCACACCGCGGATCACTGGCGCAACACCCCCGCCTACGCCTCAGCCGCCGGACTCGAC
GACGACTACGACTACGACTACCACGACGACTACTACGACTACTCGAGCCACTACTACAACTACCACGGGCAGGACGACAC
CGCTGAAACGTACACCCCGGCCGCTGGCCACAAGGACGACGATGGCGCCGCTGAAACGCGCAACCCCGCCACCGGCAACA
AAGGCGGCG---------GGTCTTGTGGACCCCGCGAGGACGCACGGATCATCTGTCTGTCCTGCGATTGGGAAGGCGGG
GTCACTAAGCCGACCGGCGTCCCGGTGCCAGGCAGCGAGTGCTCCTGGTGCGGCCAGACGATGACTCGGGTCTCTGGTGC
CGCCATGGA----CTAGAGCAAAACGTTGGATTTGAGGATCTTATACAAGCTTGTCCATCTATTTCGTGTTGTTTAGAGA
G------AATTAGTTTGTCTATCTGGATCATTTTATGTAATTTAGCTCGTTGGATTTGAGTCATGCTTGGCTTGTAATTT
TGTACTACTCGTAAAGATTTGACGGGTTCATATACAACGTGTTTTTTTAGGGGATTAATTTCAAGTGTTGACAGACCCAA
TTACTGTGCCGATGCTACTTGCGTGAAACGTTCTGGACGGAGGGAGTAGCTCGAACGTTCCGGTGGATCGATAGGTCGGA
TCGGTTGCTGATCGATTTTGGTGGATGCGCAAGCAATACACACGAGAGAGAGACGAGCGGCCCGCGCGTGCGTTTTGCAG
CGAGTGCGTGCGTGCGTTAGCTGAAGTTGGCCCAAATGCGTGCGCTGAGCTAGTTAGCCTAAATGATCCTCAAAAAAGAA
AAGAAAAATTGCTAGCCTAAACGTGGCCACGTACACATCATGTTTTTTTTCTTCTTCTTTCCTTTTGGGTTTCTTCTATT
GTCTTTTTTTTTTCTTCTTTTGACTTTTGGGTACATGCACTACCTACCTATTTATACTACTATATAGTGTATGAGTCTTA
ACAGGGCCGGGCCCGCAAAATCTAGGACCTTGTGCGAAACTAAAAAATAAGGCCCTATTTTACTAAAATAATAACGAGCA
ATTATAATGTATATAACCCTAAAAAAACAATTATAATGTATATGATATAATATCTTATCAGACTGATGTTTCCTCGTGAT
GACTAAAATCAGTATTATAGAAACACAAGATACAAAACATGAATAAAACAAATTAAACTGATACCACAGCAGATACCAAT
TGGATGTTACGCGTGAATGTTAGGCAATTAGACGAACCATTTAACTCACTGGTCTCTAATTAGAAATTAGGAGTAGGAGT
CAAAGTTAATCAGAAAGAAGGACTTTCCAATGGGAAGCTACCTGTTTTGGGGAGAGGATCAGA
>chr5D_610
TTTCGA--------------------------------------------------------------------------
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------------------------------------------------------AAAAATATGTCAG-GTTCTCTCTAAG
AAAAACCTGCCAGAGGAGT-CGGAGCCGCAGCTGGAAAACCAGCTGCAGGAGGACTTGTTTGACTCGTGTCCGATTAGGA
GTCGTAGGCGCCACGATTCCG------CAGAAACATAGCGGAGTAAGCTAAGTTTGGTCATTGAAGACCTGAGGAGCCAG
--------------------------AGGTA----------------------------GCAAGAGGACTTGTTGGACTC
GTGTTCGCGTCCGGTTGGAGGTCGTAGGCGCCACTCCACCTTATTATCTCCGAGTCGACCACGGACGCCATCCTAGCAGT
GCT------------ATATCAACATCAGCTCACCCCCCGACGTCCCCATCGACTCCACGTCCTCGTGACCGGCTCCTCCA
CTCAGACGCGAGAGCGCGATCCCCAGCCCCCAC-------TCGCGCACATGGCGCCACCGCCGGACTCGAAGCAGGAGGA
GGCCGAGGAGGCCTGCCGGCGCGCGGAGGCGCTCTTCCTCGCCGGCGACGTGCGTGCGGCGCACCTCATGGCACAGAGGG
CCCAGACGCTCTCCCCCGCGCTGCCCGGCGTCGCGAGCGCGCTCGCCGCCTACGCCGTCCACGCCGCGGCCGCGAACCGA
GGCGGCCGCCCCGACTGGCGCGCCGTCCTCGGCCTCGGCCGTGCGCAG------------GAGCCGCTCGACGCCGGCCT
GAGCGAGCATGATGTTATCAGGAGGCAGTTCCGGCGGATGTCCCTCCTCGTCCACCCCGACAAGAACCCCTCCGCCGCCG
CCGAAGGCGCGTTCAAGCTGCTCCGCCAGGCCTGCGACGCCCTCTCCGCCACCGCCAGCCGCCGCCGCCCGGGCAATGCC
ACCGCTGCCTCTGCAGCAGCCGCTGGACCCTCGCACCACCGGCGCAGCTATGCCACATCGGCCGGCATGCGCGGCACGTA
CGCCCAGGCCGCCACCAAGCACGCACCGTCCCCGGCCACCACCAAGAAGCCTACCACGGCCACCGCCGGCAACCACCGGC
CCAGCAACGACACCGCCGCCAAGCACACCGCCGATCACTGGCGCAACACCCCCGCCTACGCATCAGCCTCCGGATTCGAC
GACGACTACGACTACGACTACCATGACGACTACTACGACTACTCCAGCCACTACTACAACTACCACGGCCAGGACGACAC
TGCTGAAACGTACACCCCGGCCGCCAGCCACAAGGACGACGACGGCACCGCTGAAACGCGCAGCCCCGCCGCCGGCAACA
AAGACGGCGACCACGACGGGTCTCGGGGACCCCGCGAGGACATACGGATCATCTGTCTGTCCTGCGATGGCGAAGGCGGG
CTCACTAAGCCGGTCGGCGTCCCGGTGCCGGGCAGCGAGTGCTCCTGGTGCGGCCAGACGATGACTCGGGTCTCTGGTGC
CGCCATGGA----CTAGAGCAAAACGTTGGATTTGAGGATCTTA--CAAGCTTGT-CGTCTATTTCCTCTTCCTTAGAGA
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>chr5B_610
TTTCGA--------------------------------------------------------------------------
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------------------------------------------------------CAAAATATGTCAAAGTTATCTCTAA-
AAAAACCTGCCAGAGGAGT-CAGAGCCGCAGCTGGAAAACCAGCTGCAGGAGGACTTGTTTGCCTCGTGTCCGATTAGGA
GTCGTAGGCGCCACGATGATTCTCTCTCAGAAACTTAGCGTAGTAAGTTAAGTTTGGTCATTGAAGACTTGAAGAGCCAG
--------------------------AGGTGATCAGGACCGCAGCTGGAAAGCCAGGTCGCAAGAGGATTTGCTTGACTC
GTGTCCGTATCCGGTTGGAAGTCGTAGGCGCCACTCCACCTTATTATCTCCGACTCGCCCACGGACGCCATCCTAGTAGT
GCTTCGGTGCTATATATATCAACATCAGCTCACCCCCCGACGTCCCCATCGACTCCACGTCCTCGTGATCGGCTCCTCCA
CTCAGACGCGAGAGCGCGCTCCCCAGTCGTCCTCGGTCGATCCCACGCATGGCGCCACAGCCGGAGTCA-----------
-GCCGAGGAGGCCTGCCGGCGCGCGGAGGCGCTCTTCCTCGCCGGCGACGTGCGTGCGGCGCACCTCATGGCGCAGAGGG
CTCAGACGCTCTCCCCCGCGCTGCCCGGCGTCGCCAGCGCGCTCGCCGCCTACGCCGTCCACGCTGCGGCCGCGAGCCGA
GGCGGCCGCCCCGACGGGCGCGCCGTCCTCGGCCTCGGCCGTGCGCAGCACCGCCAGGAGGAGCCGCTCGACGCCGGTCT
GAGCGAGCATGATGTTATCAGGAGGCAGTTCCGGCGGATGTCCCTCCTCGTCCACCCCGACAAGAACCCCTCCGCCGCCG
CTGAAGGCGCGTTCAAGCTGCTCCGCCAGGCCTGCGACGCCCTCTCCGCCACCGCCAGCCGCCACCGACCGGGCGGTGCC
ACCGCAGCCCCTACGGCAGCCGCTGGACACCCGCACCACCGGCGCAGCTACGCCACAGCAGCCGGCATGCGCGGTACGTA
CGCCGAGGCCGCCACCAAGTACGCACCGTCCCCGGCCGCCACCAAGAAGCCTGCCACGGCCACCGCCGGCAGCCACCGGC
CCAGCAACGACACCGCTGCCAAGCACACCGCCGATCATTGGCGCAACACCCCCGCCTACGCCTCAGCCGACGGACTCGAC
GATGACTACGACTACGACTACCATGACGACTACTACGACTATTCCAGCCACTACTACGCCTACCGCGGCCAGGACGACAC
TGCTGAAACGCACACCCCGGCCGCTGGCCACAAGGACGACGA---CACCGCTGAAACGCGCAGCCCCGCCACCGGCAACA
AAGACAACGACTACGACGGGTCTTGTGGAACCCGCGAGCACACACGGATCATCTGTCTGTCCTGCGATTGCGAAGGCGGG
CTCACTAAGCCGGTCGGCGTCCCGGTGCCGGGCAGCGAGTGCTCCTGGTGCGGCCAGACGATGACTCGGGTCTCTGGTGC
CGCCATGAACTAGCTAGAGCAAAACGTTGGATTTGAGGATCTTA--CAAGCTTGTCCATCTATTTCCTGTTCGTTAGAGA
TACTAGTAATTAGTTTGTCTATCTGGATCATTTTATCTAATTTAGCACGTTGGATTTGAGTCATGCTTGGCTTGTAATTT
TGTACT---CGTAAAGATTTGACGGGTTCAT-------------------------------------------------
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>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S--S---------SSS
---S----S-S--------S--------------------------------------S---------------------
-------S-------------S------------------------------------------------------S---
SSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------S-------S---------
------------SS-S----------------------------------------------------------------
---------------------------------S----------------------------------------------
---------S-------------------------S----------------------------------S---------
-----S--------------------------------S--------------------------S--------------
----------------------------------------S--------------------------------S------
--------------------------------------S-----S-S---------------------------------
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-S------------------------------------S----------------------------S------------
--S------------S-S----SSSSSS-----------------------------S----S---S------S------
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-----------S-------------------S------------------------------------------------
-----------------------S--------------------S-----------------------S-----------
S-----------------------------------------S---S---------------S-----------------
---S-------------------------------------S----------------------------S---------
S-----------SS---------------S--------------------------------------------------
--------------------------------------------SS--------------------S----SS-------
S-----------------------------------S---------S---------------------------------
------SSS----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_148
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------------------------------------------------AAAAAGGTTGTGGCCTCCCA------------
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>reverse_1991
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----------------------------------------------------------------------GGAAGGCGGG
GTCACTAAG-----------------------------------------------------------------------
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>forward_491
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-----------------------------------------------------------------------GACCCTGTT
CGGATTCCCAG---------------------------------------------------------------------
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>reverse_2439
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--------------------------------------CACACGAGAGAGAGACGAGC----------------------
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