>input_sequence_63940
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--------------------------------------------------------CGGCCATCCGAAGATTCAGCG--G
GGACACCTCGGCAGCTGCCGCGCAGGTTCACACGGACGGGCTCGCCTTT-CTTTCCTTCCCCCGACGAGCGATCGGCGTC
GGCGAGAGCGAAATCCCCGCACCAAAGAATACGCGTCGCCGTCAAGCC-----------GTAGGTCACAGGTTTGCATCT
TCTCGCCCCTT-----CCGGAGCCCCCACTCGGCCAC--------TCACTGACACCTTT---------------------
----ACTCCGCCTTTTCAGCCACCGGTCTGGTCGGTCTCGCCGGGGCGGCGTCGGTTGGGACCGGAGGGAGGTACGCGAG
GGGCGGACGGTGGAGGAGCGATGGAGCCCCTGGAGGCGGCGATAGCGATCGTGTTCAACGCGCTGCTGCTGGTGTTCATG
GTGAAGCTCTTCTTCGCCATGTTCCAGATGAAGCTCGTCGTCATCCTCTTCTACCTCGTCGTCCTCCTCTTCGCCCTCGC
CTTCTCCGGCCGGGGCCCCGCCGGCTTCTAGGTTAGGTCCTTCGTTTTTTTTCCCCTTGCTTCGGTTGGCTCCGGATCCA
TCCTTGGAGCTGTAACAGCGGTGC-------------------------TAGACCATACCTACCTCGGTGCATGTC----
-----TGGTTGGTTGGTTTAACAAACTGGGGAAATTTAGTCTACAGTATCATGGTGACTCCGGGCTGCAAATTGTGTGAA
CTCGGCGAATTAAGAG--------GTAGTACAGCTTTATATGAGCCCTAGTTG-AGATTATGTGGACTTAGTCGGCGCTT
TCTTCGATTGTTCTGTACAATCTTACTTGTGGATTCGTGATGTAGCCTCTGCTAGGCGTGCTCTTCTTCTTGAAAATCCT
GAGGCAGAGTGTTCTTTTCTTTCTCCTAGTTCGTGATCGACAAGCATTAATTTAGTGTTCATTCATTCCCAAGGGAAAGA
AATTTATA--------AACTGGGATGACAGTTTTGTTTCTTGTCTGAAGAAAACTGTCAATCATGATTTTGGGATTAAAT
TGTGAAATTGTTTGTTTG--------------------------------------------------------------
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>chr4B_1_TraesCS4B01G038500
CGCCGCTGCCGCACCACATCCATGTCGCCCCCGATATGCGCCACCGCCGCCGATCTGGCCGGAAAGGAGCGCCGCCTCCC
AACCAGATTGAGATCCGAGGAGAAAACCGTCGCCGTCGCCACGCCACAAGGGCTTTGCCCTATGACGCCCCGGGCGACGG
CGGCGGAGGTGAGGCGCGGCTGTAGGAGGAGGGCGGGGGCTCCCCGGTGCGGGGCGGCGCCGCCGCACGGGGGAGTTGCT
ACAAATTAGTGCATGACTTGGCGGTGTGATTTTTCAAGACTGTTTTCTACGAATGGATTTCGCCACAAATTGACCGCCAG
ACATTGTGGCATGGCAAATCAAACTTCTTTTACGGTATAAACTATGTCGTCACGAGGAAGGCGATTTTCTTTAGCAAGCT
TGGTAAAAAATCGTTCTGCCATGGAAAACGTAATTTGCCATAGAAAAACGTTCTGCCATGATTAGAAATCTGATGTTACC
GCTACAGACTTGGTAGTAGTCCTGGCCATCTTAGGTCCGGCCCTGTTGGCCCACCCAGGCCCGGCCCTAAAATCTAGGGC
CTAGGCCCGATGGGCTTGCCCATGGGCCGGGCTTGGGCCTGACTTTTGAGCCCACCAATAGGGCCTGGACGGGCTTGGGC
TTGGCATATTGGCATTTTAAGAAAGAGGCCCGGCCCACGGCCCTAAGCCCTAAGGGCTTTTTACCAGATGGGCCGGGCTT
GGGCTTGAAAAGTAGGCCCAATGATAGGGCCTGTGAGGGGCTGGGCCTCAGTTTTCTGCCGTGGGCTTTTTCAGGCCCGG
CGCGGTCCATGGCCAGATATACTTGGTAGACATCACGG----GGTCTACGGGAAAGTGTGCAGATCCTTCGATTCCAGC-
---TGACAGGACCGCGGGAATTGGCCGGACGGTGGCGAA---GCTGACAAGTGACATGGAAGGGGATCCCTCGGCCGCGT
CC-----CTGTGTGTACGCGTAGGCTCGACCTACCTTTAATTATAACCTTCCGTGTCGGCCATCCGAAGATTCAGCG--G
GGACACCTCGGCAGCTGCCGCGCAGGTTCACACGGACGGGCTCGCCTTT-CTTTCCTTCCCCCGACGAGCGATCGGCGTC
GGCGAGAGCGAAATCCCCGCACCAAAGAATACGCGTCGCCGTCAAGCC-----------GTAGGTCACAGGTTTGCATCT
TCTCGCCCCTT-----CCGGAGCCCCCACTCGGCCAC--------TCACTGACACCTTT---------------------
----ACTCCGCCTTTTCAGCCACCGGTCTGGTCGGTCTCGCCGGGGCGGCGTCGGTTGGGACCGGAGGGAGGTACGCGAG
GGGCGGACGGTGGAGGAGCGATGGAGCCCCTGGAGGCGGCGATAGCGATCGTGTTCAACGCGCTGCTGCTGGTGTTCATG
GTGAAGCTCTTCTTCGCCATGTTCCAGATGAAGCTCGTCGTCATCCTCTTCTACCTCGTCGTCCTCCTCTTCGCCCTCGC
CTTCTCCGGCCGGGGCCCCGCCGGCTTCTAGGTTAGGTCCTTCGTTTTTTTTCCCCTTGCTTCGGTTGGCTCCGGATCCA
TCCTTGGAGCTGTAACAGCGGTGC-------------------------TAGACCATACCTACCTCGGTGCATGTC----
-----TGGTTGGTTGGTTTAACAAACTGGGGAAATTTAGTCTACAGTATCATGGTGACTCCGGGCTGCAAATTGTGTGAA
CTCGGCGAATTAAGAG--------GTAGTACAGCTTTATATGAGCCCTAGTTG-AGATTATGTGGACTTAGTCGGCGCTT
TCTTCGATTGTTCTGTACAATCTTACTTGTGGATTCGTGATGTAGCCTCTGCTAGGCGTGCTCTTCTTCTTGAAAATCCT
GAGGCAGAGTGTTCTTTTCTTTCTCCTAGTTCGTGATCGACAAGCATTAATTTAGTGTTCATTCATTCCCAAGGGAAAGA
AATTTATA--------AACTGGGATGACAGTTTTGTTTCTTGTCTGAAGAAAACTGTCAATCATGATTTTGGGATTAAAT
TGTGAAATTGTTTGTTTGTTTCTTCAATTCAAAGCAACCATATTCACCACAAGCCCCCT---------------------
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------------------------------------------------------------------------AATAATGC
TGCTAACAATAACTTCTGGGACTGGCTTTATTGAGCTGTTAAAGTCATATATGATACTATCATAGACTAGTATCATATGC
ATGATACTAACTTGTGATATTATCCATTATAACCAGCCTGACACACCAGGCTAGTAACTTCGTTCGA-------------
---------------------------------------------TAATTTCTCCCGGAACCGTCCACCTCGTCATGTGG
CTTCAATAATTGAAGAAGCTTCTCGGAATGCAAAATAATTAG-----ATAATCTATTCGCCACACGGCCACCGAGTTGTT
CAAGACTTTCCAATAGAAAAAGGAAAAGGAGAGAACACGTTATCACCTCGGCTATCATCCATCACTTCACTTGTAACGAC
GCGAATCAGCGGAATCATGTCCATACAAATTTCTCTTTCGGTCTTGCATAC-TTTTTGGATTCTTGTAGGAGTATATAAG
CATTCTTAAAATTTCTCGCGTTTGGAATTTTATGC-GCATATCTTGTTCCCAGGTTTTTTGTCATAACAAAATACCGTCA
TCTCATTATGTTTTGATAAACAGCCAACTTA-ATGCAGGTAACATTTGAAAAGTAATGGTCAGTGGAGTCCATGAACAAA
AGGCCAAGTAAAATGTATAGAATTGCGATAATCATCCTCTGAGCCCAGGCTCATCTGCACCCGCCCTAACGAAAAATATC
AAAACAAATACTAGAATTTTTTTAAAAAAAATTCATTTTTTTCATAGTAGATAATTTGATGCGTGAGGTCCGCTCCAATT
TTCAAATCATTTGGACATCTGATCCGATTTTTCTTTTTTGCCGAGAGCTGCTCAGATGTTCAAATGATTTCAAATTTGGA
GCGAACCTCACACATCAAATTTTCTACCATGATTTTTTTTTTGAATTTTTTATGATTTTTTTGACCGGGTGCATATGAGT
CTGGGCACCGAATCGCTGCATTCATAGAATTAACTCTCTTTAAGAAAAAATGATCAA
>chr4D_823
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----------------------TTGGTAGACATCACGCGGTCGGTCTACGGGAAAGTGTGCAGATCCTTGGATTCCAGCG
AGCTGACTGGACCGCGGGAATTGGCCGGACGGTGGCAAAAAAGCTGACAGCTGACATGGAAGGGGATCCTTCGGCCGCGT
CCGTCCCCTGTGTGTACGCGTAGCCTCGACCTGCCTTTAATTATAACCTTCCGTGTCGGCCATCCGAAGATTCAGCG--G
GGACACCTCGGCAGCTGCCGCGCGGGTTCACACGGACGGACTCGCCTTTCCTTTCCTTCCCCCGACGCGCGATCGGCTTC
GGCGAGAGCGAATTCCCCGCACCAAAGAATACGCGTCGCCGTCAAGCC-----------GTAGGTCACAGGTTTGCATCT
TCCAGCCCCTTCTCTTCCGGCGCCCCCACTCGGAACGGCCACTCATCACTGACGGGCACCTTTAGTTTCAGGG-------
---CACTCCGCCTTTTCAGCCACCGGTCTGGTCGG---------GGCGGCGTCGGTTGGGACCGGAGGGAGG--------
------------GAGGAGCGATGGAGCCCCTGGAGGCGGCGATAGCGATCGTGTTCAACGCGCTGCTGCTGGTGTTCATG
GTGAAGCTCTTCTTCGCCATGTTCCAGATGAAGCTCGTCGTCATCCTCTTCTACCTCGTCGTCGTCCTCTTCGCCCTCGC
CTTCTCCGGCCGCGGCCCCGCCGGCTTCTAGGT-----------TTTTTTCCTTCCTTGTTTCGGCTGGCTCCGGATCCA
CCTTTCGAGCTGTACAGCAGTGCTTCACACATCTTCCAGAGAATACTAGTAGATCGTACCTACCTACCTCGGTGGATGGA
TGTTTTGGTTGTTTGGTTTAACAAACAGGGGAAATTTAGTCTGTGATGATGA--CGACTCCGAGCTGCAGATTGTGTCAA
CTCGGCGAATTGAGAAGTACAGTAGTAGTGCAGCTTTATATGAGCCCTAGTTGCAGATTATGCCGACTTACTCGGCGCTT
TCCTCGATTGTTCTGTGCAATTTTACTTGTGGATTCGTGATGCAGCCTCTGCTAGGGGCACTCCTCTTCTTGAAAAACAT
TAAT----------------------------------------------TTAGTG-----TTCGTTCCCAAGGGAAAGA
AAATTGTA--------GAC---------AGTTTTGTTTCTTATCTGAAGAAAAATGTCAATCATGATTTTGGTATT-AAT
TGTGAAATTGTTTGTTTGTTCG---------AAGC-------------------CCCGTAAGTTCTTGTACAATCTAAGG
TGCTTAGAAGAGGTGCTCAGAGAAATAAATCAGGTTTTTTTTAAGGGCCGGTGTTTGTTCCTACAA-GTAGACGCTTAAG
TAGGCATCCTCTCCTGTAGAGATAAAAAACTCGGTTTATTTTACT----------------------------ATAATGC
CGCCAGCAATAACTTCTGGGAATGGCTTTATTGAGATGTTAAAAGATGAATTTGCAACGGTATGA---------------
------------------------------AAGCAAACTGACACACC-----GGTAACTTCGGTCGATGCCCATAGAGAT
AAGGGCTGAAGTACATTTTGTTTCATTCTAGTAGTATGAAAACTCTAATTTCTACGGGAACCGTCCACCTCGTCATGTGG
CTTCAATAATTGAAGAAGCTTCTGGGAATGCAAAAAATGATTAGATAATAATCTGTTCCCCGCACGGCCACTGAGTTGTT
CAAGACTTTTCAATAGAAAAAGGAAAAGAAGAGAACACGTTATCAACTCGGCTATCATCAATCACTTCACTTGTAACGAC
GCGAAT---------CATGTCCATAC-AATTCCTCTTTCGGTCTTACGTGCATTTTTGGATTCTTCTAGGAG--TATAAG
CATTCTTAAAATTTCTCCCGTTCGGAATTTTTATGTGCATAT----TTCCCAGTTTTTTT--------------------
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>chr4A_1005
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------------------------------------------------------------CATCCGAAGATTCAGCGGGG
GGACACCTCGGCAGCTGCCGCGCAGGTTCACACGGACGGACTCGCC-TTTCTTTCCTTGCCCCGACGCGCGATCGGCGTC
GCCGAGAGCGAATTCCCCGCACCAAAGACTACGCGTCGCCGTCAACCCGCCGCAGGTCAGTAGGTCACAGGTTTGCATCT
TCCAGCCCCTT-----CCGGAGCCCCCACTCGGGCTC--------TCACTGACGGGCACCTTTAGTTTCAGGGCACAGCC
AATCACTCCGCCTTTTCAGCCACCGGTCTGGTCGGTC----------GGCGACGGTTGGGACCGGAGGGAGG--------
------------GAGGAGCGATGGAGCCCCTGGAGGCGGCGATAGCGATCGTGTTCAACGCGCTGCTGCTGGTGTTCATG
GTGAAGCTCTTCTTCGCCATGTTCCAGATGAAGCTCGTCGTCATCCTCTTCTACCTCGTCGTCGTCCTCTTCGCCCTCGC
CTTCTCCGGCCGCGGCCCCGCCGGCTTCTAGGTTAGGTCCTTCGTTTTTTTCCCCCTTGCTTCGGTTGGCTCCCGATCCA
TCCTTCAGGCTGTACAGCAGTGCTTCA----TCTTCGAGAGAATACTAGTAGATCATACCTACCTCGGTGCATGTC----
-----TGGTTGGTT------------AGGAGAGATCTAGTCTGTGATGGTGA--TGACTCCGAGCTGCAAATTGTGTGAA
GTCGGCCAATTAACAAGTGC-----TAGTACAGCTTTATATGAGCCCTAGTTGCAGATTGTGTGGA-TTACTCGCCGCTT
TCTTCGATTGCTCTGTGCAATTTTACTTGTGGATTCGTGATGTAGCCTCTGCTATG---GCTCCTCTTCTTGAAAATCCA
GAGACAGAGT--TCTTTTCTTTCTCCTAGTTCGTGATAGACAAACATTAATTAGTG-----TTCACTCCCAAAGGAGAGA
AAATTACTATAAGAGGAACAGGCCTGACCGTTTTGTTTCTTATCTGAAGAAAAATCTCAATCATGATATTGGGATTAAAT
TGTGAAATTGTTTGTTCGTTCG---------AAGCAACCATATTCACCATAAGCCCCCTGAGATCTTTTACAATGCAAGG
TGCT-------------CAGAGAAATAAATTAGGTTTTTCTTAAGCACCGGTTTTTGTTTGTACATGGTAGATGTTTATT
TAGGCACCCCTTCTGTAAAGATAAAAAAACTCAATTTATTTTTTACTAAACGTCTTGCATTGTACAAGGTCTAATAATGC
TGCCAACAATAACTTCTGGGAATGGCTTTATTGAGATGGAC----------TTGCAACGGTACGA---------------
------------------------------AAGCAAACTTACACACC-----AGTAACTTCGTTCGATG-----------
-------------CATTTTGTTTCATTCTAGTA---TGAAAACTCTAATTTCTCCGGGAACCGTCAATTTTGTTTCATTC
TAGT----------------------------------------------------------------------------
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----------------------ATACAAACTTCTCTTTCGGTCTTGCATACATTTTTGGATTCTTGTT-GAG--TATAAG
CATTCTTAAAATTTCTCGCGTTTGGAATTTTAATGTGCATGTCTTGTTCCCGGGTTTGTTCTCAAAAGAAAATACCATCA
TCTCATCATGTTTTGATAAACGGTCAACTCAGATGTAGATAACAATTGGAAAGTAATGGTCAGTGGAGTCCATGAACAAA
AGGCCAAGCGAAATGTATAGAATT--------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS---------------S-------------------------------S----------
-------S----------------------------S------------SS------------------S----------
-----------------------S--------S-----------------------------------------------
---------------------------------------S---------------------------S------------
------------S-------------------------------------------------------------------
--SS-----------------------------S-S-----------------SSSSSS---------------------
-------------------------------------SSSSSSS----------------------------SSSSSSSS
SSSSSSSSSSSS--------------------------------------------------------------------
---------------------------------------------------------------S----------------
------------S--------------------------------------S----------------------------
-----S--------SSSSS-SSSS-----------------------------S--------------------------
--------------------------S---------------SSSS-SSSSSSS--------S-----------------
---------------S------------------------------------------------------S---------
----------------S----S----------------------------------S-S----S----------------
---S------SS-------------------------S-----S--------SSSSSSSSS-------------------
--S----------------S--SS-----------------S-----------S--------------------------
--------------------SSSSSSSSSSS------------------S------------------------------
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---S-----------------S-------------S-------SSSSS-SS-SSS-SSSSS--SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S--SS----------SSSSS----------------------------
-------------------------------------------------------S------------------------
-----------------------S-----------S-SSSSS------------S---S--S---------S--------
---------S------------------S----------------S-------------S--------------------
------SSSSSSSSS---------------------------------------------------------SS------
--------------------------------SSS-------------------------S---S--S--------S---
------S--------------S-S-----S-----S--S-----S---S-------------------------------
--------SS--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_265
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-----TTAGTGCATGACTTGGCGGT-------------------------------------------------------
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>reverse_1831
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----------------------------------------------------------------------GTCGGCGCTT
TCTTCGATTG----------------------------------------------------------------------
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>forward_651
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-----------------------------------------------------------------------GGCTTGGGC
TTGGCATATTG---------------------------------------------------------------------
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>reverse_2430
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-----------------------------TAACCAGCCTGACACACCAG-------------------------------
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