>input_sequence_63968
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------AGGACATCAAGCAC-----CTGAGCTCCACATCGATCAGTA--------CCCACAG
GACAGCCACTCCA--------------CTCTCAGCTCAGGGACTCGGTGTCAGGGCGACCCAAGACA---GAAG---AAT
C---------------ATGGATTCCGTGACGGCGTCGACGACGGCGAAGCCCACCCTCCGAGTGGCCGCCTTCGGCGGCT
CCCTCCGCAAGGACTCGTGGCACCGTGGCCTCATCCGCGCCGGTACGCACCATTA---ACCAATCACCATG-----GTTG
CCTAGCTCGC----TTGCTAATTATGCACCGCTGAGTGCTGACTGCTGAGTGCGCCTTACTTTGCATGATGATCG-----
----------------------ACGTAGCCGAGGAGCTGTGTGAGGAGTGCATCCCGGGGCTGCGGATCGACCACGTGGA
CATCTCCGGCCTGCCCATGGTCAACCCGGACCTGGTGACCGACGGCGGCGAGGGCTTCCCGCCGGCCGTCGAGGCGCTCC
GCGACAGGGTCCACGCCGCCGACTGCTTCCTGTTCGCCTCGCCCGAGTACAACTACTCGGTCACCGCCTCCCTCAAGAAC
GCGCTGGACTGGGCGTCCATGGG-CGAGCACAACTGCTGGGCTGACAGGGCGGCGGCGATTGTTTGCGCGGGGGGCGACT
TCGGCGGGG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------GCAGGGCGTCGTTCCACCTCCGCCAGATCGGGGTCTTCCTGGACCTTCATTTCATCAACAAGCCTGA
GCTCCACGTGAGGGCGTTCGCGGACCCGCCCAAGTTCGACGAGGAGGGCAACCTCATCGACGTCGAGACCAGGGAGCGGC
TCAAGAAAGTGCTCCTATCGCTCCAGGCCTTCGCGCTCAGGCTCCAGCCCAA---GGACG----ACTAACTGAA------
-----GATC---CATGATACTTGGCACC-----GTGTAC-CGTACGTGCTGGTTAATTTGCATTTTCCTTCGGTTTGACG
ATG--TTCTGCTCCGTCCACTGGTATTCATGGTTTCGTGAAATATTGTAGGAAGTTATACATATGATGTAAATGTTTTAA
AAT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>chr3D_1_TraesCS3D01G103800
AAAAAAAAGACTGCTTTTGGATGATCACACCCAACTCTGTTAGCAAATTTTGGACCCAAATAATTTTAGTAGTAGCATTG
GCTAGAGCCTTATACTCGACTTCTGTGCTTGATCAAGATCCAGTAGTTTGCTTACAAGCACTCCAAGAAATCAAATCGAG
ATCCAGAAGATTTTTTGGAAAAGTGAATTTTTGAAATTGTTATTATTTTTTAAGATATCAACATTTTTTGTAAAATTCAA
ATATGTTTGGAAATATTTAAAATAATTGTAAAGAGATTTCAAACATTATTAAAAAACGCAAAAAATTTCTGAAAAAGTGA
AAAAATATGAAATTTATAACCTTATATAAAAGTTTTGCAAAAAATTCTAAAGCAACTTTCAAAACTTTGAATTTTTTTAA
AATTGTGAATTCATGAAAACTGAAAATGAAAAAAAGTAACCAAAAAATAAAATAAAAGAAACCAGAAAACCAGTAAAAGA
AACCAACAGAAAAGTGGTTCAAGAACCTTCTAGAAGATTTCCGAAACCTTAAAAAAAACCATACAGAAAACCCTAGGCTA
AGCTAGCTAGTGGACCGGCCCAGTTTGTGGCTCGCTCCGTCGTCTTTGTGCGAAGGTACAACACATTGACGGCCTCTCTG
TTTCTCAAAAAAAAATAAAAAATTGACGGCCTCTCACGAAGCACACGATGATGGATGGCGAGGCGAGTTGACGCCATCAA
TGATGTCTGAGAGTGTACTTTTATCTAGC-GTGGTTGACTCGTTGGCAATATAAGTAT------TTCGCACGTGTCAGCT
GATTGTATATTGTCAGTAGATTA--GGCAGCTAATAATCGGAA------GTATGATACCATCGATGACGCTCCGCGTACA
CTTCTACTACCAACAGACCAACTAGTCGTATATTGTCAGTAGATTAGTGCAGTGCAGATATTG-----------------
-----------------------------CGTCTGACGTTCACGATGACCTGGCTGAGACCAACTAGTCGTCTATTTATT
CCGTCTCCTCC---AGGACAAGGCAGGACATCAAGCAC-----CTGAGCTCCACATCGATCAGTA--------CCCACAG
GACAGCCACTCCA--------------CTCTCAGCTCAGGGACTCGGTGTCAGGGCGACCCAAGACA---GAAG---AAT
C---------------ATGGATTCCGTGACGGCGTCGACGACGGCGAAGCCCACCCTCCGAGTGGCCGCCTTCGGCGGCT
CCCTCCGCAAGGACTCGTGGCACCGTGGCCTCATCCGCGCCGGTACGCACCATTA---ACCAATCACCATG-----GTTG
CCTAGCTCGC----TTGCTAATTATGCACCGCTGAGTGCTGACTGCTGAGTGCGCCTTACTTTGCATGATGATCG-----
----------------------ACGTAGCCGAGGAGCTGTGTGAGGAGTGCATCCCGGGGCTGCGGATCGACCACGTGGA
CATCTCCGGCCTGCCCATGGTCAACCCGGACCTGGTGACCGACGGCGGCGAGGGCTTCCCGCCGGCCGTCGAGGCGCTCC
GCGACAGGGTCCACGCCGCCGACTGCTTCCTGTTCGCCTCGCCCGAGTACAACTACTCGGTCACCGCCTCCCTCAAGAAC
GCGCTGGACTGGGCGTCCATGGG-CGAGCACAACTGCTGGGCTGACAGGGCGGCGGCGATTGTTTGCGCGGGGGGCGACT
TCGGCGGGG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------GCAGGGCGTCGTTCCACCTCCGCCAGATCGGGGTCTTCCTGGACCTTCATTTCATCAACAAGCCTGA
GCTCCACGTGAGGGCGTTCGCGGACCCGCCCAAGTTCGACGAGGAGGGCAACCTCATCGACGTCGAGACCAGGGAGCGGC
TCAAGAAAGTGCTCCTATCGCTCCAGGCCTTCGCGCTCAGGCTCCAGCCCAA---GGACG----ACTAACTGAA------
-----GATC---CATGATACTTGGCACC-----GTGTAC-CGTACGTGCTGGTTAATTTGCATTTTCCTTCGGTTTGACG
ATG--TTCTGCTCCGTCCACTGGTATTCATGGTTTCGTGAAATATTGTAGGAAGTTATACATATGATGTAAATGTTTTAA
AATTATATGTTGTGGCTAGGTCTCAGTCGACTAAGATTTAACCAAGTTTCAGTCGACTGACATAACATATAAAATGAACT
AAAAAAAAAAGAAAATTTTGCACATGACAACCTGCATGTTCTTCAGGGAGGGGGGAGGGCGCTGCCCACTAGCACCTCTA
GGACAAGCAAGCACACACCCGATTAGCAGCCATGTGATTGTGGACAATATATCGGCGAAAAATAAACTCCCTGGACCGAT
CCCCTCGCATGATGCGGAATTGTTTGGGGCTGCGTACAAACGGCTCCGAAATTAGATTAATTATTATAAGCTTGGCGAGA
TTGTTCTCACACAATATATCGTTTCATGATTTATTGGCTAGCGCGTAGTGATTCTTCCCAATGGTCCAAGTAAGGGTGTG
TTTGGTTGCTTGGGTGAGCCGAGCCTGGCTCAGAGGAGGAAAACGAGCCAGGCTGAGTGGAGACATGTTAAGAAAATACA
GGATAAACGTGTTGTTTGGTTGCTTGTATGAGGGGTTTGTCGCCAAAAACGTGTTGTTTGATTGCTTGTATGAGGGGTTC
GGCGCCCGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNACCTGACAAACACACCCTATCAGCCATGGGATTGCAGTCAATATGTCGGCGAAAAATAAGCTCCCTGGACCAAC
ACACGTGATGCGGAATTGTTTGGGGGTGCATCGAAATGGCTCCCGAACTAGATTAATTGCTTGGCGAGATTGTTCTCAGA
CAAAAACTAGTCATCGTCTTATACGGGAAGAAAAAAAAACTAG
>chr3B_737
AC------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TTTAATCTCGTGGTGGTTGACTCGTTGGCAATATAA-TAT------TTCGCGCGTATCAGCT
AACTATATATTGTCAGTAGGTTA--GGCAGCTAATGATGAGAA------ATATGATGCCATCGATGACGCTCCGCGTACA
CTCCACCACTACTAGGGTCAGGGACTCGGT---------------------GTGGAGATACTCTTCTTAATTTGTGTAAA
TAAAAT------ATA---------ACCAACATCTGACGTTCACGATGACCTGGATAAGACCAACGAGTCATCTATTTATT
GCGTCTCCTCCTCAAGGACAAGACAGGACATCAAGCAC-----CTGAGCTCCACATCGATCAGTA--------CCC----
-ACAGCCACTCCA--------------CTCTCAGCTCAGGGACTCGGTGTCAGGGCGACCCAAGACA---GAAGAA---T
C---------------ATGGGATCCGTGACGGCGTCGACGATGGCACAGCCCACCCTCCGCGTGGCCGCCTTCTGCGGCT
CCCTCCGCAAGGACTCATGGCACCGCGGCCTCATCCGCGCCGGTACGCACCATTCCTCACCAATCACCATG-----GTTG
CTTAGCTCGC----TTTGTGATCTTGCACCGCTGACT--------------------------------TGCCTTGTTGA
TACTTTGCATGACGATCGATGTATGTAGCCGAGGAGCTGTGCGAGGAGTCCATCCCGGGGCTGCGCATCGACCACGTGGA
CATCTCCGGCCTGCCCATGGTCAACCCGGACCTGGAGACCGACGGCGGCGAGGGCTTCCCGCCGGCCGTCGAGGCGCTCC
GCGAGAGGGTCCGCGCCGCCGACTGCTTCCTCTTCGCCTCGCCCGAGTACAACTACTCGGTCACCGCCTCCCTGAAGAAC
GCGCTGGACTGGGCGTCCAGGGG-CAAGCGCAACTGCTGGGCGGACAGGGCGGCGGCGATCGTGTGCGCGGGGGGCGACT
TCGGCGGGG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------CCAGGGCGTCGCTCCACCTCCGCCAGATCGGGGTGTTCCTCGACCTCCACTTCATCAACAAGCCGGA
GCTCCACATCAGGGCGTTCGCGGACCCGCCCAAGTTCGACGAGGAGGGCAACCTCATCGACGCCGTGACCAGGGAGCGGC
TCAAGAAGGTTCTCCTCTCGCTCCAGGCCTTCGCGCTCAGGCTCAAACACAA---GGACG----AGTGACTGACTCAAGA
TCAACGATACTACTTGGCAGTTGGCACC-----GTATAC-CGTACCTGCTGGTTAATTTGCATT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>chr3D_739
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TTTTATCCAGCGGTGGTTGACTCATTGACAATATAA-TACTCCTATGTCGCGCGTATCAGCT
GATTATATATTGTCAGTAGATTA--GGCTGCTAATGATCGGAC------GTATGATGCCATCGATGACGCTCCGCGTACA
ATCCACCACTCCT---------------------------------------------TACTCTTCTTCCTCTGTGCTAA
TCAAAT------ACTCGCATAACCACCAACGTATGACGTTCACAATGACCTGGCTGAGACCATTTAGTCATCTATTTATT
CCGTCTCCTC---AGGGACAAGACA-----TCAAGCACCTGAGCTGACCTCCACATCGATCAGTA--------CTC----
-AAAGCCACTCCA--------------CTCTCAGCCGAGGGACTGAGTGTCACGGCGACCCAAGACC---GAAGAAAAAT
C---------------ATGGGGTCCGTGACGGCGTCGACGACGGCGCAGCCCACCCTCCGCGTGGCCGCCTTCTGCGGCT
CCCTCCGCAAGGACTCGTGGCACCGCGGCCTCATCCGCGCCGGTACGCACTACTATTCACCAATCCCCATG-----GTTG
CCTAGCTCGCGTCATTGGTAATTTTGCACCACTAACTA--------------CGCCTTACTTTGCATAATGATCG-----
----------------------ATGTAGCCGAGGAGCTGTGCGAGGAGTCCATCCCGGGGCTGCGCATCGACCACGTGGA
CATCTCCGGCCTGCCCATGGTCAACCCGGACCTGGAGACCGACGGCGGCGAGGGCTTCCCGCCGCCCGTCGAGGCGCTCC
GCGAGAGGGTCCGCGCCGCCGACTGCTTCCTCTTCGCCTCGCCCGAGTACAACTACTCGGTCACGGCGTCCCTGAAGAAC
GCGCTGGACTGGGCGTCGAGGGG-CAAGCGCAACTGCTGGGCGGACAGGGCGGCGGCGATCGTGTGCGCGGGGGGCGACT
TCGGCGGGG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------CCAGGGCGTCGCTCCACCTCCGCCAGATCGGGGTGTTCCTCGACCTCCACTTCATCAACAAGCCGGA
GCTCCACATCCGTGCGTTCGCGGAGCCGCCCAAGTTCGACGAGGAGGGCAACCTCATCGATGCCGTGACCAGGGAGCGGC
TCAAGAAGGTGCTCCTCTCGCTCCAGGCCCTCGCGCTCAGGCTGCAGCACAACAAGGACG----ACTGACTCAA------
-----GATC---CATGATACTTGCCACC-----GTGTACTCGTACG------------TCCATTTCCCTAAAGTTTGACG
ACGTTTTCTGCTCCGTGCACTAGTATTCGTGGTTCCGTGAAATACTGTAGGAAGT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>chr3D_741
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------TTATCCAACGGTGGTTGACTCGTTGACAATATAA-TAC------GTCGCGTGTATCAGCT
GATTATATATTGTCAGTAGATTA--GGCTGCTAATGATCGGAAGCAGTGGTATGATGCCATCGATGACGCTCCGCGTACA
CTCCACCACTAC--------------------------------TAGTGCAGTGCAGATACTCTTCTTAATTTGTGCTAA
TCAAATACTCGCATA---------ACCAACGTCTGACGTTCACGATGACCTGGCTGAGACCAATCAGTCATCTATTTATT
CCGTCTCCTCC---AGGACAAGACAGGACATCAAGCAC-----CTGAGCTCCACATCGATCAGTA--------CCC----
-ACGGCCACTCCA--------------CTCTCAGCTCAGGGACTCGGTGTCAGGGCGACCCAAGACA---GAAGAA---T
CGGATCCAGAAGAATCATGGATTCCCTGACGGCGTCGACGACGGCGAAGCCCACCCTCCGAGTGGCCGCATTCTGCGGCT
CCCTCCGCAAGGACTCGTGGCACCGCGGCCTCATCCGCGCCGGTACGCACAATTCATCACCAATCACCATG-----GTTG
CCTAGCTCGC----TTGCTAATTATGCACCGCTGAGT--------------------------------TGATCG-----
----------------------ATGTAGCGGAGGAGCTTTGCGAGGAGTCCATCCCGGGGCTGCGCATCGACCACGTGGA
CATCTCCGGCCTGCCCATGGTCAACCCGGACCTGGAGACCGACGGCGGCAAGGGCTTCCCGCCGGCCGTGGAGGCGCTCC
GCGACAGCGTCCGCGCCGCAGACTGCTTCCTCTTCGCCTCGCCCGAGTACAACTACTCGGTCACAGCGTCCCTGAAGAAC
GCGCTGGACTGGGCGTCGAGGGG-CAAGCGCAACTGCTGGGCGGACAGGGCGGCGGCGATCGTGTGCGCGGGGGGCGACT
TCGGCGGGG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------CCAGGGCGTCGCTCCACCTCCGCCAGATCGGGGTGTTCCTCGACCTCCACTTCATCAACAAGCCGGA
GCTCCACGTGAGGGCGTTTGCGGAGCCGCCCAAGTTCGACGAGGAGGGGAACCTCATCGACGCCGAGACCAGGGAGCGGC
TCAGGAAGGTGCTCCTCTCGCTCCAGGCCTTCGCGCTCAGGCTCCAGCACAACATGGACG----ACTGACTGACTCAAGA
TC---GATC---GATGATACCTGGCTCT-----GTGTAC-CGTGCGCGCTGGTTAATTTGCATTGCCCTTCAGTTTGACG
ACG--TTGTGCTCTATGCACTAGTATTCGTGGTTCCGTGA----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>chr3B_784
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------CGTATCAGCT
AATTATATATTGTCACTAGATTATAGGCTGCTAATGATCGGAC------GTATGATGCCATCGATGACGCTCCGCGTACA
CTCCACGACTACCAGT---------------------------------CAGTGCAGATACTCTTCTTAATTTGTGTAAA
TAAAAT------ATA---------ACCAACATCTGACGTTCACGATGACCTGGATAAGACCAACGAGTCATCTATTTATT
GCGTCTCCTC---AAGGACAAGACAGGACATCAAGTAC-----CTGAGCTCCACATCGATCAGTAGTTCAGTACCC----
-ACAGCCACTCCACTCTCAGCTGGACCCTCTCAGCTCAGGGACTCGGTGTCAGGGCGACCCAAGACA---GAAGAA---T
C---------------ATGGGATCCGTGACGGCGTCGACGACGGCGCAGCCCACCCTCCGCGTGGCCACCTTCTGCGGCT
CCCTCCGCAAGGACTCATGGCACCGCGGCCTCATCCGCGCCGGTACGCACCATTCCTCACCAATC---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------ACGGCGGCGAGGGCTTCCCGCTGGCCATCGAGGCGCTCC
GCGACAGGGTCCGCGCCGCCGACTGCTTTCTCTTCGCCTTGCCCGAGTACAACTACTCCGTCACGGCGTCCCTGAAGAAC
GCGCTGGACTGGGCGTCCA-GGG-CAAGCGCAACTGCTGGGCGGACAGGGCGGCGGCGATCGTGTGTGCAGGGGGCGACT
TCGGCGGGGCAGGGCACGCAAACTCCTTTTTACCGGAGTGGGGATGTACCGGAGCCGCATCCGCCGTTGGCGTTGTTTGC
GATTCGTGCATAGTTATGGCCCATCTTTTATATACGACTGTATTTTTATTATCTATCTTTAGTATATCACTGTAGTATGT
CAGGAGGATGACCCACTATTTATACTAGTTTGTCAGCTTTGTCAGCTCAGCATGCATGCAACCTTTTTCCTCTCTCCCCG
CTCCCAAACAAATCCATCTTTTTATTTTTTTATAGATGGTCATCATATTTTAGATGGTCATCAGAACAAAATCTATCAAC
ATGATCATCATATTTCACATTAAAATTTTAGATGGTCATCATATTTTAGATGGTCATCATATTTCACATTAAAATTTCAT
TATATTTTTTTATAGATTCAAATTTCTTGCAACATGATCTTCAGAACAAAATCAATCTTGAATATTTTAAAATTAGATTT
CAAAATAACATGTTTCATAGTCTTCAAAAAATATCTCGTTTCATAGATTTCACTTAGTTCAAAAAATAAATTTCACTAAG
TTCATAGATATAAATTATTTCAAAGAATTGAGACATATATTCTGTAACGAGTGAAATCACTTTTTACAAACAAGTGAAAT
ATAGTATTTCAATTGAATGAGTGTAATATATTTTCTGAAACTACTGAAATGAGTGAAATCTATCTTTTTTAACAAGTGAA
ATCACTTTTTTGAAACAAGTGAAATATAGTATTTCAATTGAATGAGTGTAATATGTTTTCTGAAACTAGTGAAATCAGTG
AAATCTATCTTTTGTAACGAGTGAAAGCACTTTCTTGAAAGAAGTGAAATTTAGTATTTCAATTGAATGAGTGTAATATG
TTTTCTGAAACTTGTGAAATCTTTCTTTTGTAACGAGTGAAATCACTTTTTTAGAACAAGTGAAATATAGTATTTGAATT
GAATGAGTGTAATATGTTTTCTGAAGTAGTGAAATGAGTGAAATCTATCTTTTGTAACGAGTGAAATCACTTTTTTAAGA
CAAGTGAAATATAGTATTTCAATTGAATGAGTGTAATATAGTTTGAGATGAGTGAAATAATTGAAATACAATAATATTGA
AATATGATACATAAAATTCAAACTAGTCAAAATGTATTCAAGATTGGTCTTGTTTGAAAGGTCTTATCGTCCTAGACTCG
AATATATAAAAAGTTTCAAAAATGAATATTTGGTTCTAAACGTATCAAGTATTCAAAAATATGAGGATGGAAATTAATCC
ATGTGAGTGTATGGAAAGAGAGGCTGCATGCATGCGTCGTCCATCTCCACTCTAACTCTCTCTCCTATGTGAAAAGCCTG
AAAAGACATGCAGTGTCAGCTTTGTCAGCCTGGACAGTTGTATTACAATTGTATAAAGGTGCCGCTTCGTTCAGTAACTT
ATACGGACTCGGGTCGCACAGATCTTGACGAAAGTGACCAACGACGGATGCGGCTCCGGTACATCCCGCCTTCGGTAAAA
AAACTTAGTCGGGCCAGGGCATCACTCCACCTCCGCCAGATCAGGGTGTTCCTAGACCTCCACTTCATCAACAAGCCCGA
GCTCCACGTGAGGGCGTTCGCGGAGCCGCCCAAGTTCGACGAGGAGGGTAACCTCATCGACACCGAGACTGGGGAGCGGC
TCAAGAAGGTGCTCCTCTCGCTCCAGGCCTTCGCGCTCAGGCTCCAACGCAA---GGACGACTGACTGACTGACTCAAGA
TCGATTATA---CTTG---CTTGGCACCGTGTAGTGTAC-CGTACGTGCTGGTTAATTTGCATTGCCCTTTAGTTTGACC
ACG--TTGTGCTCCGTGCATTGGTATTCA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>chr3A_929
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CGTCTGACGTTCACGATGACCTGGCTGAGACCAACGAGTCATCTATTTATT
CCGTCTCCTCC---GGGACAAG-----ACATCAAGCACCTGAGCTGAGCTCCACATCGATCAGTA--------CTC----
-AAAGCTACTCCA--------------CTCTCGGCCGAGGGACTCAGTGTCACGGCGACCCAGGACCGAGGAAGAA---T
C---------------ATGGATTCCGTGACGGTGTCGACGGCGGCGAAGCCCACCCTCCGCGTGGCGGCCTTCTGCGGCT
CCCTCCGCAAGGACTCGTGGCACCGCGGCCTCATCCGCGCCGGTACGCACAATCCATCACCAATCACCATTATATAGTTG
CTTAGCTCCC----TTGGTTATTTTGCACTGCTGAGTGCAA--------------CTGAATTTGCATGACCT--------
----------------------ATCTAGCCGAGGAGCTGTGCGAGGAGTCCATCCCGGGGCTGCGCATCGACCACGTGGA
CATCTCCGGCCTGCCCATGGCCAACCCGGACCTGGAGACCGACGGCGGCGAGGGCTTCCCGCCGGCCGTCGAGGCGCTCC
GCGACAGGGTCCGCGCCGCCGACTGCTTCCTCTTCGCCTCACCCGAGTACAACTACTCGGTCACGGCGTCCCTCAAGAAC
GCGCTGGACTGGGCGTCCA-GGGGCA---ACAACTGCTGGGCGGACAGGGCGGCGGCGATCGTGTGCGCGGGGGGCGACT
TCGGCGGGG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------CCAGGGCGTCGCTCCACCTCCGCCAGGTCGGGATCTTCCTCGACCTCCACTTCATCAACAAGCCGGA
GCTCCACATCAGAGCGTTCGCGGAGCCGCCCAAGTTCGACGGCGAGGGCAACCTCATCGACGCCGTGACCAGGGAGCGGC
TCAAGAAGGTGCTCCTCTCGCTCCAGGCCTTCGCGCTCAGGCTCCAGCACAACAACAAGGAC-GACTGACTGACTCAAGA
TCGGTGATG---CTTGGCAGTTGGCACC-----GTGTAC-CGTATG------------TGCATTTCCCTAAAGTTTGATG
ACG--TTCTGCTCCGTGCACCAGTATTCGTGGTTCCGTGAAACACTGTAGGAAGT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>chr3D_1130
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------CGGCGAAGCCCACCCTCCGCGTGGCCGCTCTCAGCGGCT
CCCTCCGCAGCAACTCGTGGCACCACGGCCTCATCCGCGCCGGTACGTACGCACACATTTCACGCTGATTTAATCTGCAT
GC---------------------------------------ACTGCTGACCGCGCCTTCCATGCGTGC------------
---------------------TATGTAGCCGAGGAGCTGTGCGAGGAGTGCATCCCGGGGCTGCGCATCGACCACGTGGA
CATCTCCGGCCTGCCCATGGCCAACCCGGACCTGGAGACCGACGGCGGCGACGGCTTCCCGCCGGCCGTGGAGGCCTTCC
GCGACAGGGTCAGCGCCGCCGACTGCTTCCTCTTCGCCTCGCCCGAGTACAACTACTCCGTCACCGGCTCGCTGAAGAAC
GCGCTGGACTGGGCGTCCA-GGGGCACGCACAAATGCTGGGCCGACAAGGCGGCGGCGATCGTCTGCGCGGGAGGCGACT
TCGGCGGGG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------GCAGGGCGTCGCTCCACCTGCGCGAGATCGGGATATACCTAGACCTGCACTTCATCAACAAGCCGGA
GCTCCACATCAGGGCGTACGAGGACCCGCCCAAGTTCGACGGCGAGGGGAACCTCATCGACGCCAAAGCCAGGGAGCGGC
TCAAGAAGGTGCTCCTCTCGCTGCAGGTCTTCGCGCTCAGGCTGCAACGCAG---GGA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>chr3B_1313
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------CGTAGCCGAGGAGCTGTGCGAGGAGTGCATGCCTGGGCTGCGCATCGACCACGTCGA
CATCTCCGGCCTGCCCATGGCCAACCCGGACCTGGAGACCGACGGCGGCAACGGCTTCCCGCAGGCCGTCGAGGCCTTCC
GCGACAGGATCAGCGCCGCCGACTGCTTCCTCTTTGCCTCGCCCGAGTACAACTACTCCGTCACCGGCTCGCTCAAGAAC
GCGCTGGACTGGGCGTCCA-GAGGCACGCACAAGTGCTGGGCGGACAAGGCGGCGGCGATCGTCTGCGCGGGGGGCGACT
TCGGCGGGG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------GCAGGGCGTCGCTCCACCTGCGCGAGATCGGGATATACCTGGACCTGCACTTCATCAACAAGCCGGA
GCTCCACATCAGGGCGTACGAGGACCCGCCCAAGTTCGACGGCGAGGGGAACCTCATCGACGCCCAAGCCAGGGAGCGGC
TCAAGAAGGTGCTCCTCTCGCTGCAGGCCTTCACGCTCAGGCTGCAACGCAC---GGAGA--------ATTGACTCAAGA
TCGAATAAA---TTTGGCACC-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS------------------------------------S--------------S---S------
----S------------------------------S--------------------S-----------------------
--S-SS-SSS-SSSS-SS--SSS-S---SSSSSSSSSSSSSSSS----------------S-S-----------------
---------------------------------------------------------------------S----------
----------------------S-----------------------------------------------------SSSS
S-------------------------------------------------------------------------------
-------------------------------------------------------------------------S------
-------------------------S------------------------------------------------------
---------------------------------------SS--------SS-----------------------------
-----------------------------------------S-----------------------S--------------
-----------------------------------S--------------------------------------------
------------S------------------S------------------------------------------------
-------------------S-----S----------------S-----------------S--S----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S----------------------------------S--S--------------S--
--------------------------------------------------------------S-----------------
-------S--------S-------------------------------S------------------S------------
-----------------------------------------------------------------S-----S--------
-S--------------S-----------------S---------S----------SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_640
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------------------------------------------------------------ACACATTGACGGCCTCTCTG
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>reverse_4036
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-----------------------------------GGCTAGCGCGTAGTGATTCT-------------------------
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-------------------------------------------
