>input_sequence_63916
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--------------------------------------------------------------ATGGAGACGCGGAGCAGG
---CCATGGAGCTTTATGCTGTTCGCCGTCCTCGTCGCTGCGGCGTCGGGCTTCGTGCCGGCGGAGGCGACGGGCTGGTC
GAAAGGCTCGGCCACGTTCTACGGCGGCAGCGACGCCTCCGGCACCATGGGTAAGTTCGCCGGCCGGGCGCGCACTGCTA
GCCTCTGTTTACTTC------AGAGCTACCAGCAGGTACAGTGGAGTGGTTAAGCAGCAGACGTAGTTTTCAACGCGTGC
ATGGATGCAGGTGGAGCGTGCGGGTACGGCAACCTGTACTGGACGGGGTACGGGACGGGGACGGCGGCGCTGAGCCAGAC
GCTGTTCGGCGACGGCGCGTCGTGCGGGCAGTGCTACCAGGTGACGTGCGACCACGAGGCCGAGTCGCAGTGGTGCGTGC
CAGGGAAGTCGGTGACCGTCACGGCCACCAACCTGTGCCCGCCCAACTACGCCCTCGCGGGCGGCGACGGCGGCTGGTGC
AACCCGCCGCGCGCGCATTTCGACATGGCCCAGCCCGCCTGGCTCCACATCGGCATCTACAAGGGCGGCGTCGTGCCGGT
GCTCTACCAAAGGTACCCACTACACACCATTGCATGGGCGGTTTGACTTGGATGAATATTAGATAGATTAATCAGTATGT
GATGTTTTATTTA-------------------------------------------------------------------
--------TGTAGGGTGGCCTGCGAGAAGCGAGGAGGGGTGCGGTTCACCATGGGAGGGTTCGAGCACTTCCAGCTGGTG
CTCATCTCGAACGTGGCCGGAACCGGGGACATCAAGGCGGTGTGGGTGAAGGGGACGGCCACGGAGAGGATGCCGATGAG
CCGGAACTGGGGCGCCAACTGGCAGTCGCTGGCGGCGCTCGCCGGCCAGGCGCTCACCTTCGGGGTCACCGACACCGGCG
GCCAGACCGTCGTCTTCCCGAACGTCGTGCCGGCGTGGTGGAGCTTCGGCCAGGCCTTCACCTCCAACCTTCAGTTCTCC
TACTGA--------------------------------------------------------------------------
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----------------------------------------------------------------------
>chr4B_1_TraesCS4B01G271100
TGGCAGCTTATGCACCATTA---TCCCTGTGGGCTGTGGCCGCCGTCCTCAAGTGAGCTGCCGCTCCCCGCACGTTGTCG
CGGGAATATTTTGTAACATAT-----------------------------------------------------------
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----------------------------------------------CTCAATGTGATTCATTGTATGAAACATATATAAA
AGGATAGAACTGAAACTACATATAATTTATTATGTTTGATCACTATATAGTTGTAAAATGTTTATTAAATATAAATAGAA
TAATAGAATAGAAATTCGCATGTTGAGATAGGTCTTTTTTCATGCAGGTTTCATGATGAAATGACATGCTTGCATGTCGC
GAGACATATGGTAGTGAGTGTGGGCCTTTTCTCGTGCATGTTGTGTGATGATGTGGCATGCTTGCATGTTGAGAAAAATA
GTTAGTGGGGGCAAGCTATTTAGATATAGAAGATCCCAGGATTCATCTTCTCCTTCTTATCACCAACCCCGGCCCTCCTT
GTGTGGCATCGCATCTCAACTTTGGAAAATAAACTAACAACTCAGGAGGTGCATGACAAGTTCGCCGTCCTAGTAAGAAA
AGGCAAACAATTCCAGCTAATCATCC------------------------------------------------------
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------------------------------------------------------------------------CATTGTCG
AATTGAGCTGAGCAAGATTCATGGCGGAAACATGCAGAGAAACATGGAGCAATTCGACCGAC------------------
--------------------------------------------------------------------GATCAGGAGTTT
TTTTTTCTAACACTGTACTGTACATGGAAGCTAAACTACGAGGAAAGAAAC-------ATGGAGCAGCTCGACCGACGAT
CCAATCTGCGGGAAGCGCGCGGAATTCTAGCTGAGCGATCCAGTTTCCTGTGCACGTGTCATACGCGCCACCAATTCGCT
GCACCGGCCTGCAGGGTTAAAATTATGAAATCGATTCCACTCGATCGATCGCTCACTCACTCCCGCTACTTATTTAAACT
ACCGTGCGTACAGTGTAT-----------GTTGTAGGAGTAGTAGTAGAGTGGATCACTTGGGAGCTGTCTGGGATTAAC
TTTCACGTTTCACCGATCACGTAC----ACCGGCCATCACTCTCACTGACGATCTTGAGAAAATGGAGACGCGGAGCAGG
---CCATGGAGCTTTATGCTGTTCGCCGTCCTCGTCGCTGCGGCGTCGGGCTTCGTGCCGGCGGAGGCGACGGGCTGGTC
GAAAGGCTCGGCCACGTTCTACGGCGGCAGCGACGCCTCCGGCACCATGGGTAAGTTCGCCGGCCGGGCGCGCACTGCTA
GCCTCTGTTTACTTC------AGAGCTACCAGCAGGTACAGTGGAGTGGTTAAGCAGCAGACGTAGTTTTCAACGCGTGC
ATGGATGCAGGTGGAGCGTGCGGGTACGGCAACCTGTACTGGACGGGGTACGGGACGGGGACGGCGGCGCTGAGCCAGAC
GCTGTTCGGCGACGGCGCGTCGTGCGGGCAGTGCTACCAGGTGACGTGCGACCACGAGGCCGAGTCGCAGTGGTGCGTGC
CAGGGAAGTCGGTGACCGTCACGGCCACCAACCTGTGCCCGCCCAACTACGCCCTCGCGGGCGGCGACGGCGGCTGGTGC
AACCCGCCGCGCGCGCATTTCGACATGGCCCAGCCCGCCTGGCTCCACATCGGCATCTACAAGGGCGGCGTCGTGCCGGT
GCTCTACCAAAGGTACCCACTACACACCATTGCATGGGCGGTTTGACTTGGATGAATATTAGATAGATTAATCAGTATGT
GATGTTTTATTTA-------------------------------------------------------------------
--------TGTAGGGTGGCCTGCGAGAAGCGAGGAGGGGTGCGGTTCACCATGGGAGGGTTCGAGCACTTCCAGCTGGTG
CTCATCTCGAACGTGGCCGGAACCGGGGACATCAAGGCGGTGTGGGTGAAGGGGACGGCCACGGAGAGGATGCCGATGAG
CCGGAACTGGGGCGCCAACTGGCAGTCGCTGGCGGCGCTCGCCGGCCAGGCGCTCACCTTCGGGGTCACCGACACCGGCG
GCCAGACCGTCGTCTTCCCGAACGTCGTGCCGGCGTGGTGGAGCTTCGGCCAGGCCTTCACCTCCAACCTTCAGTTCTCC
TACTGACTCCTCCGCCGTACATTCAGCGGTCGGACACGAGATCGACTTCCCTGGTTCGCTTGGAGGCTCGC--TTCATCC
TATTTAGTCCCGTCCAATAATGGTGCAGACTAGTCTGGGTCTCAGGGTGGAAATGAGGCTAGCGTGGCGTAGTCGTGTGG
TCGAATACTAATGTGAACAGAAGATTGAGAGAAGCTGGAGTGGTTTCTGAGGTGAATTTTAAAATTGTTTGCGAAATTCA
AAAATTGATCCACCAGCGGAGTAGGCCTACCGGGGGTTTCGGAATTTTTGTATTCTTGGTTTTGCCTCGTTCTGTACGAT
CGATGTCAGTGAATA-TTTTTCCGTGAGGTAACATATTAAGGCAACAGACATTGACATGTAATCTCACGGA--AATATCA
ATTTCAATAATTCTAAAAAATGATCATGAATTTTAAAAAAAGTTTCAAATTTCAAAAAATGTTCACAAATTAGAAATGCT
CCAGTTTCCAAAAAATGTTTGCGAGTTTCAAAAACATTCCTGGATTTTAAAAAAATTTAATGACTTTGGAATAATATTAT
CAAATTCAAAAAA------------------TATTCAGGAATTTCAGTATTATTCCAAATACTTCCAGCAATGCTCACGA
ATTCAAAGAATCCATTTTTTAAGAATTTCAAAATTGTGTCCAAAATTCAAAAAATGTTCACGAATTTCAATATTTTTCCA
AATTTCAAAAACTGTTCCTGAATAACATTTAAAATGGTAACACACAAATATTATAATAAAAGATAAAGAGAAATAAGAAA
AAGGAAAAACACAAAATAAAACCACAAAAAGAAAGAAAGTGTTCTAGGAATGTTCTAGAACCTTCCCAAAACTCGCGTGG
AGGAAATCCTGAATGGGCCAGTCCGTATAGCACAAGGGCACTCACAGGCGCCACCCAT-GGTGCACGTTTGTCTCTAACC
CCTGTGGTATGCGGGGAACTGGAACAATCTATTGATCCAAGAGAACTGCTCGCTCCCCTTCGCTCGGTTT
>chr4D_2
-GGCAGCTTATGCACCTGGATTCTCCCTGTGGGCTGTGGCCGCCGTCCTCATGTGAGCTGCCGCTCTACTTACCAACA--
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--------------------------------ATCCCAGGATTCCTCTTCTCATTCTTATCATGGACCCCGGCCCTCCTT
GTGTGGCATCGCATGTCAACT--GGAAAATAAACTAACAACTCAGGAGGTGCATTACAAGTTCGCCGTCCT-GTAAGAAA
AGGCAAACAATTCCAGCTAATCATCCTGTTAGAGTTGTGTCGAATATTGTGTACAAGGTAGGTTACAGTTGGACTATGAG
TTGTATTGTGTTTACATAGGATGTGGAGTCGTGTTCTAGTAGGACACCTGTATTCTAGGCCTCTCTTATATAGCGGGGGT
AGACACACGATGTAACCTATGCCAACATAGTAGCACAGGCGCGCAAGGGGGAGCCGGCGGCGTGTGCCGGCGCCCGGGTG
GCCGGTGTGTGGTATTGTGACGGTGTCACGGGGAGGAACACCCGTAGTCAGGCCCCGGGATGTAGCCATATCGGTGAACC
TCGTTAACAAATCTCGGTGTCATGCCTCGTGTGATTGCTTGGTCCTTGGATGATCGACGGTATGCCTCGGATTTATTCTA
ACAAGTGGTATCATGAGCTAGGTTGTTCTGAGGCTGTGAATTGTTGATCTTGAGGAGAACACGTGGAAGCTGTCGATGGG
ATCTAGCGAGATGCAATGAGTATGATTGGAGACATGGCAGCGGATGTTGTCGCGTCGGTGGATCAAGGTTGCTTTTGAAG
ATTTGGGAACCACGGCGTCGTGTTTGGAAGAAGCACAAGTCTCGGCGATCTGTTTAGGGCGACGGCGGCGTAGCAGCTGG
CTCGAACGACGGTTGCAGCACGCGGTGTGGCAGCCGGCAGGAAACCCAAGCACCGCTGTGGTGGGCCATCATGGCCTTGC
GCGGTGCGGCCCTTGACGAACAGTGGCCTGGCGACGTGCACGTACTGGCGTACAGGCGCGTGGTGCAGTACGGTCAAAGC
AATTCAGTATCAGACAGTTGTTTGGTTAAAAAAAGGAGGATGTCGTTCGTTGCGGAAGGGCGTTGCTCGGTGTTGTCTTG
TCACTGGGGCATTGACTTGCTATCACATTGGATCGATCAAGTATGTTTGCTCAAGAAGAAGAGAAAAGGCTTGGAAAGTC
ACCTGTGGTGTAGCTGCTGTTGTTAGAGTTACAGGTGCAGCTACAACACAAGAAGGCTTATGTGCTTTTTCCTTTGGAGT
TCTTGACTTTGTACGTAGATCGTGTATGAAGATGGTCAGCGACGGCGTTAGTTCGGTATGATGGTCGAAGGGAAATCAAG
ACAGATGATGTGCGTACCAGGCTCGTGGAGTCTGGAGCATGTCATGCGGCCGGACAAGTTCGGCTGAGTCGGACTAGATA
GTACGACGGATCGACGTGAGTCGGTTGGTACAGAAGACGGTGCGGGGTTGGCGACGACGACGTAGGAGCGTGATGCTGAT
GGTGACCGACTTCTGGGCGTGGAAACACGTGGCGCGGGCCCCGAGGGCTTGTGTGGCTTCGACAAGACTATGACGCGGGG
TTGATTCAAGGTGGTGTATACACGGAGCTTGAAGTCGATGAGACGCGTGGGTGGACTGATCATCTACCATGAAGTCATGT
TGAAGGTGGGGATGGAGTCTAGAGGACTTCACTTGGTGCTGATTGAGGGGCTACGGCGTAAGTCGACAGAGAGTCGAAGC
CTATTCAGCGGGCAAAGCGAGTGACACGTAGTTCGGACTGGAGCCCAGTGGTCTGATGGAATCGTGAAACTCGTCATCGG
TCGGTGATGATAGGTGGTACTCTGCAGTGGGGGTTGAGTGGTGTGGGTTCGTGATCCTTGAGACTCGAGCGGGACAACGG
AGGCTCGACGCGGTAATAGCGGCGAGGCGTGCGGTATGCATGGGACATGGAGACGGGGCAGGGCTCTGGTGGTCATACAT
GTGGTGAGACAACTGCGAATTTGACTTGGGATGACTAAAAGCAACAGTGAAATTCCCTCAAGTTTCAGACAGGCGGTCAA
GAAAGGAGCGGTGATGTTGAGTTTAGGTAACTCTTATGTGTGACACCCAATGTGAGTTGTTCACTTTCTCGCAGGTCAGT
GATCAGTGTGTGATGGCGTTGGACTGATACTCTGGAACTTGGGAGCACAAACTAGAGTAACAAGGAACTTAATTTTGCTC
GAGTGTTGACTGTGGTCAAGAAAAAGAAGGGACTACAAGTTGCAGGTGGAGTCATATGGAGTCTTTGGAGTAGCAGCGGT
TCTCATGGGATAAGTTCAAGTCCAATGTACATGGAAGTTTGACGCACTGACGAATTCAAGGTGGCGAAGAATATTCGCCA
AGGTGGAGTTTGTTAGAGTTGCGTTGAATATTGCGTACAAGGTAGGTTACAGTTGGACTATGAGTTGTATTGTGTTTACA
TAGGATGTGGAGTCGTGTCCTAGTAGGACACCTGTATCCTAGGCCTCTCTTATATAGCGCGGGTAGACACACGATGTAAC
CTATGCCAACATAATAGCACAGACGCGCAAGGGGGAGCCGGCGGCGTGTGCCGGCGCCCGGGTGGCCGGTGTGCGGTATT
GTGACGGAGTCACGGGGAGGAGCCCCCGTAGTCAGGCCCGGGAATGTAGCCATATCGGTGAACCTCGTTAACAAATCTCG
ATGTCGTGCCTTGTGTGATTGCTTGGTCCTCGAATAATTGACGGTATGCCTCGGATTTATTCTAAGACATCCCATTGTCG
AATCGAGCTGAGCAAGATTCATGGCGGAAGAGCTGAGCAAGATTCATGGCGGAAGTGGGTATTCGTCTTCGTCAGCGTGC
ATATATATGGTCGGTCAATGATATTACAGTCCAGCAGGGAAGGAATAGAAGGCGTACGCGTGGATGCAGATCAGGAGTTC
TTTTTCTTAC------ACTGGACATGGAAGCTAAACTACGAGGAAAGACGAAAGAAAAATGGAGCAATTCGACCGACGAT
CCGATCTGCGAGAAGCGAGCGCAGTTCTAGCTGAGCGATCCAGTTTCCAGTGCACGTGTCATGCGCGCCACCGATTCACT
GCACCGGCCGGCAGGGTTGAAATTATGAAATCGATTCCACTCGATCGATCGCTCACTC----CCGCTACTTATTTAAACT
ACCGTGTGTACAGTGTACTATGTTGTACAGTTGTAGTACTCCTACTAGAGTGGATCACTTGGAGT-----TGGGATTACC
TTTCACGTTTCACCGATCACACCGGCGGACCGGCCATCACTCTCACCGACGATCTTGAGAAAC-GGAGATGCTGAGTAGT
AAACCATGGAGCTTTATGCTGCTCGCCGTCGTCGTCGCCGCGGCGTCGGGCTTCGTGGCGGCGGAGGCGACGGGCTGGTC
GAAAGGCTCGGCCACGTTCTACGGCGGCAGCGACGCCTCCGGCACCATGGGTAAGTTC----GCCGGGCGCCCACTGCTA
GCCTCTGTTTACTTTAGAAGTAGAACTACTAGAAGGGACCGTGAAGTGGTTAAGCAGTACGCGAAGTTCTCAATGCGTGC
ATGGATGCAGGTGGCGCGTGCGGGTACGGCAACCTGTACTGGACGGGATACGGGACGGGCACGGCGGCGCTGAGCGAGGC
GCTGTTCGGCGATGGCGCGTCGTGCGGGCAGTGCTACCGGGTGATGTGCGACCACGAGTCCGAGTCGCAATGGTGCCTGC
CGGGGAAGTCGGTGACCGTCACGGCCACCAACCTGTGCCCGCCCAACTACGCCCTCGCCGGCGGCGACGGCGGCTGGTGC
AACCCGCCGCGCGCGCACTTCGACATGGCCCAGCCCGCCTGGCTCCACATCGGCATCTACAAGGGCGGCGTCGTGCCGGT
GCTCTACCAAAGGTACGGCTC---CACCATTGGATGGGCGGTTTGACTTGGATGGATATTGGATAGATTAATCAGTGTGT
GATGTTTTATTTA-------------------------------------------------------------------
--------TGTAGGGTAGCGTGCGTGAAGCGGGGAGGGGTGCGGTTCACCATGGGAGGGTTCGAGCACTTCCAGCTGGTG
CTCATCTCGAACGTGGCCGGGACAGGGGACGTCAAGGCGGTGTGGGTGAAGGGGACGGCCACGGAGAGGATGCCGATGAG
CCGGAATTGGGGCGCCAACTGGCAGTCGCTGGCGGCGCTCGCCGGCCAGGCGCTCACCTTCGGGGTCACCGACACCGGCG
GCCAGACCGTCGTCTTCCCGAACGTCGTGCCGGCGTGGTGGAGCTTCGGCCAGGCCTTCACCTCCAGCCTTCAGTTCTCC
TACTGACTCGTCCGTCGTACATTCAGCGGTCGGACGCGAGATCGACTTCCCTGGTTTGCTTGGAGGCTCGGTTTTCATCC
TATTTGGTTCCGTCCAATAATGGTGCAGACTAGTCTGGGTCTCAGGGTGGAAATGAGGCTAGCGTAGCGTAGTCGTGTGG
TCGAATAATAATGTGAACAGAAGATTGAGAGAAGCTGGAGTGGTTTCTGAGGTGAATTTTAAAATTGTTTGCGAAATTCA
AAAATTGATCCACCAGCGGAGTAGGCCTACCGGAGGTTTCGGAATTTGC--ATTCTTGGTTTTGCCTCGTTCTGTACGAT
TGATGTCAGTGAATATTTTTTCCGTGAGATAACAGATTAAGGCAACAGACATCGACATGTAATCTCACGGAAAAATATCA
ATTTCAATAATTCTAAAAAATGATCATGAATTTGATAAAAAGTTTCAAATTTCAAAAAATGTTCACAAATTAGAAATGCT
CCAGTTTCCAAAAAATGTTTGCGAGTTTCAAAAACATTCATGGATTTTAAAAATTGTTAATGACTTTGCAATAATATTAA
CAAATTCAAAAATTTTCATGAATTCAAAAACTATTCAGGAATTTCAGTATTATTCCAAAAACTTCCAGCAATGCTCACGA
ATTCAAAGGATCCATTTTTTAAGAATTTCAAAATTGTGTCCAAAATTCAAAAAATGTTCACGAATTTCAATTTTTCCCCA
AATTTCAAAAACTGTTCCTGAATAACATTTAAAATGGTAACAAAAAAAGAATATAATAAAAGATAAAGAGAAATAAGAAA
AAGGAAAAACATAAAATAATACCAGAAAAAGAAAGAAAGTGTTCTAGGAAGGTTCTAGAACCTTCCCAAAACTCGCGTGG
AGGAAATCCTGAATGGGTCAGCCCATATAGCACAAGGGCACTCGCATGCGCCACCCATGGGTGCACGTTTGTCTCTACCC
CCTGTGGTATGCGGGGAATTGGAACAATCTATGGATCCAAGAGAACTGCTCGCTCCCCCTCGCTCAGTTT
>chr3D_63
-----------------------------------------------------------------CCTCGCACGTTGTTG
CGGGAATATCTTGTAACATATCTCAATGTGATTCATTGTATGAAACGTATATAAAAGGATAAAACTGAAACTACATATAC
TTTATTATGTTTGATCACTATATAGTTGTAAAATGTTTATTAAATATAAATAGAATAATAGAATAGAAATTTGCATGTTG
AGATAGGTCTTTTTTCATGCAGGTTTCATGATGAAGTAGCATGCTTGCATGTTGCGAGACATATGATAGTGAGTGTGGGG
CTTTTCTCGTGCATGTTGTGCGATGATGTGGCATGCTTGCATGTTGAGAGAAATAATTAGTGGGGGCTAGCTATTTAGAT
ATAGAAGATACCCCGCGCGTTGTTGCGGGAATATTTTGTAACATATCTCAATGTGATTCATTGTATGAAACATATATAAA
AGGATAAAACTGAAACTACATATAGTTTATTATGTTTGACCACTATATAGTTGTAAAATGTTTATTAAATATAAATAGAA
TAATAGAATAGAAATTTGCATGTTGAGATAGGTCTTTTTTCATGCAGGTTTCATGATGAAGTGGCATGCTTGCATGTTGC
GAGACATATGATAGTGAGTGTGGGGCTTTTCTCGTGCATGTTGTGTGATGATGTGACATGCTTGCATGTTGAGAGAAATA
GTTAGTGGGGGTTAGCTATTTAGATATAGAAGAT----------------------------------------------
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>chr4D_1259
GGC-----------------------------------------------------------------------------
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------------GGCGCGTGCGGGTATGGGAACCTGTACGGTTCTGGGTACGGAGTCAACAACGCGGCGCTGAGCACGGC
GCTGTTCAACGACGGCGCGTCGTGCGGGCAGTGCTACCTCATCACCTGCGACACCGG---CAAGTCGACGATGTGCAAGC
CCGGCACGTCCATCACCGTGACCGCCACCAACTTCTGCCCTCCCAACTGGGCTCTCGCCAGCGACAATGGCGGCTGGTGC
AACCCGCCGCGCCCCCACTTCGACATGTCCCAGCCCGCGTGGGAGACCCTCGCCATCTACCGCGCCGGCATCGTCCCCGT
CCTCTACCAG--------------------------------------------------------------CAGTAAGT
GAAGAGTGCCCACATAACTTCTTCTTCTTCCTTCCATTATCTTATAAGTGTAGTATCTAATGAGCATGTCGCCATGTCCT
GATGGTGGTGTAGGGTGAGGTGCTCGAAGATGGGAGGGATCAGGTTCACCATTGGAGGGTTCAACAACTTCGAGCTGGTG
CTGATCACCAACGTGGGCGGGCCGGGGTCGATCCGGTCGGTGTCGATCAAGGGGGAGAGGACGGACTGGATCCAGCTGAG
CCGGAACTGGGGAGCAAACTGGCAGTGCAACGCGCCGCTGGTCGGGCAGGGGATCTCCTTCTCCGTCACCTCCACGAACG
GCCAGACGCTCTACATGTACAACCTCGTGCCGGCGTGGTGGGGGTTCGGCATGACCTTCACCAGCAACCAGCAGTTC---
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----------------------------------------------------------------------
>SNPs
S---------------SSS--------------------------------S---------------S----------S-
---------S----------------------------------------------------------------------
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------S-----------------S--------------S----------------------------------------
----------------S-------------------------------------------S--S-------------S--
----------S-------------S------------------------------S------------------S-----
-----------SS-------------------------------S-------S---------SSS---------------
--------------S------SS-------------------------------S----------------S--------
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---S-------------------------SSSSSS--SS-S-SSSSSS--SSSSSSSSSS-S------------------
-------------------------------------------------------------------------------S
-----SS--SSSSSSS----S---------------------------SSS---------------SS------------
--S-------S------S---S-S------------------------S-------------S---------S----S--
---------S--------S---------------------------------------SSSS------------------
------S----------S------------------S-S-SS--S-----------------SSSSSSSS--------S-
--------------------SSSS----------------------S---------------SS-----S--S---S--S
---------------------S--------S-------S------------------S----------------------
----------------------------------------------------------SSSS---------S--------
--------------S---------S----S--S---S--S---S-------------S-SS--S----S----S------
--------------S--------------------------------------------S---------------S--S-
--------------------------------------S-------------------S-----------------S---
-S--------------------------------------------------------S---------------------
-----------------S--------------------------------------------------------------
----------------SSSSSSSS--------S---------------------S-----S-------------------
--------------------------------------------------------------------------------
-------------------S----S------S------------------------------------------------
--------------------S--S--------------------------------------------------------
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---------S----S--------------------S--------------------S-------------S---------
-----S--S--------------------------------------------------------S--------------
-------S------------------------------------------------------------------------
---------------------------------S-------------SSSS-----------------------------
S---------------------------S-----S-----------------S---------------------------
---------------------------------S-S--------------------------------------------
---------------------------------------S-------------SSS------------S----------S
------------S----------------------------------------------S--------------------
--------S--------------------------------------------------------------S---SS---
------------------------------------------S-S---S-S-----------------------------
-----------S-------S----S-------------------------S-----------------------------
-----------------S---S--S------------------S--S------------------------------S--
------------------S-------------S-------------------------S------S----
>forward_3942
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--TCACGTTTCACCGATCACGT----------------------------------------------------------
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>reverse_5942
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---------------------TCCGTATAGCACAAGGGCAC---------------------------------------
----------------------------------------------------------------------
