>input_sequence_63963
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------------------ATGGCGTGCCTGTCCTCCTCGCCGTCCGGCCGGCGCCTGTCGGAGCTGCTGGAGGAGAGGCA
GGAGCCCTTCTTCCTTGACCTCCACCTCCTGGAGAAGGGCTGCTCGGGCTGGCTCCTCGATGGCTATGACACCGCCCTGT
GCTGGCCAGCCGCAGCCGCCGGCAACGACGCGGCGTCCGTGCTCAAGCGACTCACCAGCAAGAAGAAGAAG---GCTGCA
GCGAGCACCCGTGGTACGAAGCGGCAG------------CAGCAGCCGCCGGCGGGCTCCGGGCTCCTGCGGCTGCTGAT
CTCCAAGATCCTCCAGGGCAAGGTGGCCAACCAG---AAGCCCGCCGCCCTGCAGTGCTCCGAGTCATTCAAGAGGGTCG
CGCCGTCGCCGTTGCCCTGCTCC---AAGCATCTCGACGCCGTGAAGCTCAGGGCCGACGCAGGGGTCGTCAGCGGCC--
----AGGAGACGGAGTATTCCGACTCCGAATACGACGACGAGAAGCAGCACAGCCCGGTCTCCGTTTTGGAGCACCCGTT
CGAGAGCTCTCCTGTCCACGGCCAGAGCAGGTTCTCCTACGTACAAGACTCGCCCAAGAACGCCATGGCCGTCGTCCGGG
AGCTC------CTCATGGAGATGGAGACGGCTTACACGCCTGCGCTGTGCACCCAGTTGTTCGCCAAGTCTGAGGGCCTC
GTCAATGACGCCAACGATCTTGCCGACCACGACGGCG------GCGACGACTACTACTATCGCACGAGCCCTAAGAACTT
CCAAGAGGAAGACGGGACCGCGGCCGCCGGCAGCCCTGCCACCAGCGCCGCCTACTGGGCGACGCACCGAGCGGAGCTGG
CCAGGGTGTCCGAGCTAGTCTCCTCGGAGGTGCCAAGGTCGAGACTGGACGCCGCCAGCGTGCAGCCGGAGCGACGGGAC
GTCGGCGCCGACATAGAGAGCGCCCTGCTCGATGCCTTGGTGCTGGAGCTCGTCATGGATCTCGGTGGTTGCTAA-----
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------
>chr3A_1_TraesCS3A01G443100
CGCGTAGCCTTGCAGATTTTATGCTGTGTTGTCTACTTGTCTCACAGATTGAGTCAAATGTGAGTTCATGCTGCACGATG
CTTTACAGCTATCACAATCATAAGAGAATCTACAGGCAGGGCCATCAAATTCGGCCCTCAAACGCAGGTCACCGGGCACT
TTGCTCCTTAACTTGTCTCCTCCACATCCGCCCTCCTCGTATGCGGTATCCTATATCTATACTGTACATGCAACATGAAC
ATAAATAAATTATATAGATCATCAACATAAATTAGGTACATCATCGCATGGACTATGAACACAGACATAACCAGGACGGA
GGTACCACTGCCGAATTCGCAGCACTTGCCCTTTTCAGTTCTGATGATTCAAAACACCCAAAGCAACTGCAGTTCCTTCA
TTCAATGCGAAAGTACATTGAACACTGCCCTTGCCACAAACACACACCAACTCAAAAGCCAGGAGCTCCATTTTTTTCAC
CTGGTGATTTGACCCATCATATACATTCTCATCTCTCCAA------------------------------C----CATGG
ACACATTTTGTCACAGA---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------TTGTTCTT-CTTAGAGATGTCACAGGCACATA----------------
------ATACGCATTGAGGTCACCCATGCATGC-AACACCCAGCCCAAACG--------CCAAAAATAGCACGACTTTTG
TTAAGGTGCTAGTCTTATGTACGTGGTCATCTGTAT----ATT-AACAAAACAGAACAAAATCGAACTTTGTCTGATGAT
CATAACAAGAGACAAGACAGAGGCACCAACTTAAAAGAATCCCCTAACCTTCATGCG----TGTCTTCCTATCACCGCAC
AATATATTCTTTGTCTCATCGTC---TCTTCTCATAAAAACACGTTTAGTTGGCCTTCTCTTCTTA----TAAGCACT--
-------CCACACACCCATCTCCAACCCCACCTCCTCTTC---TCCTCCTAGCTCATTCT-------TCAAAGTTCAAAC
ACATATTTTCTGTC------------TCTACTCTC--CTTCCTCATTGCCCATAAGCTCCT--------GCGTCTGTGTT
CGTCCTCTTGCGACGCTAATGGCGTGCCTGTCCTCCTCGCCGTCCGGCCGGCGCCTGTCGGAGCTGCTGGAGGAGAGGCA
GGAGCCCTTCTTCCTTGACCTCCACCTCCTGGAGAAGGGCTGCTCGGGCTGGCTCCTCGATGGCTATGACACCGCCCTGT
GCTGGCCAGCCGCAGCCGCCGGCAACGACGCGGCGTCCGTGCTCAAGCGACTCACCAGCAAGAAGAAGAAG---GCTGCA
GCGAGCACCCGTGGTACGAAGCGGCAG------------CAGCAGCCGCCGGCGGGCTCCGGGCTCCTGCGGCTGCTGAT
CTCCAAGATCCTCCAGGGCAAGGTGGCCAACCAG---AAGCCCGCCGCCCTGCAGTGCTCCGAGTCATTCAAGAGGGTCG
CGCCGTCGCCGTTGCCCTGCTCC---AAGCATCTCGACGCCGTGAAGCTCAGGGCCGACGCAGGGGTCGTCAGCGGCC--
----AGGAGACGGAGTATTCCGACTCCGAATACGACGACGAGAAGCAGCACAGCCCGGTCTCCGTTTTGGAGCACCCGTT
CGAGAGCTCTCCTGTCCACGGCCAGAGCAGGTTCTCCTACGTACAAGACTCGCCCAAGAACGCCATGGCCGTCGTCCGGG
AGCTC------CTCATGGAGATGGAGACGGCTTACACGCCTGCGCTGTGCACCCAGTTGTTCGCCAAGTCTGAGGGCCTC
GTCAATGACGCCAACGATCTTGCCGACCACGACGGCG------GCGACGACTACTACTATCGCACGAGCCCTAAGAACTT
CCAAGAGGAAGACGGGACCGCGGCCGCCGGCAGCCCTGCCACCAGCGCCGCCTACTGGGCGACGCACCGAGCGGAGCTGG
CCAGGGTGTCCGAGCTAGTCTCCTCGGAGGTGCCAAGGTCGAGACTGGACGCCGCCAGCGTGCAGCCGGAGCGACGGGAC
GTCGGCGCCGACATAGAGAGCGCCCTGCTCGATGCCTTGGTGCTGGAGCTCGTCATGGATCTCGGTGGTTGCTAATCGA-
-------TGACGCCCAATCCGCCA---------------GTGTAGGTGCAGGACCAAGAACAGAGCGGCCACCTCTGTGT
TGCGTTGCTCTGTTTTTGTTG-AGTAGTTGCTCATAGGACGGGCCCT---------TGCCAAGTGGAGGCTGTCGACAA-
-------AAATAAAATATATTAATTAATTGATTTGTTCTTTCTTTGAGAAAATTGATTTGTCCTTTATGGTTAGTAGTAG
TATGTATGCATGTGCAATGCACATCTTAAAAGAATGGAGTGATTTTGAAGTGTGACTCGAAAAAATATAATGGAGTGATT
TTGATAAATGGAATTCCACCCACAATTGTTTTTAATATTCATACAAAAAAAGTCTACATTAACATATAAAACACTGGTGG
TTCCTTAAAAAACTGTATGTTACTCTATTATTTTTTTCTTCCCATTCTCCTCCCAAACCTTCTTATCTGGGGTCAAGTCG
TCATGCGCTCAAGCAGTAAAATATAGCCCATGAGGCATCACATATGGGCCTTTTTTTCCTGGAAGGGCCACGTGAATATT
CTAGAACACAGCAGAGGCAACACCAGTCTACTGTTCATGGCGAATCCGGCTGATCTTAGCCCTTGGATTTTGGAGACCAA
CGGTTATGATTGAAGCTCTGGATCCATCTCAAAACTGATACACTATATAGTAGTATAGATATGGGCATCTCTAGCAGACC
CCATGTAATGCCTCGATACATAAAATAACCGTCAAAATATGGGTCCATATAAAAAATGCTACCCCATCAGACCCCGCAAA
TGCGTCGGAGCCGTAAATTTTTTTAAAGGGCGCGGAAAACATCCCTGTCAAACCTGTGAAAATAAGGATTTTAAAGCCGA
CCCGAACGGGCCATGTATACGTGAAAGCCCGTTGACGGGAATTCAGCTGCCATCGGAAACTTCATGGCTTGCTCCCGTCC
GCCCGTCCTCGGCCACCGGCGCCCGCCCCGACTGCCGCGCTCGCCAGCTGTTCGCCATGCTCGCCGGCCGTCCGTC
>chr3D_312
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------------------CAGGACGGA
GGTATTGCAACCTAATTCGCAGCACTTGCCCTTTTCAGTTCTGATGATTCAAAACACCCAAAGCAATTGCAGTTCCTTCA
TTCAATGCGAAGGTACATTGATCACTGCCCTCGCCACAAACACACACCAACTCAAAAGCCAGGAGCTCCATCTTTTTCAC
CTGGTGATTTGACCTATCATATACATTCTCC--------ATACTACCTGTCCCGCACAAATCTCTCCACAC----CATGG
GCACATTTATTTTGTAACAACTTGGGAGGGGAACTTTTGGTCTATGGGGACATATACACCCTATATGGATTTTTTTTAGT
AATTCAACAAAAAGTCAAAAAATTCTGAAAATATTTTTGAAATAAAGTTGACCTTACATTGTACTTGTCAGAAAAATTTC
ACAAAAAAATCCTCCTTTGACTTCTTTTCAAAAAAGACAAAATTTTGGCCAAAATAATGTGAATAGTGACCTATAATAGC
AAATATTTTTTGTCTTTTTCGCTGTGAAATCAATATTGGGTTTTTTCGTGGAAATATATACTAGTGCAAAAGTAAGTCAA
GTTTATTCTAAAAAAACTTCTAAACTATTTTGACTTTTTGTTTAATTATTAAAAAAATTCTCCATATAAAATGTATATAC
AACCAGAAACCAAAGTGTATTTCCCTAACAAGTTGTTCTTTCTTAGAGATGTCACA------------------------
---------CACAATGAGGTCACTCATGCATGC-AACACCGAGCCCAAACAGGCAAACACCAAAAATAGCATGACTTTTG
TTAAGGTGCTAGTCATATGTAG----TCGTCTGTATA------TAACAAGGCAGAAC-AAATCGAACCTTGTCTGATGAT
CATAATC-----------------------------GAATCTCCTAACCTTCATGCG----TGTCTTCCTATCACCGCAC
AATATATTCTTTGTCTCGTCGTC---TCTTCTCAG-AAAACACGTTTAGTTGGCCTTCTCTTCTTACTTTTAAGCACCCC
ACGTCCACCACACACCCATCTCCAACCCCACCTCATCTTC---TCCT---AGCTCATTGT-------TCAAAGTTCAAAC
ACATAGTTTCTGTT------------TCTA-------CTTCCTCATTGCCCATAAGCTCCT--------GCG--------
-----------------AATGGCGTGCCTGTCCCCCTCGCCGTCCGGCCGGCGCCTGTCGGAGCTGCTGGAGGAGAGGCA
GGAGCCCTTCTTCCTAGACCTCCACCTCCTGGAGAAGGGCTGCTCGGGCCGGCTCCTCGACGGCTATGACACCGCCCTGT
GCTGGCCAGCCGCAGCCGCCGGCAACGACGCCGCATCCGTGCTCAAGCGACTCACCAGCAAGAAGAAGAAG---GCGGCA
GCGAGCACCCGTGGTA---------AG------------CAGCAACCGGCGGCGGGCTCCGGTCTCCTCCGGCTGCTGCT
CTCCAAGATCCTCCACGGCAAGGCGGCCAACCAG---AAGCCCGCCGCCCTGCAGTGCTCCGAGTCCTTCAAGAGGGTCG
CGCCGTCGCTGTTGCCTTGCTCC---AAGCATCTCGACGCCGTGAAGCTCAGGGCCGACGCAGGGGTCGTCGGTGGCC--
----AGGAGACGGAGTATTCCGACTCCGAATACGACGACGAGAAGCAGCAGAGCCCAGTCTCCGTTTTGGAGCACCCGTT
CGAGAGCTCTCCTGTCCACGGCCAGAGCAGGTTCTCCTACGTGCAAGACTCGCGCAAGAACGCCATGGCCGTCGTCCGGG
AGCTC------CTCATGGAGATGGAGACGGCGTACACGCCTGCGCTGCGCACCCAGTTGTTCGCCAAGTCTGAGGACCTC
GTCAATGACGCCAACGATCTTGTCGAGCACGACGGCGACGGCGACGACGACTACCACTATCGCACGAGCCCTAAGAACTT
CCATGAGGACGATGAGAACGCGGCCGCCGGAAGCTCTGCCACCAGCGCCGCCTACTGGGTGACGCACCGAGCGGAGCTGG
GCAGGGTGTCCGAGCTAGTCTCCTCGGAGGTGCCAAGGTCGAGACTGGACGCCGCCAGCGTGCAGCCGGAGCGACGGGAC
GTGAGCGCCGACATAGAGGTCGCCTTGCTCGATGCTTTGGTGCTGGAGCTCGTCATGGATCTCGGTGGCTGCTAATCGAA
TAATGGATGGCGCCCAATCCGCCA---------------GTGTAGGTGCAGGACCAAGAACAGAGCGGTGACCTCTA---
--CGTTGCTCTGTTTTCGTTG-AGTAGTTGCTCATAGGAAGGGCCCTGGTACTCAGTGCCAAGTGGTGGCTGTAGACAA-
-------AAATAAAATATATTAATTAATTGATTTGTTCTTTCTTTGAAAAAATTGATTTGTTCTTTATGTGTTA------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------
>chr3A_468
CCATT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TTTTCAC
CTGGTGATTTGACTCATCATATACATTCTCC--------A------------------------------C----CATGG
AGACATTTTGCCACAGA---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------TTGTTCTTTCTTAGAGATGTCGCAGGCACATA----------------
------ATACGCATTGAGGTCACCCGTGCATGC-AGCACCCAGCCCAAACG--------CCAAAAATAGCACGACTTTTG
TTA-GGTGCTAGTCATATGTAG----TCATCAGTATCTGTGTTTATAAAAACAGAACAAAATCAAAGCTTGTCTGATGAT
CATAACAAGAGACAAGACAGAGGCACCAACTTAAAAGAATCCCCTAACCTTCATGCG----CGTCTTCCTATCACCGCAC
AATATATTCTTTGTCTCATCGTC---TCTTCTCAG-AAAACACGTTTAGTTGGCCTTCTCTTCTTA----TAAGCACCCC
ACC-CCACCCCACACCCATCTCCAACCCCAGCTCCTCTTCTCCTCCT---AGCTCATTGT-------TCAAACTTCAAAC
ACATATTTTCTGTCTACTCTCTAGTCTCTA-------CTTCCTCATTGCCCATAAGCTCCT--------GTG--------
-----------------AATGGCGTGCCTGTCCTCCTCGCCGTCCGGCCGGCGCCTGTCGGAGCTGCTGGAGGAGAGGCA
GGAGCCCTTCTCCCTCGACCTCCACCTCCTGGAGAAGGGCTGCTCGGGCCGGCTCCTCGATGGCTATGACACCGCCCTGT
GCTGGCCAGCCGCAGCCGCCGGCAACGACGCGGCATCCGTGCTCAAGCGACTCACCAGCAAGAAGAAGAAG---GCGGCA
GCGAGCACCCGTGGTA---------AG------------CAGCAACCGGCGGCGGGCTCCGGGCTCCTCCGGCTGCTGCT
CTCCAAGATCCTCCACGGCAAGGCGGCCAACCACAACAAGCCCGCCGCCCTGCAGTGCTCCGAGTCCTTCAAGAGGGTCG
CGCCGTCGCCGTTGCCCTGCTCC---AAGCATCTCGACGCCGTGAAGCTCAGGGCCGACGCAGGGGTCGCCGGCGGCC--
----AGGAGACGGAGTATTCCGACTCCGAGTATGACGACGAGAAGCAGCAGAGCCCCGTCTCCGTTTTGGAGCACCCGTT
CGAGAGCTCTCCTGTCCACGGCCAGAGCAGGTTCTCCTACGTGCAAGACTCGCCCAAGAACGCCATGGCCATCGTCCGGG
AGCTC------CTCATGGAGATGGAGACGGCGTACACGCCTGCGCTGCGCACCCAGTTGTTCGCCAAGTCTGAGGACCTC
GTCAATGACGCCAACGATCTTGCCGACCACGACGGCG------GCGACGACTACTACTATCGCACGAGCCCTAAGAATTT
CCACGAGGAAGACGGGACCACGGCCGCCGGAAGCCCCGCCGCGAGCGCCGCCTACTGGGCGACGCACCGAGCGGAGCTGG
CCAGGGTGTCCGAGCTAGTCTCCTCGGAGGTGCCAAGGTCGAGACTGGACGCCGCCAGCGTGCAGCCGGAGCGACGGGAC
GTCAGCGCCGACATAGAGACCGCTTTGCTCGATGCTTTGGTGCTGGAGCTCGTCATGGATCTCGGTGGCTGCTGATCGA-
-------TGGCGCCCAATCTGCCA---------------GTGTAGGTGCAGGACCAAGAACAGAGCGGCCACCTCTGCG-
----TTGCTCTGTTTTTCTTGAAGTAGTTGCTCATAGGCCGGGCCCTAGTACTCAGTGCCAAGTGGAGGCTGTAGACTGA
TAAGCAGAAATTAAATATATTAATTAATTGATTTGTTTTTTGAACACTT-AATTGATTTGTTCTTTATGGCTTA------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------
>chr3B_468
CCATT---------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------------------TTTTCAC
CTGGTGATTTGACCCATCAGATACATTCTCC--------A------------------------------TCATGCATGG
ACACATTTTGCCACAGA---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------TTGTTCTTTCTTAGAGATGTCACAGGCACATA----------------
------ATGAACACTGAGGTCACCCATGCATGC-AACACCCAGCCCAAACG--------CCAAAAATAGCATGACTTTTG
TTAAGGTGCTAGTCTTATGTACGTGGTCATCTGTAT----ATT-AACAAAACAGAACAAAATCAAACCTTGTCTCATGAT
CGTAACAAGAGACAAGACAGAGGCACCAACTTAAAAGAATCTCCTAACCTTCATGCG----TGTCTTCCTATCACCGCAC
AATATATTCTTTGTCTCATCGTCTCTTCTTCTCAG-AAAACACGTTTAGTTGGCCTTCTCTTCTTA----TAAGCACCCC
TCC-ACACCACACACCCATCTCCAACCCG-CCTCCTCTTCTCCCCCT---AGTTCATTGT-------TCAAAGTTCAAAC
ACATATTTTCTGTC------------TCTACTCTCTGCTTCCTCATTGCCCCTAAGCTCGT--------GCGGTGGTCTT
CGTCCTTTTGCGACGCTAATGGCGTGCCTGTCCTCCTCGCCGTCCGGCCGGCGCCTGTCGGAGCTGCTGGAGGAGAGGCA
GGAGCCCTTCTCCCTCGACCTCCACCTCCTGGAGAAGGGCTGCTCGGGCCGGCTCCTCGATGGCTATGACACCGCCATGT
GTTGGCCAGCCGCAGCCGCCGGCAACGACGCGGCGTCCGTGCTGAAGCGACTCACCAGCAAGAAGAAGAAG---GCGGCA
CCCAGCTCCCGTGGTA---------AGAAGCGGCAGCAACAGCAACCGGCAGCAGGCTCCAGTCTCCTCCGGCTGCTGCT
CTCCAAGATCCTCCACGGCAAGGCGACCAACCAG---AAGCCCGCCGCCCTGCAGTGCTCCGACTCCTTCAAGAGGGTCG
CGCCGTCGCCGTTGCCTTGCTCCTCCAAGCATCTCGACGCCCTGAAGCTCAGGGCCGACGCAGGGGTCGTCGGCGGCC--
----AGGAGACGGAGTACTCCGACTCCGAATACGACGACGAGAAGCAGCAGAGCCCGGTCTCCGTTTTGGAGCACCCGTT
CGAGAGCTCTCCTGTTCACGGGCAGAGCAGGTTCTCCTACGTGCAAGACTCGCCCAAGAACGCCATGGCCATCGTCCGGG
AGCTC------CTCATGGAGATGGAGACGGCGTACACGCCTGCGCTGTGCACCCAGTTGTTCGCCAAGTCCGAGGACCTC
GGCATTGACGCCAACGATCTTGTCGACCACGACGCCG------ACGACGACTACTACTATCGCACGAGCCCTAAGAACTT
CCAAGAGGAAGACGGGACCAGAGCCGCCGGAAGCCCCGCCACCGGCGCCGCCTACTGGGCGACGCACCGAGCGGAGCTGG
CCAGGGTGTCTGAGCTAGTCTCCTCGGAGGTGCCAAAGTCGAGACTGGACGCCGCCAGCGTGCAGCCGGAGCGACGGGAC
GTCGGCGCCGACATAGAGAACGCCTTGCTCGATGCTTTGGTGCTGGAGCTCGTCATGGATCTCGGTGACTGCTAATCGA-
-------TAGCGC--------CCA---------------GTGTAGGTGCAGGACGAAGAACAGGGCGGCGACCTCTGCGT
TGCGTTACTCTGTTTTTGTTG-GGTAGTTGCTCATAGGCCGGGCCCT---------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------
>chr3D_471
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------TTTTTTTCAC
CTGGTGATTTGACCCATCATATACATTCTCC--------A------------------------------CCATGCATGG
ACACATTTTGTCACAGA---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------TTGTTCTTTCTTAGAGATGTCACAGGCACATACTCATCTGTCAAGGTG
CTAGTAATACACATTGAGGTCACCCATGCATGG--ACACCCAGCCCAAACG--------CCAAAAATAGCATTACTTTTG
TCAAGGTGCTAGTCATATGTAC----TCATCTGTATCTGTATT-AACAAAGCAGAACAAAATCAAACCTTGTCTGATGAT
CACAACAAGAGACAAGATAGAGGCACCAACTTAAAAGAATCTCCTAACCTTCATGCG----TGTCTTCCTATCACCGCAC
AATATATTCTTTGTCTCATCGTCTCTT---CTCAG-AAAACACGTTTAGTTGGCCTTCTCTTCTTA----TAAGCG----
-CC-CCACCACACACCCATCTCCAACCCTACCTCCTCTTCTCCTCCT---AGCTCATTGT-------TCAAAGTTCAAAC
ACATATTTTCTGTC------------TCTACT-------TCCTCATTGCCCGTAAGCTCCT--------GTG--------
-----------------AATGGCGTGCCTGTCCCAGTCGCCGTCCGGCCGGCGCCTGTCGGAGCTGCTGGAGGAGAGGCA
GGAGCCCTTCTTCCTCGACCTCCACCTCCTGGAGAAGGGCTGCTCGGGCCGGCTCCTCGACGGCTATGACACCGCCCTGT
GCTGGCCAGCCGCAGCCGCCGGCAACGACGCGGCGTCCGTGCTCAAGCGACTCACCAGCAAGAAGAAGAAGAAGGCGGCA
GCGAGCACCCGTGGGAAGAAGTGGCAG------------CAGCAGCCGGCGGCGGGCTCCGGGCTCCTCCGGCTGCTGCT
CTCCAAGATCCTCCACGGCAAGGCGGCCAACCAG---AAGCCCGCCGCCCTGCAGTGCTCCGAGTCCTTCAAGAGGGTCG
CGCCGTCGCCGCTGCCTTGCTCCTCCAAGCATCTCGACGCCGTGAAGCTCAGGGCCGACGCAGGGGTCGGCGGCGGCC--
----ACGAGACGGAGTACTCCGACTCCGAATACGACAACGAGAAGCAGCAGAGCCCGGTCTCCGTTCTGGAGCACCCGTT
CGACAGCTCTCCTGTCCACGGCCAGAGCAGGTTCTCCTGCGTGCAAGACTCGCCCAAGAACGCCATGGCCATCGTCCGGG
AGCTC------CTCATGGAGATGGAGACCGCGTACACGCCTGCGCTGCGCACCCAGTTGTTCGACAAGTCTGAGGACCTC
GTCAATGACACCAACGATCTTGTCGACCACGACGGCG------ACGACGACTACTACTATCGCACGAGCCCTAAGAACTT
CCATGAGGACGACGAGACCGCGGCCGCCGGCAGCCCCGCCACGAGCGCCGCCTACTGGGCGACGCACCGAGCGGAGCTGG
CGAGGGTGTCCGAGCTAGTCTCCTCGGAGGTGCCAAGGTCGAGACTAGACGCCGCCAGCGTGCAGCCGGAGCGACGGGAC
GTCGGCGCCGACATAGAGACCGCCTTGCTCGATGCTTTGGTGCTGGAGCTCGTCATGGATCTCGGTGGCTGCTGATCGA-
-------TGGCGC--------CCAATCCGCCG-------GTGTAGGTGCAGGAGGAAGAACATAGCGGCGACCTCTACG-
----TTGCTCTGCTTTTGTTG-GGTAGTTGCTCATAGGCCGGGCCCT---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
>chr3B_552
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------CTTAGAGATGTCACACGCACACGC---------------
--------ACACATTGAGGTCACCCATGCATCCAAACACCCAGCCCAAACA--------CCAAAAATAGCATGACTTTTG
TTAAGGTGCTAGTCATATGTAG----TCATCTGTATCTGTATTTAACAAAACAGAGC-AAATCAAACCTTGTCTGATGAT
CATAACAAAGAGACAAATC-AGACATCAACTTAAAAGAATCTCCTAACCTTCATGCATGCATGTCTTCCTCTCATTGCAC
AACATATTCTTTGTCTCATCCTTTCTT---CTGAG-AAAACACGTTTAATTGGCCTTCTCTTCTTA----TAAGCACC--
----CCACCATACACCCATCTCCAACCCCACCTCCTCTTC---TCCTGCTAGCTCATTGTTCAAAACTCAAAGTTCAAAC
ACATATTTTCTGTC------------TCTAGC-------TCCTCATTGCCCATAAGCTCCCGTGAGGCCGTG--------
-----------------AATGGCGTGCCTGTCCTCCTCGCCGTCTGGCCGGCGCCTGTCGGAGCTGCTGGAGGAGAGGCA
GGAGCCCTTCTTCCTCGACCTCCACCTCCTGGAGAAGGGCTGCTCGGACCGGCTCCTCGACGGCTATGACACCGCCCTGT
GCTGGCCAGCCGCAGCCGCCGGCAACGACGCGGCGTCCGTGCTCAAGCGACTCACCAGC---AAGAAGAAGAAGGCGGCA
CCCAGCTCCCGTGGTAAGAAGCTGCAG------------CAACAGCCGGCGGCGGGCTCCGGGCTCCTCCGGCTGCTGCT
CTCCAAGATCCTCCACGGCAAGGCGGCCAGCCACAG---GCCCGCCTCCCTGCAGTGCTCCGAGTCCTTCAGGAGGGTCT
CGCCGTCGCCGTTGCCTTG---CTCCAAGCATCTCGATGCCGTGAAGCTCAGGGCCGACGCAGAGGTCGT---TGGCC--
----AGGAGACGGAGTACTCCGACTCCGAATACGACGAGGAGAAGCAGCAGAGCCCAGTCTCCGTTTTGGAGCACCCGTT
CGAGAGCTCTCCCGTCCACGCCCAGAGCAGGTTCTCCTACGTGCAAGACTCGCCCAAGAACGCCATGGCCATCGTCCGGG
AGCTC------CTCATGGAGTTGGAGACGGCGTACACGCCTGCGCTGCGCACCCAGTTGTTCGCCAAGTCCGAGGACCTC
GGCATTGACGCCAACGATCTTGTCGACCACGACGCCG------ACGACGACTACTACTATCGCACGAGCCCTAAGAACTT
CCAAGAGGAAGACGGGACCAGAGCCGCCGGAAGCCCCGCCACCGGCGCCGCCTACTGGGCGACGCACCGAGCGGAGCTGG
CCAGGGTGTCCGAGCTAGTCTCCTCGGAGGTGCCAAAGTCGAGACTGGACGCCGCCAGCGTGCAGCCGGAGCGACGGGAC
GTCGGCGCCGACATAGAGAACGCCTTGCTCGATGCTTTGGTGCTGGAGCTCGTCATGGACCTCGGTGGCTGCTAATCGA-
-------TGGCGC--------CCAATCCGCCG-------GTGTAGGTGCAGGACGAAGAACAGAGCGGCGACCTCTGCG-
----TTGCTCTGTTTTTGTTG-GGTAGTTGCTCATAGGCCGGGCCCTACTACTCAGTGCCAAGTGGAGGCTGTAGAC---
-------AAAATAAATATATTAATTAATTGATTTGTTCTTT-TTTGAGAAAATTCTTTTGGTCTTTATGCGTTA------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
>chr3A_1209
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------------AGACG---GCGGCA
GGGAGCACCCGTGGTA---------AGAAGCGGCAGCAGCAGCAACGGACGGCGGGCTCCAGGCTCCTCCGGCTGCTGCT
TTCCAAGCTCCTCCACGGCAAGGCGGCCAACCAG---AAGCCCGCCGCCCTGCAGTGCTCCGAGTCCTTCAAGAGGGTCG
CGCCGTCGCTGTTGCCTTG---CTCCAAGCATCTCGACGCCGTAAAGCTTAGGACCCACGCAGATGTCGT---CGGCGAC
CAGAAGGAGACGGAGTATTCCGACTCCGAATACGACGACGAGAAGCAGCAGAGCCGTTTTGA------------------
----AGCACTCCTGTCCACGGCCAGAGCAGGTTCTCCTGCGTGCAAGGCTCGCCCAAGAACGCAATGGCCATCGTCCGGG
AGCTCCTGCTCCTCATGGAGATGGAGACAGCGTACACGCCTGCGCTGCGCACCCAGTTGTTCGC-AAGTCTGAGGACCTC
ATCAATGACGCCAACGATCTTGCCGGCCACGACGGCG------ACGACGACTACTGCTATCGCACGAGCCCTAAGAACAT
CCACGAGGAAGACGGGACCACGGCCGCCGGAAGCCCCTCCACGAGCGCCGCCTACTGGGCGACGCACCGAGCTGAGCTGG
CCAGGGCGTGTGAGCTAGTCTCCTCAGAGGTGCCGAGGTCGAGACTGGACGCCGCTAGCGTGCAGGCGGAGCGACGGGAC
ATCAGCGCCGACATAGAGACCGCCTTGCTCGATGCTTTGGTGCTGGAGTTCGTCATGGATCTCGGTGGCTGCTAATCGA-
-------TGGCGC--------CCAATCCGCCATTGTAGCGTGTAGGTGCAGGACAAAGAACAGAGCGGTGACCTCTGCC-
----TTGCTCTGTTTTTGTTG-AGTAGTTGCTCATAGGTCGGGACCT---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
>SNPs
-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
----SSS-SS--S-----------------------------------------------------S-------------
-----------S---------S---------S------------------------------------------------
------------------------------SSSSSSSSS-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S------------
--------------------------------------------------------------------------------
----------------------------------SS-----------------------------------------S--
-----------------------------------------------S----------S---------------------
------------------------------------------------------------------------SSS--S--
------S-------------------------------------------------------------------------
---------------S---------------------------------S------------------------------
----------------------------------------------------------------------------S---
----------------S-------------------------------S-------------------S---------S-
---------------S-------S------------------------------------------S-------------
-----------------------------------------------------------------------S--------
--------------------------------------------------S-----------------------------
------------------------------------------S-------------------------------------
-------------------------------S-------------------------------------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------S----S----------S--------------------------------S-----------
---------S-------------------------------------------------------------------S--
-------------------------------------------------------------------------S------
-------------------------------------------------------------S--------S-SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_83
---------------------------------------------------------------GTTCATGCTGCACGATG
CTT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
>reverse_2549
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------TTGCTAATCGAT
GACGCCCA------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
>forward_2236
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TTGTTCGCCAAGTCTGAGGG----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
>reverse_3159
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GGCGAATCCGGCTGATCTTA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
