>input_sequence_63893
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------AT--GAATCCAGGTCTTGCTGATGAAGTAGCGACGG---------AGATCGG
CGCCGAGAAGAGGAGGCCGTGGAAGTGCTGCGACAGCCCGTTGTGCAGCAGGTCGATCCCGCCGCGGTGCCGCTGCATGG
ACGCCGTCGAGCACTGCGACGAGGCCTGCACCCGCTGCGAGGCGTCCCAGTCCGACTCTTCCAAGCACGTCTGCAACGAC
CGGTACCACGGCTGGCCCGGGCCCAACTGCACCGACCCCGACG------ACATCCCAAGCGGTACGTACTGATGCTAACC
AAACTACTCGA------------------AGCAGCTCGCTAGGTATCTCTACTAGTG----------------TCCATGT
AACGGTGTGC-----GTGCAGGTCCAGGGGTCTCTGGTCCGCCGGTTGTCAGTCAAGCGACGGAGGCGGGGGAGGAGACC
AGCGTC--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------GTCGGCGGCGAGGAGAAGCCGAGGCCGTGGAAGTGCTGCGACGAGGCCATATG
CACCATGTCGTTCCCGCCGATCTGCTTCTGCCGCGACAGGGTGAAGAAGTGCGCCAAGACCTGCAACAAGTGCGACAAGG
ACGAGTCCGACGCTTCCCGCCACGTGTGCGGCGACTCCTACTTCGGCTGGCCCGGGCCCAGGTGCACCAACCCT---GAC
GACGGCCACGTCCCAAGTGGTACTGGTACCAGACTCGAAGCACCTGTCTAGGAATTTCTACTTGTATGTGGTGC------
AATGTTTATATAG----TGAGTCTGTGCAGGTCCAGGAGTTTCTGGTCCGCCGGTCGTCGGTCAG---------------
---------------------------------GAAGCAGCTGTTAGCGAGGAGAT---CGCCGTCGACGGC---GAGAA
GCCGAGGCCATGGAAGTGCTGCGACCAGACCCTGTGCACCAGGTCTGCCCCGCCGACCTGTTTCTGCCACGACAAGGTGA
AGAAGTGCGCCAAGACTTGCAAGAACTGCCTCAAGGACGAGTCGGGCACTTCCCTCCGCGTGTGTGGCGACCCTTACTTC
GGCTGGCCCGGGGCCAAGTGCCACAAGATCTAA-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------
>chr3D_1_TraesCS3D01G035700
CTGTTTTCGTGATAAATTCCCCCTTTCTCAACCCTTTTCTTTACCATCCCGCCGCTTTGCACCGTCTCGGGGGTAAGGCG
TGCCCGTGCACCTTGCACTTGTAGGAGTATATATTGCATAAAATCAGCCGCCCAGTATATTGCATAAACACTCGCATCAC
TCAGGAG---------------GTGAATGCAACTTGAGCAGCCAAGCTAGCTCAACATGCTAGATCCAGAAAGTACCGTG
GTAACCCACCTGACCCCTTGCAATTTAGAGCGGACGGCTGTGATTGCACGTAGTGATTAAGTTGCAGTACCCGGTTGTAC
ATCTACTAATTGGA-CCCGATGACTACTAAAATGCGTCTTATTATCCAGTATCC--------------------------
-------------------------AAGCTAGTTGTAGTATGCGAATCTAGCGTCATTCCGAGTGGATTATGGAATCTAT
TGAGCTCGCCGGTGACCAGATCCGGT-TTTGCCGCATGTCTACCCTAAGCCACTTTCTAATTTTAGGTTAACCAAAGCCT
AGTTACAAGTGATCTGTGATA----------AAGCATCGCAATATGCATCAGTTTAAATATTATGCAAGCATCCATACAT
GCACGCACGCATGCATCGACTCAAAAGTAGTCCACCACGTATGCTTG---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AT
TATGCGTGCACGACATGTGATACCATGACTCAA-TGCGTGCACCGTGTCGGGGGCATCTGGGTATGTACATAAAATAACT
G------------------AACATCCTGCAGCCCCATCCAGCAACGGCAAGATCGTCATATAAATCTTGC--GCGCGCGC
GACTATAAATACGGACCGGCGCCCGTAAGTTTTATCCACCAAAAGCCAGCTGATCGACC------TGCAGCCATGAGGAG
ATGCATTGCTGCCGTCCTGCTGGTGCTTTCACTCGAGGCCCTCGCAGCCGGGCGCCTCTCCGCTGCCGTCGCCGACGACC
GTGTGGACACCATTACATGAATCCATATAATGTTGGAAGAGCAAA-----------------------------------
----------TGTTGGAAGAGCAAATGTTTTTGCTAGCTGCATGTGATAATCACCCAATA--------------------
---------------------------CAT--GAATCCAGGTCTTGCTGATGAAGTAGCGACGG---------AGATCGG
CGCCGAGAAGAGGAGGCCGTGGAAGTGCTGCGACAGCCCGTTGTGCAGCAGGTCGATCCCGCCGCGGTGCCGCTGCATGG
ACGCCGTCGAGCACTGCGACGAGGCCTGCACCCGCTGCGAGGCGTCCCAGTCCGACTCTTCCAAGCACGTCTGCAACGAC
CGGTACCACGGCTGGCCCGGGCCCAACTGCACCGACCCCGACG------ACATCCCAAGCGGTACGTACTGATGCTAACC
AAACTACTCGA------------------AGCAGCTCGCTAGGTATCTCTACTAGTG----------------TCCATGT
AACGGTGTGC-----GTGCAGGTCCAGGGGTCTCTGGTCCGCCGGTTGTCAGTCAAGCGACGGAGGCGGGGGAGGAGACC
AGCGTC--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------GTCGGCGGCGAGGAGAAGCCGAGGCCGTGGAAGTGCTGCGACGAGGCCATATG
CACCATGTCGTTCCCGCCGATCTGCTTCTGCCGCGACAGGGTGAAGAAGTGCGCCAAGACCTGCAACAAGTGCGACAAGG
ACGAGTCCGACGCTTCCCGCCACGTGTGCGGCGACTCCTACTTCGGCTGGCCCGGGCCCAGGTGCACCAACCCT---GAC
GACGGCCACGTCCCAAGTGGTACTGGTACCAGACTCGAAGCACCTGTCTAGGAATTTCTACTTGTATGTGGTGC------
AATGTTTATATAG----TGAGTCTGTGCAGGTCCAGGAGTTTCTGGTCCGCCGGTCGTCGGTCAG---------------
---------------------------------GAAGCAGCTGTTAGCGAGGAGAT---CGCCGTCGACGGC---GAGAA
GCCGAGGCCATGGAAGTGCTGCGACCAGACCCTGTGCACCAGGTCTGCCCCGCCGACCTGTTTCTGCCACGACAAGGTGA
AGAAGTGCGCCAAGACTTGCAAGAACTGCCTCAAGGACGAGTCGGGCACTTCCCTCCGCGTGTGTGGCGACCCTTACTTC
GGCTGGCCCGGGGCCAAGTGCCACAAGATCTAACCTGGCGGCCCACGTCCGCCGCGATGACTAGCTAGCTAGGATGTCCA
TGCACGCTCAGCTCTAT-------------CCTTGCACCGGGTGATGGTGAA-CGAATAAAGTGAGT----CGGCCGGCC
GGCCGGTCAGTGACCTTGTGTACCGAGCCACGGAGTTCTGTATCGCACTGTAGTAGGTGCGCACTTACGTGTTGTTTTCT
TCCGGGTTGTCGTTGTTGTAGCGCTGGTAGTGTTTGGTTGCATGGTCTCAGCATCGATGATTATGATAAGTTGTGTTAAT
CAGACAATCATGCCATCTTTGTTGATGCTGGACACTTCGAGTTTGAGGTGGTCA-------------CTACCTCTTTACT
GTACCAAAATATAATATGATTTTACAGTG-AAAAACATCTTATATTTTGATACAGAGGAGTA--------GGTTGGTTTC
GTGGGCATGCATGCATGACTGATTGATGTTGGAGATGCACTTAGCTAAACAAGTGTTTACAGTGCCTTCGTAGT-AGTTT
TTGCGCGCCGCAGAGCGCCGGCTCCAGCGGCCGTTGCAAAATATAGCATGCGCGAGCCGCTCTAGAAGATGCGCTATATT
T-------------CTTCTCCTTCTACTCTGATTCGA-------------------------------GGCATAGATAGA
TAAAACGATAGATAGATAGTACATAGATAGATAAACGATAGATAAAAGGATACATAGATAGTTCATAGCCTCCTCCTACG
ATTGATTATAAAAACAATAGAT-AAAA----------AACTACTCCTCGTCGTCCTCCTTCTCCTCCTCCGACTCCG---
------TCTCGGTGATGTCCTCCTCCAACGTCTAAAATTAAAGCGTCAAGGTACCGATCGTCGTTGGAGTCCCAGGATGA
CGCTGCTCCTAGGTTGATGTTGAATTGAGCGGCCTCCTTCGGCAAACGCCTATCATCGCGGTAGATGGCTCGCTCCGCCC
TCCTCTCC---------GCCCTCCTTTGGGCGTAGAACTGGCGCTCCTTGATGACGTCCTATGGGAAGCATTTGAGCCAC
AACGCCTTGGCTTCCTCATCCATCTCG
>chr3B_1
CTGTTTTTGTGATACATTCCCCCTTCCTCAACTCTGTTCTCTACCATTCGGCTGCTTTGGATCGTCTTGGGAGTAAGGCG
TG-CCGGGCACCTTGTATTTGCATGAGTATAT--TGCATAAAGTCAGCCGTCCAGTATATTGCATAAACACTCGCATCAA
TCGGGAGATCCCGGCCGGACTAGTGAATGTCACTTCAGCAGCCAAACTAGCTCA-CATGCTAGATCCAGAAAGTACCGTA
GTAACCCACCTGACCCCATGCAATTTAGAACGGATAACTGCGATTGCACGAAGTGATTAAGTTGCAGTACCCAGTTGTAC
ATCTACTAATTGAATCCAGTTTACTACTAAAATGCGTTTTGTTGTGTACTACCTTCGTTTCGAAATATATGACGTTTTGG
TAGGCTAACGGAGCTAGCAGTGTGGAAGCTAGTTGTAGTATGCGAATCTAACATTAGTCCAAGTAGATTACGGG----AT
CGAGCTCGCCGGTGACCAGATGCACT-TTTGCCGCCGGTCCAGCCTAAGCCACTTGCTAATTTTAGGCTAACTAAAGCCT
AGTTACAAGTGATATGTGATAGATTAATCGGAAGTATCGCATTATGCATCAGCTAAATTATGCAGGCAT-----------
----GCATACATGCATCGAGTCAAAAGTAGTCCACCACGTATGCTTAATTGTGCGTGCACACATGTGATACCATGGCTCA
CAATGCGTGCACCATGTCCGGCGTTATGGCAAGCATACATGCAAGACAGACCGTCATCTATTTACGCGTGCAGGCCACGT
GCTGGTTGCATGCCCCCAACGCGTGCACGCGGAATTGTCCCTTGCACGCGTGTGCACCGTTTTGAGGATAACGCAAGTGC
TGAAGCCATACGCGTGGCAGTGCACCATGCACTTTTCACTGTTCATCACTGTAGAATTGTAGACGGGTGCTCCAACCTAG
CTAAGCAAGTGCGAACATCAGTCCGAGTTGATTATGGAGCAGAGCTCGCCGGGGACGAGATCCACTTTTGCCGCCGGTCG
ACCCTGAGCCACTTGCTAAATTAGGGTTAATATATACTAAAGCCTAGTTACAAGTGAGCTCCGATAGATTCGAAAAGTAT
AGCAAATACTGTAATTCATCAGTTTAATTATATGCATGTATGCATCGGGTCAAAAGCTGTCCGCCACGTACGTGCTTCAT
TATGCGTGCATGACACGTGATGCCATGACCCAAATGCGTGCACCCTGTC----------GGGAGTATATGCAATAAGATA
TTTGAACAACAGGACCTCAAACATCCAGCAGCCAGATCCAGCAATGGCAAGAGCATCCATGTTCTAAACCTAGCTAGAGC
GGCTATAAATACGGACCGGCGCCCCTAAGTTTCATTCACCAA-AGCTAGCTGACCGATCTGCCTGTGCAGCCATGAAGAG
ATGCATTGCTGCCGTTCTGCTGGTGCTTTCACTCGAGGCCCTCGCCGCCGGGCGCCTCTCGGCTACCGTCGCCGACGACC
ATGTGGACACCATTCGTCTCCCGAGCAACGGTAACTGTCACGCCATTCGACTAGATACACTATATGTCCATTGTTTGTCT
GCCATAATAGTGAAGGGAGAGCAA-TGCTTTTGCTGCA------------------------------------------
-------AGTGACGAACGCGATACGTGCAT--GAATCCAGGTCTTGCCGATGAAGTAGCGACGGCGGCTACGGAGATCGG
CGCCGAGAAGACGAGGCCGTGGAAGTGCTGCGACCGCCCGTTGTGCAGCAGGTCCATCCCGCCGCGGTGCCGCTGCATGG
ACGCGGTGGAGCAGTGCGACGAGGCCTGCACCCGCTGCGAAGCGTCCCAGTCCGACCCTTCCAAGCGCATCTGCAACGAC
CGGTACCACGGCTGGCCCGGGCCCAGCTGCACCAACCCCGACGCCGACGACATCCCAAGTGGTACTGGTACCACGCATCC
TCGAAGA---------------------------CTAGCTAGGCATCTGTATGTGCTAGTAAT-------------ATCT
CACGGTG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------TGCGCGCGTGCAGGTCCGGGAGTTTCTGGTCCGCCGGTCG-----------------------
----------------CGGTGGCAGCGGAGGAAGAAGAAGTTGTTAGCGAGGAGAG---CGCCGTCGTCGGCAAGGAGAA
GCCGAGGCCATGGAAGTGCTGCGACGACACCCTGTGCACCAGGTCTGCCCCGCCGACCTGCGCCTGCAACGACAAGGTGA
AGAAGTGCGCCAAGACCTGTAAGAAGTGCGAGAAGGACGAGTCGGACGCTTCCCGCTTCGTGTGCCGCGACCGCTACTTC
GGCTGGCCCGGGCCCAAGTGCACCGAGATCTAGCCTCACCGCGGTTT-----------------CTAGCTAGGATGTGCA
TGAACGCCGAGCTCTACATGCGGCATGCAGCCTTGCACTGGGTGATGGTGAATCGAATAAAGTGAGT----CGTCCGGCC
GGTCAGTGGCCTGGTATGTGTACCGAGTCACGGAGTCTTGTAT-GCACTGGAGTAGCTGCGTACCTATGTGTTGTCCTCG
TCGTCGTTGTTCTTTTACCACT-----TAGTACTTAGTTGCATGGTGTTACTATC-ATGAATAAGATAAGATGTGT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------
>chr3A_323
GATGCT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------CTAAAATGCGTCTTATTATCCAGTT-----------------------------
----------------------TGGAAGCTAGTTGTAGTATGAGAATCTAGCATCATTCCAAGTGGACTATGGAATCTAT
CGAGCTCGCCGGTGACCAGTCCGCGTGTTTGCCGCCTGTCGACCCTAAGCCACCTGCTAATTTTAGGTTAACTAAAGCCT
AGTTACAAGTGATCTCTGATAGATTAGTCAGAAGCATCGCAATATGCATCAGTTTAATTATTATGCAAGCA---------
---CGCATGCATGCATCGAGTCAAAAGTAGTCCACAACGTATGC------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TTCGT
TATTCGTGCACGACATGTGATACCATGACTCAA-TGCGTGCACGGTGCCGGGGGTCCCTGGGTATATGTACATTAAGATA
ACTGAACCCAGCAGCCCGTTGCAGAAAT-----------AGCAACGGCAAGATCGATCTTCATCTAAACCTAGCGCGCGC
GGCTATAAATACGGACCGGCACCGCTAAGTTTCATTCACTAGGAGCTAGCTAATCGACC------TGCAGCCATGAAGAG
AACCATTGCTGCCGTCCTGCTAGTGCTTTCCCTCGGGGCCCTCGTCGC---------------TGCCATCGCCGACGACC
ATGTAGACACCATTCGTCTTCCGAGCAACGGTAACTGTCACGCTATTTGATTAGATAAACTATATGTACATTGTTTTACT
GCCAGAATTGTGAAGAGAGAGCAAGTGCTTTTGCTAGCTACTCCCTCCGTAAAGAAATATGTGAGGGTCTAGATCACTAA
TTAAAGTAGTGATGAACGTGATATATATGTACGAATCCAGGTCTTGCTGATGAAGTAGCGACGGCGGCTACG--------
----GAGAAGAAGAGGCCGTGGAAGTGCTGCGACAGCCCGTTGTGCAGCAGGTCCATCCCGCCGCGGTGCCGCTGCATGG
ACGCGGTGGAGCAGTGCGACGAGGCCTGCACCCGGTGCGAGGCGTCCCAGTCCGACCCTTCCAAGCGGATGTGCAACGAC
CGGTACCATGGCTGGCCCGGGCCAAACTGCACCGAGCCCGACGCCGACGACATCCCAAGTGGTACTGGTACCACGCATCC
TCGAAGA---------------------------CTT----GGCATCTCCATGTACTAGTAAT-------------ATCT
AACGGTG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------TGCGCGCGTGCAGGTCCAGGAGTTTCTGGTCCGCCGGTCGTTGGTCAGGAAGCGACGGCGGTG
ATGGCAACGGA------------------GACG------TCTGTTAGCGAGGAGAG---CGCCGCCGTCGGCGAGGAGAA
GCCGAGGCCATGGAAATGCTGTGACCACCCCCTGTGCACGAGGTCTTCCCCGCCTACCTGCTTCTGCCACGACAAGGTGA
AGAAGTGCGCCAAGACCTGCAAGAAGTGCCTCAAGGACGAGTCGGGCTCTTCCCTCCGCGTGTGCGGCGACCGGTACTTC
GGCTGGGCCGGGCCCAGGTGCCACGAGATCTAGCCTGGCCGCCGCCGTCCGCCGC----------------GGATGTCCA
TGCACGCTCAGCTCTAT-------------CTCTGCACCGGGTGATGGTGAA-CGAATAAAGTGAGA----CGGCCGGCC
GGTCAGTGGCCTGGT----GTACCGAGTCACGGAGTTCTGTATCGCACTGTAGTAGGTGCGCACGTACGTGTAGTTTTGT
TCCGGGTTGTCGTTGT---AGCGCTAGTAGTGTTTAGTTGCATGGTCTCAACATCGATGAATAAGATAAGTTGTGTTGAT
CAGACAGTCGTGCCATCTTTGTTGATGCTGGATAGTTCAAGTTTGAGGTGGTCAAGTGATACATGTACTACCTCTGTACT
GTGCCAAAATATAAGATGATTTTACAGTGCAAAAACGTCTTGTATTTTGGTACAAAAGAGTACCACAAGTGGTTGGTTTC
GTGGGTGTGCATGCATGACCGGTTGATGTTGGAGAAGAACTTAG------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------
>chr3B_948
--------------------------------------------------------------------------------
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-------------------------------------------AA-----------------------------------
----------TGTTGGGAAAGCAAATGTTTTAGCTAGCTGTAAGTGGTAATCACTCGAT---------------------
----------------------------AT--GAATCCAGGTCTTGCCGATGAAGTAGCGACCGCGGCAACGGAGATCGG
CGCCGAGAAGAAGAGGCCGTGGAAGTGCTGCGACAGCCCGTTGTGCAGCAGGTCCATCCCGCCGCGGTGCCGCTGCATGG
ACGCGGTGGAGCAGTGCGACGAGGCCTGCACCCGCTGCGAGGCGTCCAAGTCCGACCCTTCCAAGCGCATCTGCAACGAC
CGGTACCATGGCTGGCCCGGCCCGAACTGCACCGAGCCCGACGCCGACGACGTCCCAAGTGGTAATATATATATCATCAA
GGCTCACTCGAACGTACTAGCTGTATCATAGAACCTCGCTAAGCGTTTCTACTAGTACACCGTACATCCAATATCCATGT
AATTGGTGCTTGCAGGTGCAGGTCCGGTGGTCGTTGCTCA------------TCAAGAAACGGTGGCGGAGGAGACGAGG
CCGTGGGGGAGGTGTTGCGACCGGCCCCTGTGCACCAGGTCCGTCCCGCCGGCCTGCCGCTGCCTGGACAACGTAGACCG
GTGCGCCCCCACCTGCAAGAGATGCGTGGTGTCTATCTTTGACCCGACCGACCACTCCTGTGACGACATCTATCACGGTG
AACCCGGGCCAAGGTGCACTAGGGCCGACCGCAACGGCGACATCTCCAGTGGTGTTGTGGCGGTGGCGGCAGCCGCAGAG
ATAGCCGTTAGCGACAAGAAGAGCATTGTCGGCGGCGAGGAGAAAGCGAGGCCATGGAGGTGCTGCGACGAGCCCATATG
CACCATGTCGTTCCCGCCGATCTGCTTCTGCCGCGACAGGGTGAAGAAGTGCGCCAAGACCTGCAACAAGTGCGACCAGG
ATGAGTCGGACGCTTCCCGCCACGTGTGCGGCGACTCCTACTTCGGCTGGCCTGGGCCAAGGTGTACCAAGCCAAACGAC
GACGACGATGTCCCAAGTGGTATTGGTACCATTATACTAGCTGCTCGAGAGGAATTTGTACTACTACTAGATATGGTGCA
AATGTTTATGTGATGCATGGGTGCGTGCAGGTCCAGGGGTCTCTGCTC------------------AAGCGACGGCGGCA
GTGGCGAGGGTCGAGACGGCGGCAGCGATGATG------GCTGTTAGCGAGGAGCTCAACGTCGTCGACGGC---GAGAA
GGCGAGGCCGTGGAAGTGCTGCGACCAGACACTGTGCACCAGGTCTGCCCCGCCGACCTGCTTCTGCCACGACAAGGTGA
AGAAGTGCGCCAAGACCTGCAAGAACTGCCTCAAGGACGACTCGGGCACTTCCCTCCGCGTGTGCGGCGACCCGTACTTC
GGCTGGCCCGGGCCCAAGTGCACCAAGGTCTAGCGTCGCCGCCGACGTCCGCCGCGGTGTCTAGCTAACTAGGATGTGCA
TGCACGCCCAGCTCTAT-------------CCTTGCACTGGGCGATGGTGAA-CGAATAAAGTGAGTTGATCGGCCGGCC
GGTCAGTGGCCTTGT----GTACCGAGCCACGGAGTTCTGTATCGCACTGTGGTAGGTGCGCACGTACGTGTTGTTTTCT
TCCGGGTTGTCGTTGT---AGCGCTAGTAGTGTTTAGTTGCATGGTCTCAGTATCGATGAATAAGATAA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------
>chr2B_2432
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------GCTAAAAAACCGTTTATAGCGCCTCCGCAGCCACTTT
TTGCGCGCCGCGGAGCGATGGCTTCAGCG-CCGCTGCAAAAAATTGTGCA--CGCCCCGCTCCAACAGACGCGCTATATT
T-------------CTTCTCCTTCTACTCTGACTCGATACATATTCGGCTCCGATTTGTGATACTATAGGC-TAGATAGA
TA-AACGATAGATAGATAGTACATAGATAGATAAACGATAGATTAAACGATACATAGATAGTTCATAGCCTCCTCCTACG
ATAGATAAT-AAAACGATAGATAAAAA----------AACTAATCCTCGTCGTCCTCCTTCTCCTTCTCCGACTCCG---
------CCTCGGTGATGTCCTCCTCCGACGTCTC-AACGAAGGTGTCAAGGTACCGATCGTTGTTGGAATCCCAGGACGA
CGCTGCTCCTAGGTTGATGTTGAATTGAGCGGCCGCCTTCCGCGTACGCCTGTCATTGCGATTGGCGGCTCGCTCCGTCC
TCCTCTCC---------GCCCTCCTTTGCGCGAAGAATTGGCGCTCGTTGATGACGTCCCGCGGGAAGCGTTGGCGCCAT
AGCTCCATGGCTTCCTCGCCCATCTCG
>chr2D_2432
GCTAA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------AAAGTGTTTACAGTGACTCCGTAGCCAGTTT
TTGCGCGTCGCGAAGCGCTGGCTCCAGCGGCCGCAGCAACAAAAA--ACACGCGCACCGCTCCAACAGACGCACCATATT
T-------------GTT----------TCTGACTCGATACACATTTGGCTC-----------------GGCATAGATAGA
TA-AACGATAGATAGATAGTACATAGATAGATAAAAC----------CGATACATAGATAGTTCATAGCCTCCTTCTATG
ATAGATA-------------ATAAAAA----------TACTACTCCTCGTCGTCCTCCGACTCCGCCCTCGACTCTGACT
CCGACTCCTCGGTGATGTCCTCCTCCGATGT----AATGAAGGCGTCAAGGTACCGATCGTCGTTGGAGTCCCGGGACGA
TGTTGCTCCTAAGTCGATGTTGAATTGAGCGGCCGCCTTCCACGTACGCCTGTCA-------TGGCGGCTCCCTCCGCCC
TCCTCTCTTCCCTCTCTGCCCTCCTTTGCGCGAAGAACTGGCGCTCGTTGATGACGTCCTGCAAGAAACATTGGTGCCAC
TGCTCCATGGCTTCCTCGTCCATCTC-
>chr6A_2463
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------AGTTT
TTGCGCGCCGCGGAGCGCTGGCTCCAGCGGCCGCTGCAAAACATTGCACGCGCAGACCGCTCCAGCAGACGCGCTATATT
TTTACTACTCGCGTCTTCTCCTTCTACTCCGACTCGATACACATTCGACTCCGACTC--GATATGATAGGCATAGATAGA
TA-AATAAAAAGGTACTA------------------GATAGATAAAACGATACATAGATAGTTCATAGCCTA--------
---------------GATAGATAAAAAAAGATAGTTCAACTACTCCTCGTCGTCCTCCTCCTCCAACTACAACTCCG---
------CCTCGGTGATGTCCTCCTCCGACGTCTC-AATGAAGGCGTCAAGGTACCGATCGTCGTTGGAGTCCAAGGACGA
CGCTGCTCCTAGGTCGATGTTGAATTGAGTGGCCGCCTTCCGCGTATTCTTGTCCTCGCGATAGGCGGCTCGCTCCGCCC
TCCT---------------------TTGCGCGTACAACTGATGCTCGTTGATGATGTCTTGCGGGAAGCGTTCGTGCCAC
AGCGCTATAGCTTCCTCGTCCATCTCG
>SNPs
-------S------S----------S------S--S----S------S-S--S------S-S-----S---S--------
--S---S--------S-S---S-S--------SS--------S-------S----------------------------S
--S--------------------------SS----S---------S--------S------------------------S
-----------------S-----------S----SSS---S---------S---------------------S-------
------------S----S-S-S-----------------------------S-S--------------------------
----------------------------------------------------S-------S-------------------
S----------------------S-----------S----S--------------S----------------S-------
---------------------------------------------------------S-------------SSSSSSSSS
SSS----S-----------S--------------------------S---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------SSS--------S--S-S--S-SS-SS
S-------------------------S------SS----------------------S-SS-SS-SSSS-----------
-S----------------------S-------S--S------S---S-----------------------------S---
---------------------------------------------S--------------S-------------------
S-------------SSSSSSSSSSSS-SSSSSSSSSSSS-SSS-------------------------------------
----------------S-------------------------S---S-------S----S--------------------
--------------------------------------------------------------------------------
-----------S------------------------------------------S-------------------------
----S--S-----S------------------------------------------S---------S-S-----------
-----------------------------------------------------------S-----SSSS-SSSS-S-S--
SSSSS--------------------------S-S---------S------------S-----------------------
-------SSS---------------S-S----SS--S--SSSSSSSSSSSSS-----SS----S-----S----SS--SS
SSSSSS--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------SS-------S----S-------------S-------
----------------------------------------------------------------------------S---
-S-----S--------------------------------------------S-----S-----S-----S--S------
----S-S-S-------------S--------SSS-SSS---SS--SSSS--------S----SS--SSS-S-SS------
---------S-SS------S--SS----------------------------------S---------------------
-------------------------------------S------------------------------------------
------------------------------------------------------------S-------------------
----------------S-----------------------------------------------S--------S------
------------S-------------------S------S---S------------S--S--------------------
--------------------------------------------------------------------------------
--S-S--SSSSSSSSS------------------------------------------------S---------------
----------------SSS------S---------S------------------------S--S-------------S--
------S--S----------------------S-S---S------------------------------------S----
--S-----------S---------------------S----S-------S----S-S-----------------------
-----SS------------S-S-------------S-S-----------S-----------------S-----S------
-----------S------S--------------S-------S------S-----SS------S--S---S----------
--------------------------------S-----------------------------------------------
--S--------------------------------------------S--------------------------------
--S---S--S-----S----------------------------------------------------------------
------S-------------------S------SS---S--S-----------------------------------S--
----------------------------------S-----S--SS------S--------S---SS--------------
----------------------------S-----------------S-------------SS----------S-S-----
-S----S----------S---------
>forward_1535
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------CGACC
GTGTGGACACCATTA-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------
>reverse_2779
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------CGGTCAGGAAGCAGCTGTTA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------
>forward_2562
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------GCAACAAGTGCGACAAGG
AC------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------
>reverse_4142
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------TGGGAAGCATTTGAGCCAC
A--------------------------
