>input_sequence_63909
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------------------------------------------------------------------ATGGTTGTGGCGGA
GGCCGGCGACGAGATGAGCCTGTCGAACATGGTGCTGGGGTTCTACGAGGAGGCCGACCGGGAGCGGTGGCCCGAGGACG
AAACCTCCGTCGGCGACGGCGACTGCAGCGACGACGAGAGGGCCGGTGGTGGCGCCGCCGCCGAGAGCAGCGCGTTCTGG
GCGGAGCAGCTCTCGCATTTGCATGTAAGTTAATGGAGTCGC----CGCGAACTGGTTGGCGTGTGTCGGTGTGTGCATG
GCTTTTTGTTATTGCATCATCGGGCGGCATGTAAATTAATCTCGCCGTGACGAATGCGTACGTGCAGGAGGTACTGGGCA
AGACGAGCGCGGCGGAGAGCCGGATCCGGGCGGACACGGAGGAGGCCGTGAGGCAGGCGCGCT------CCGCCACCGCG
GCAGCAGGCGTCTGCTCT---TGCGCGACCCGCGCGACGGCCGGCGGCGGGTGCCGGGGCTGCACGCTCCGGTCGGTCGC
GGGGCGGCTGCGCGACGCCGGGTACGACAGCGCCGTGTGCCGGTCCAGGTGGGCGCGCTCGCCGGAGTTCCCCGCGGGGG
AGCACAGCTACGTGGACGTAGTGGTGCCGACGAGGAGCGGCAGGGCGATGCGGGTGGTGGTGGAGCCCAGCTTCCGGGCC
GAGTTCGCCATGGCGCGCGGCGGCGCCGGGTACGGCGCGCTGGTGGCGGCGCTGCCGGAGGCGTTCGTGGGCAGGGCGGA
GAAGCCGCGGGCCGTGGTCGGGGCCATGTGCGCCGCCGCGAAGCGGTGCGCGCGCGAGAGCAGCCTGCACATGGCGCCCT
GGAGGAAGCGCCGGTACATGGAGGCCAAGTGGCTCGGCACGCCGGACCGCCTCTCGCCGGC------CGCGGGCGCCGGT
TCCCCCGTGGCGGCCGGCTCCCCGGAGAGCGAGAAGCAGCGCAGGTTCAGGGCCTCCATGCTGACGCTCGACTACGGCGG
CCGGACCGCCGTGGAGGTCGCGTGA-------------------------------------------------------
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>chr1B_1_TraesCS1B01G352000
CTTATAAAATGAAAAAAACTTAAATTTTAAGATAAGCCCTATAAACCGAAAAGGAGGGAGTATGTGTGAGAATTTGAGAA
GAAATTGTACTCACTTGTTTGGTTGGTGGGAATTGACATGGGACTAGATAAGGGAAGTTAGGATAAAGGGTTAATATTAA
CCTACTAAAACAATCCCTTCCAACTCCCACCCTCTCCCCTGTTAATAAAAACGATGGAAGTTGGAGTCTCAAGTCTCATG
TCTATTCCCTTATGAGTTTCCAATTCCTTCAACCAAACAATAGATTTGAAGCCTCGTACACCTTCAATTCCCATTCCCTA
GCTCTAATTACCCCCAACTAAACATGTTGTGTCCCTGTAATCAATCATTGGACTTTTAATCTCCTTACCCCTCAACTCTC
ATTCCCCATGCGAACCAACATGTGGTTAGATGGTTAGAGGGATTGTGATATGCCCAGCCCATCAGGGTTTAAGTCCTGAT
GCTCGCATTTATTCCTGAATTTATTTCAGGATTTCCGGCAATGCGCATTCAGTGGGAGGAGACGTTCCCGTCGACGACGA
GGTGCCTACTTTCAAGATGATATGCCAGAGTGAGTGTATGCGCGTGTATATGAGCGCTTGCGTCCGTACCGTTTTAGGAA
AAACTTCCATTCCCTATCTCTAATTACCACGAAACAAACACGCTCTATGTACTTTGCTCTTTGCAAAATCTCATCATTTG
CTACTCCATGTAACAAAATCTTCCGCGCTCC-------------------------------------------------
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-----------------------------------------------TCCGCAGAGGATCAAGGCCATCAACCGACGTGT
GATCGTGCTGTTCAATTATCCCTACCGACCGGGGGGCCCACGCCATCTGGAACTGCCTCATCCACTCCGCGCGGGTCCC-
--GCGAGCACCGTACCATCCATTGCCGCCTCGCCACGTCCGCCGCGTCTCCGGGTATACAAGCCGGCGGGAAGGACCCTG
CAGCTGAC--CACGGAGCAACGTGAGCCACGCACACCAGATTTACAACCAAGCACG-----AGGAAATGGTTGTGGCGGA
GGCCGGCGACGAGATGAGCCTGTCGAACATGGTGCTGGGGTTCTACGAGGAGGCCGACCGGGAGCGGTGGCCCGAGGACG
AAACCTCCGTCGGCGACGGCGACTGCAGCGACGACGAGAGGGCCGGTGGTGGCGCCGCCGCCGAGAGCAGCGCGTTCTGG
GCGGAGCAGCTCTCGCATTTGCATGTAAGTTAATGGAGTCGC----CGCGAACTGGTTGGCGTGTGTCGGTGTGTGCATG
GCTTTTTGTTATTGCATCATCGGGCGGCATGTAAATTAATCTCGCCGTGACGAATGCGTACGTGCAGGAGGTACTGGGCA
AGACGAGCGCGGCGGAGAGCCGGATCCGGGCGGACACGGAGGAGGCCGTGAGGCAGGCGCGCT------CCGCCACCGCG
GCAGCAGGCGTCTGCTCT---TGCGCGACCCGCGCGACGGCCGGCGGCGGGTGCCGGGGCTGCACGCTCCGGTCGGTCGC
GGGGCGGCTGCGCGACGCCGGGTACGACAGCGCCGTGTGCCGGTCCAGGTGGGCGCGCTCGCCGGAGTTCCCCGCGGGGG
AGCACAGCTACGTGGACGTAGTGGTGCCGACGAGGAGCGGCAGGGCGATGCGGGTGGTGGTGGAGCCCAGCTTCCGGGCC
GAGTTCGCCATGGCGCGCGGCGGCGCCGGGTACGGCGCGCTGGTGGCGGCGCTGCCGGAGGCGTTCGTGGGCAGGGCGGA
GAAGCCGCGGGCCGTGGTCGGGGCCATGTGCGCCGCCGCGAAGCGGTGCGCGCGCGAGAGCAGCCTGCACATGGCGCCCT
GGAGGAAGCGCCGGTACATGGAGGCCAAGTGGCTCGGCACGCCGGACCGCCTCTCGCCGGC------CGCGGGCGCCGGT
TCCCCCGTGGCGGCCGGCTCCCCGGAGAGCGAGAAGCAGCGCAGGTTCAGGGCCTCCATGCTGACGCTCGACTACGGCGG
CCGGACCGCCGTGGAGGTCGCGTGAGCGATCGAT------CGCACCTGGAGATGGCTGCAACCTGTGGAACTGCCGGCCT
ACGAAATTAC----CACGGTCCACGG-ATACAAACATATATACTGTACCTATGAATTGAATTCTCGTGTAGGAACGACTA
TTATTTGGCTCCAAGC--------CATGAGCTACCTCAGCAGCGACATTGATCGTTTAGATTAGGTACTACTCCCTCCGT
TCCTAAATACTAAGTCTTTTTTAAAATTCCGAATATAAACTACATATGAAGCAAAACGAGTGAATCTACACTCTAAAATA
TATCTATATACATTCATATGTAGTACTAGTTTATATTAAAATCTTTAGAAGCATTTATATTAAGAAACGGATGGAGTACT
AGTAAGCAAATCACTAGGAG--------CCTTTGCTTGCTCCCTCGGTGATCAAAACCGCCAAGGATGCAGGTGCTTGTT
CATTTAGACGGGTCTGATCACCGCGTCGAGCTTCTCAATTCCCTTCGCTGATCTTCCGATCGATGCTGCTGGCGGGCGCG
GTTCATGACGCGCTTGGGGCAGGGCCGTTGGCCTCAATGATCTTTGCTCCGGTGAACGAACCCACCCAGCTGCGTCCATG
GCAGTCTCTTACGCAGCGAT------CGGCCGAGGTGATCAATCAACGATAAATGGCATAAAATATGACACGAACACATG
ACAACTCTGAGGCTGTGTTTGATAGCAAAGTATTATATAAATCAAAGTATCAAAAACTACAGTAATTTTGCCTGTAGGTG
TAAGATACCATAGTTTTATCAAAACAGAGTATTTTGAAGTATTCACAATACATAGAACCTGTTTGGCTGTTGCCGCATAA
CACTGTAAATTTTGCTGTTTAGCCGTTGCCTTTAAGCACTTAGCAGCTCTGTTTTTCAAAAAGAGGTTTGGGGTTCTTTT
TTTTATGCATTGAAAAAACTGCAGCTTGCCCAATACTACAGTATTAAAAGTACAGTTGTTAGGGGCAACCAAACAGCTCA
TTGTAAATAAAACTATGG
>chr1D_696
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-------------------------------------------------------GCTCTTTGCAAAATCTCAT---TTG
CTACTCAATGTAACAAAATCTCA---------------------------------------------------------
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---------------------------------------TTTGTTCGTCCGCAGAGGATCAAGGCCATCAACCGACGTGT
GATCGTGCTGTTCAATTATCCCTACCGACCGGGGC-CCTACGCCATCTGGAACTGCCTCATCCACTCCGCGCGGGTCCC-
--GCGAGCACCGTACCATCCATTGCCGCCTCGCCACGTCCCCCGCGCCTCCGGGTATATAAACCGGCGGGAAGGAGCCTG
CAGCTGAC--CACGGAGCAACGTGAGCCACGCACACCAGATTTACAACTAATCAGAAGAGACGGAAATGGTTGTGGCGGA
GGCCGGCGACGAGATGAGCCTGTCGAACATGGTGCTGGGGTTCTACGAGGAGGCCGAGCGGGAGCGGTGGCCCGAGGACG
AAGCCACCGTCGGCGACGGCGACTGCAGCGACGACGAGAGGGCCAGCGGTGGCGCCGCCACCGAGAGCAGCGCGTTCTGG
GCGGAGCAGCTCTCGCATTTGCATGTAAGTTAATGGAGCCGC----CGTGAACTGGTTGGCGTGTTGTTGTTCCGTTGTT
GGGCGCG------------------GGCATGTAAATTGATCTCGCCGTGACAAATGCGTACGTGCAGGAGGTGCTGGGCA
AGACGAGCGCGGCGGAGAGCCGGATCCGGGCGGACACGGAGGAGGCCCTCGGGCAGGCGCGCTCCG---CCGCCACCGCG
GCAGCCGGCGTCTGCTCCTCCTGCGCGACCCGCGCGACGGCCGGCGGCGGGTGCCGGGGCTGCACGCTCCGGTCCGTCGC
GGGGCGGCTGCGCGACGCCGGGTACGACAGCGCCGTGTGCCGGTCCAGGTGGGCGCGATCGGCGGAGTTCCCCGCGGGGG
AGCACAGCTACGTGGACGTGGTGGTGCCGACGAGGAGCGGCAGGGCGGTGCGGGTGGTGGTGGAGCCCAGCTTCCGGGCC
GAGTTCGCCATGGCGCGCGGCGGCGCCGGGTACGGCGCGCTGGTGGCCGCGCTCCCGGAGGCGTTCGTGGGCAGGGCGGA
GAAGCTGCGGGCCGTGGTCGGGGCCATGTGCGCCGCCGCGAAGCGGTGCGCGCGGGAGAGCAGCCTGCACATGGCGCCCT
GGAGGAAGCGCCGGTACATGGAGGCCAAGTGGCTCGGCACGCCAGACCGCCTCTTGGCAACCACCGGCGCCGGCGCGGGT
GCCCCCGTGGCGGCCGGGTCCCCGGAGAGCGAGAAGCAGCGCAGGTTCAGGGCCTCCATGCTGACGCTCGACTTCGGCGG
CCGGACCGCCGTGGAGGTCGCGTGAGCGATCGATCACACTCACACCTGGAGATGGCTGCAACCTGTG-AACTGCCGGCCG
ACGAAATTACTTACCACGGTCCACAA-ATACAAACATATA-----TACCTATGAATTGAATTCTCAG-------------
-TATTTGGCTCCAAGCGCGTACGTCATGAGCTGCCCCGGCAGCGACATCGATCGATTAGATTAGCTG-------------
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-GTAAGCAAATCACTAGGAGGCTAGGAGCCTTTGCTTGCTCCCTCGGTGATCAAAACCGCCAAGGATGCAGGTGCTGCTT
CATTTACCGA----------------------------------------------------------------------
---------GCGCTTCGGGTAGGGGCGTTGGCCTCGATGATCTTTGCTCCGGTGAACGAACCCACCCAGCTGCGTCCTTG
GCAGTCTCTTACGCAGCGATCGACCACGGCCGAGGTGATCAATCGATGATAAATGGCTCACG-TGTGGCACCAACACATG
GCAAAGCTGA----------------------------------------------------------------------
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>chr1A_698
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---------------------------------------------------------TCTTTGCAAAATCTCAT---TTG
CTACTCCATGTAACAAAATCTTCCGCGCTCCTCCGCCAACAATGCTACACGTACGAAGGATTACGGGGTGTTACGGGGGC
TGATTCAACGTGGCCGTTAATGATTGGGGTTAGTTGTGGAAGCGGGCCCACCCCATGAAAATCAAGGGGGGGGGGGTGAA
CGTCAATAATTCTACACCTACGAAACCTTCTCCGTAAGCTTACTTAACCTTCCATAAAATTCTCTTCTCCCCCCCTGATT
TTAACCGGGGTGGGCCTCAGCTGCTAATCTTGGCCCAATTAACAAACCCCACATCAACTTTTACGTAGAATCTGAATGTA
ACATTACTAGGGCTACAAGAAAAGCTCGAGGATCACGACCCGCTCGAGATCGACTCTTTTTTTGGCTCGGCTTGAGATCG
ACTCGAAAAGAAACGAGCTGAGTATGAACATTTTTTGTAGCTCGGTCAAGAAATGAGCCAATCTTGAGCCAATACTGGCT
CGCTCGATTTTAGCTCGATAGCTCGGCATAATATTATTATGTTAGATGAGCATGCTAGATATTAAATGAAAATAGGATAA
TTTATGCCATATATGTCATTCAGGATTTTTCTTTGTTTATTTGCAAGCAAGCATGGAAGCTTAATTAATTGCTGAGAAAA
TTTCTACCTTCGTATGGTAAGTGGTCGGCCGTGCGTTAACTATTCTGTTGTTTCCCAGCATATGCACCTTTGTTTTTTGT
TTTCTTTCATCCATGAAGACCACCATCTGTTGGTCCAAGAAAAGATGAGCTCTCCCGACTATGAAGCGATGGTGGTACCT
TCAATTGAAGACCACCATCTGCTTCGTTTTCTCAATTATATACTCCGCGGTGGTGGTCCCAATGATGGGAGTATATTTTG
CGAATCATTATCTTATGTCGATTCTAGACATTCAGTCATGAGAGAATAAGTCAAATTACATCTAAGAAATTTAAATTATC
ATCATTTTGATGGAATAATATTTTTAGTGCTTTTTTTATGTGGTGTTGTGCTTTATCTAGCTGGAATAATAGTCATAGAT
TTATATTTTTATCCTCTCATTTAGCTCGAAACTAGCTCGAGATCAACTCGAAATTGTTACAAGCTAAGCATGAGTCATGT
TCTACAGCTCGACCTTGAGCTTCACTTAGTTTGAGCTCGCTCGAATTTTAATATGAGTTGAGCTGAGCCATGTGCAACTC
GCTCGAACTCGACTTGTTTGCAGCCCTAAACATTGCGTATGTGTAGCATTGCTCGGTGAACGTTTAGTAAATTGGAAGGA
GTCTGTAAAGCCCCGTAACTGTTCGTGCATCTAGCATTTTTTGCTCCTCCGCAGAGGATCAAGGCCATGAACCGACGTGT
GATCGTGCTGTTCAATTATCCCTAGCGACCGGGGC-CCCACGCCATCTGGAACTGCCTCATCCACTCCGCGCGGGTCCCG
CCGCGAGCACCGTACCATCCACTGCCGCCTCGCCACGTCCGCCGCGTCTCCGGGTATATAAGCCGGCGGGAAGGAGCCCG
CAGCTGACCACACGGAGCAACGTGAGCCACGCACACCAGATTTACAACCAAGCACGAGAGAAGGAAATGGTTGTGGCGGA
GGCCGGCGACGAGATGAGCCTGTCGAACATGGTGCTGGGGTTCTACGAGGAGGCCGACCGGGAGCGGCGGCCCGAGGACG
AAACCACCGTCGGCGACGGCGGCTGCAGCGACGACGAGAGGGCCGGCGGCGGCGCCGCCGCCGAGAGCAGCGCGTTCTGG
GCGGAGCAGCTCTCCCATTTGCATGTAAGTTAATGGAGTCGATCGTCGTGAACTGGTTGGCGTGTGT--------GCTTG
GCTGTTTGTCATCGCATCATCGGGCGGCATGTAAATTAATCTCGCCGTCACGAATGCGTACACGCAGGAGGTGCTGGGCA
AGATGAGCTCGGCGGAGAGCCGGATCCGGGCGGACACGGAGGAGGCCGTCAGGCATGCGCGGTCCGGCACCGCCACCGCG
GCAGCTGGCGTCTGCTCCTCCTGCGCGACCCGCGCGACGGCCGGCGGTGGGTGCCGGGGCTGCACGCTCCGGTCCGTCGC
GGCGCGGCTGCGCGACGCCGGGTACGACAGCGCCGTGTGCCGGTCCAGGTGGGCGCGCTCGGCGGAGTTCCCCGCGGGGG
AGCACAGCTACGTGGACGTGGTGGTGCCGACGAGGAGCGGCAGGGCGGTGCGGGTGGTGGTGGAGCCCAGCTTCCGGGCC
GAGTTCGCCATGGCGCGCGGCGGCGCCGGGTACGGCGCGCTGGTGGCCGCGCTCCCGGAGGCGTTCGTGGGCAGGGCGGA
GAAGCTGCGCGCCGTGGTCGCGGCCATGTGCGCCGCCGCGAAGCGGTGCGCGCGGGAGAGCAGCCTGCACATGGCGCCCT
GGAGGAAGCGCCGGTACATGGAGGCCAAGTGGCTCGGCACGCCGGACCGCCTCTTGGCAACCACCGGCGCCGGCGCGGGT
GCCCCCGTGGCGGCCGGGTCCCCGGAGAGCGAGAAGCAGCGCAGGTTCAGGGCCTCCATGCTGACGCTCGACTTCGGCGG
CCGGACCGCCGTGGAGGTCGCGTGAGCGATCGATCACACTCGCACCTGGAGATGGCTGCAACCTGTG-AACTGCCGGCCT
GCGAAATTAC----CACGAATACATACATACATACATACA-----TACCTATGAATTGAATTCTCGTGTGGGAATACACT
G-------------------------------------------------------------------------------
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------------------------------TTTGCTTGCTCCCTCGGTGATCAAAACCGCCAAGGATGCAGCTGCTCCTT
CATTTACCGA----------------------------------------------------------------------
---------GCGCTTCGGGTAGGGGCGTTGGCCTCAATGATCTTTGCTCCGGTGAACCAACCCACCCAGCTA--------
----TCTCTTACGCAGCGATCGACCACAGCCGAGGTGATCAATCGATGATAAATGCCACACG-TGTGGCACGAACACATG
GCAACTCT------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------SSS---
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----------------------------------SS--------------------------------------------
----------------------------------------------------------S----------------S----
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-----S----------------------------------------S---------------------------------
------------------------------------------------S------------------SS--SSSS--S--
---S-----S--S-----------------------------------------------------------S-------
-------------------------------------------------S------------------------------
-----S-----------S--------------------------------------------------------S-----
-------------------------------------------------------------S------------------
-------------------S---------------------------S--------------------------------
-----------------------------------------------S-----S--------------------------
-----S------------------------------------------------S-------------------------
------------------------------------------------------S-S-SS----------S-----S---
S----------------S-------------------------------------------------------S------
-------------------------------------------------------------------S------------
------------------------SS--------------SSSSS------------------------S----SSSSSS
S-------------------------------S--S-S----------S-----S---------S-SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S---------------------------------------------------------------------------SS--
------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS------S---S----S----------------------------------------------------S--
--------------------------------------------S-S-----------S-SSS-S--S------------
S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS
>forward_418
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------------------------------------------------------------------------------TC
ATTCCCCATGCGAACCAA--------------------------------------------------------------
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>reverse_3476
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-----------------------------------TCAGCAGCGACATTGATCGT-------------------------
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