>input_sequence_63876
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-----------------------------------------------------ATGGCGAGCGGCGGCGTGCTGCCATTG
GCATCGCTGAACCACATCAGCATCGTTTGCAGTTCGTTGGAGGAGTCGCTACGCTTCTACATGAACGTTCTGGGCTTCAT
CCCCATCCGCCGCCCCGGTTCTTTCAACTTCAACGGCGCATGGTAATTAAACAGAATTGAATCATCATCTTTGGGATTAA
GGAATTTACAAGTGGTTGATGCATGAAATTTAATACTAGCTAGAAAACCACGTCAA---------TATATTTATCAAGAG
AGAAGTGGTTGATGATTTTTGCTGCGAATGAAGGTTATTTAACTATGGGATCGGCATCCACCTGTTGCAATGTAAAGAGC
CACAGAGTTTGCCCGGGAAGACGGAAATCAACCCCAAGGATAACCACATCTCGTTCCAGGTACGTACGAA------AATT
GAATATTTTCAGAAACACTGATTGCTCGATGACGTGACAGGAATTAACTTATGTTGTACGCTTGGTTCCGCGTCACCCTT
GCACATCAACGAGGTGTATGGAGAATCACGTCACAACTTCACAATGTCACGCATGCATGGACGCCGCGCTATTTGCTCTG
TTCCGAGATGAATGACGGGCGGTGCGTGTGTGTATGCATGTCTTTGCAGTGCGAGAGCATGGTGGCGGTGGAGCGGCGGC
TGAAGGAGCTGGGCATCCCGTACATCCAGCGGTGCGTGGAGGAGGGCGGCATCTACGTGGACCAGATCTTCTTCCACGAC
CCCGACGGCTTCATGATCGAGATCTGCAACTGTGACAACCTCCCCGTTATTCCGCTTGCCGATCATACCTTCACCATGGC
CGCCTGCAAGAGGGTCGTCGCCGTCAAGCAACAGCAGAAGCCGCTGGTGGTACAAGCTCCTCCCCTGCAGACGACGGCGA
CAACCACGGCAGCACAGTGCGTGCCGTCAGCTAACAAGGCGATGCAGCGTGTGGGCGGCGAGGAGGCGGCACACGTCTCG
TGCGCGTGA-----------------------------------------------------------------------
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>chr1B_1_TraesCS1B01G136100
CTTCTCGATCTTTCAGTCGCCGTCCCGCGGGAATAAGAAGGTGGATGGATGGCTAAGGAACAGGGAGCATGGATGCCAGT
CTGATGTGCCATCAAGGAACGCTGCGGAGAAAGTCGCGGACCACCGCGGCGGCGACAACGGATTCGTCAACCTCACCATC
CGGCGACTAACATGAGCACTAGCTGACACGATGGTTTAGATGCAAGCATTTTCACTAATCTATGATATTATGCAGGATGA
CAAGGATGCTATTACGAGCTGGATGTACCTCCTGAACTAAGTTAGTTCTAGCTTTGTAGTAATCTTCTTTTCTCCTCGTT
TGCCCCGTTCTTCGCTTCTTCAAATGGCTGCTTACAGCCATGGCACTACGGTGCTCAATGTAAGCTTCATGTAATTGACC
ATTGGTCCTAGGCCTGGCCTGTTTTGAAATATATAAGGTAGAATCTCATCTACCTTTTCATTTCAAAAAAGAAGTATATC
ATACAATAGTATGTCCCTCATATATGATACTCTCTATTACGAGCGGTCTTACACCGTCCTTGCAGCTAATTAATCCAGTT
GTCCGGCATCAATTATGAAGAATTACAGGAGTACTTATGACTAAATCTGGTTAGGATAAATATAGTTTT-TTTTACATGT
AAAACATGTCGCTCGTGTTACATTTCCGAAGAACTGGGACTCCTCGTTTTTGTTCTTGCCCCAGCCATCCTAGTTATGAC
CCTCTCTTATCCTCTCTGGCCTCCGCCACATATATAATAGCAACAAGGT------------ATATATATTCATCGGCACA
GCTCCAACATTTTGGAAGAGACCGCCATCTCACATTCTCACGCATGCGCGCAGGTGCATGCTGGACGATGTGCCCATTGC
ACCTAGATTCGCCGCTTGCAATTTCATGGGCATAGATGGTAGATCGTCCCAGCAACGACGATCGGCTTTGAGGCAATAGT
TCAGTGATAGCCTGATACGTGAGGACGCGCGGTAAGCACGCACGAGAGCGGCAATGGCGAGCGGCGGCGTGCTGCCATTG
GCATCGCTGAACCACATCAGCATCGTTTGCAGTTCGTTGGAGGAGTCGCTACGCTTCTACATGAACGTTCTGGGCTTCAT
CCCCATCCGCCGCCCCGGTTCTTTCAACTTCAACGGCGCATGGTAATTAAACAGAATTGAATCATCATCTTTGGGATTAA
GGAATTTACAAGTGGTTGATGCATGAAATTTAATACTAGCTAGAAAACCACGTCAA---------TATATTTATCAAGAG
AGAAGTGGTTGATGATTTTTGCTGCGAATGAAGGTTATTTAACTATGGGATCGGCATCCACCTGTTGCAATGTAAAGAGC
CACAGAGTTTGCCCGGGAAGACGGAAATCAACCCCAAGGATAACCACATCTCGTTCCAGGTACGTACGAA------AATT
GAATATTTTCAGAAACACTGATTGCTCGATGACGTGACAGGAATTAACTTATGTTGTACGCTTGGTTCCGCGTCACCCTT
GCACATCAACGAGGTGTATGGAGAATCACGTCACAACTTCACAATGTCACGCATGCATGGACGCCGCGCTATTTGCTCTG
TTCCGAGATGAATGACGGGCGGTGCGTGTGTGTATGCATGTCTTTGCAGTGCGAGAGCATGGTGGCGGTGGAGCGGCGGC
TGAAGGAGCTGGGCATCCCGTACATCCAGCGGTGCGTGGAGGAGGGCGGCATCTACGTGGACCAGATCTTCTTCCACGAC
CCCGACGGCTTCATGATCGAGATCTGCAACTGTGACAACCTCCCCGTTATTCCGCTTGCCGATCATACCTTCACCATGGC
CGCCTGCAAGAGGGTCGTCGCCGTCAAGCAACAGCAGAAGCCGCTGGTGGTACAAGCTCCTCCCCTGCAGACGACGGCGA
CAACCACGGCAGCACAGTGCGTGCCGTCAGCTAACAAGGCGATGCAGCGTGTGGGCGGCGAGGAGGCGGCACACGTCTCG
TGCGCGTGAGATGGAAGATGTAGCATGTGTGTGTGGATAGCTAACTTTGCCGAAATGGTGGCGTGCGCGTCGCGGATGGG
GTGGTTCATTCTTGTCGCGGATGGGATATTAGGATGTGTGGGTCCCGTGCATGCGGGTGTCATGTACGTGGGGCACCCTG
CTAAAAAATGCAATATATCCAACATATTGTATCACGCTGTTGTCCTTGTTTGTCCAAATCTCGTCACCCCTCTGGTTTTG
AGGCCGCCATACACTTGTTGCTCCCATCAATTCGCCGACTCCAGCCA--TCTCCTCAGTGGCGAAAATATCGTGGGTTCA
AGTTCACTAGATTGTCTATCATGTTCAATTTTTTAACACATACTCCCTCCGTTCCTAAATATAAGTCTTTTTAGAGATTT
CGACAAGGGACTACATACGGAGCAAAATGAGTGAATCTACACTCTAAAATATGTCTATATACATTTGTATGTTATAGTTC
ATTTAAAACCACTAAAAAGACTTATATTTAGGAACGGAGGGAGTACGTTAACAAATTTCAGGGTGTACCCCA--------
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-----------------------------------------------------------------------TAACTTAAA
CATGGAGTTTCACTGCGTCCCT-----GCACCCCCTCCCATTTGGAGAAAGCTAGGGGTTAGATGTTTCAAGGCAAACCC
AAACAGGAGATGCATCAAACCGCGCGAGTAAGGGTCGGAACCAC--TTGTCCTTTTTCATGTGATCCTAATATGAGTACA
CTACTAGGGGTGTGAAGAGTACAAGGGAATACCACAATATTTGCGAGTCGCCCCCGCGTCGCCCCCGTCTCGGGCGACTT
GGGCGGCTCTTCAAACCCTAGCCGCTAGGGTCACCACCACCTCCATCCCTTCCCTCCGCCGCCGCCAGAGGACGCCGCTG
GGCTAAGCCGGGGGCTGATGGCGGTGGCGGAGACTCCTTCCTGGATCACGTCGGAGGGGGTGGGGCGGGACCTCCACATG
CGTGACGGCGCAACGGCGATCTGATCCATGGTGGCGCGGTGGCGTGCTCCGGGCGGA
>chr1A_45
--------------------------------------------ATGGACGGCCAAGGAACAGGGAGCATGGACGCCAGT
CTGATGTGCCATCAAGGAACGCCGTGGCGAAAGTCGCGGACCACCGCGGCGGCGACATAGGATTCGTCGACCTCACCATC
CAACGGCTAACATAAGCACTAGCTGACACGATGGTTTAGATGCAAGCATTTTCACTAATCTATAATATTATGCATTACAG
AGATG---------------------------------------------------------------------------
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-------------------------------------------------------------------------GTATATC
ATACAATAGTATGTCCCTCATATATGATACTCCCTATTACGAGCGGTCTTACACCGTCCTTGCAGCTAGTTAATCCAGTT
GTCCGGCATCAATTGGGAAGAATTACAGGCATACTTATGACTAAATATGGTTAGGATAAATATAGTTTT-TTTTACATAT
AAAACATGTCGCTCGTGTTACATTTCGGAAGAACTGGGACTCCTCGTTTTTGTTCTTGCCCCAGCCATCCTAATTATGAC
CCTCTCTTGTCCTCTCCGGCCTCC-CCACACATATAATAGCAACAGGGT------------ATATATATTCATCGGCACA
GCTCCAACATTTTGGAAGAGACCACCATCTCACGTTCTCACGCATGCGCGCAGGTGCATGCTGGACGATGTGCCCATTGC
ACCTAGATTCGCCGCTTGCAATTTCATGGGCATAGATGATAGATCGTCCCAGCAACGACCATCGGCTTTGAGGCAATAGT
TCAGTGATAGCCTGGTAGGTGAGGACGCGCGGTAAGCACGCACGACAGCGGCAATGGCGAGCGGCGGCGTGCTGCCATTG
GCATCGCTGAACCACATCAGCATCGTTTGCAGTTCGGTGGAGGAGTCGCTACGCTTCTACATGAATGTCCTGGGCTTCAT
CCCCATCCGCCGCCCCGGATCTTTCAACTTCAACGGCGCATGGTAATTAAACAGAATTGAATCATCATCTTTGGGATTAA
GCAATTTACAACTGGTTGATGCATGAAATGTAATA---GCTAGAAAACCACATCAATAGTACTAGTATATTTATCAAGAG
AGAAGTGGTTGATGATTTTTGCTGCGAATGAAGGTTATTTAACTATGGGATCGGCATCCACCTGTTGCAATGTGAAGAGC
CCCAGAGTTTGCCCGGGAAGACGGAGATCAACCCCAAGGATAACCACATCTCATTCCAGGTACGTACTGCTACTCCAATT
GAATATTTTCAAAAACACTGATTGCTCGATGACGAGACAAGAATGAACTTATGTTGTACGCTTC----------------
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--CCGAGATGAATGATTTGCGGTGCGTGTGTGTATGCATGTCTTTGCAGTGCGAGAGCATGATGGCGGTGGAGCGGCGGC
TCAAGGAGCTGGGCATCCCGTACATCCAGCGGTGCGTGGAGGAGGGCGGCATCTACGTGGACCAGATCTTCTTCCACGAC
CCTGACGGCTTCATGATCGAGATCTGCAACTGCGACAACCTCCCGATCGTCCCGCTTGCCGACCATACCTTCACCATGGC
CGCCTGCAAGAGGGTCGTCGCCGTCAAGCAACAGCAGAAGCCGCTGGCGGTACAAGCTCCTCCCCTGCAGACGACGGCGA
CAACCACGGCGGCACAGTGCGTGCCGTCAGCCAACAAGGCGATGCAGCGTGTGGGCGGCGAGGAGGCGGCACACGTCTCG
TGCGCGTGAGATGGAAGATGTAGCATGTGTGTGTGGATAGCTAACTTTGCCGAAATGGTGGCGTGCGCATCGCGGATGGA
GTGGTTCATTCGTGTCGCGGATGGGATATTAGGATGTGTGGGTCCCGTGCATGCGGGTGTCATGTGCGTGGGGCACCCTG
CTAAAAAATGCAATATATCCAACATATTGTATCACGCTGTTGTCCTAGTTTGTCCAAATCTCGTCACTCCTCTGGTTTTG
AGCTCGCCATGCACTTGTTGCTCTCGTCAATTCTCCT------GCCA--TCTCTTCAGTGGAGAAAATATCGTGGGTTCA
AGTACACTCGATTATCTAGCATGTTCAAAATTTTAACACATAC-------------------------------------
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>chr1D_577
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----------------GAAGAATTACAGGAGTACTTATGACTAAATCTGGTTAGGATAAATATAGTTTTGTTTTACATGT
AAAACATGTCGCTCGTGTTACATTTCCAAAGAACTGGGACTCCTCGTTTTTGTTCTTGCCC-AGCCATCCTAATTATGAC
CCTCTCTTGTCCTCTCCGGCCTCTGCCACATATATAATAACAACAAGGTATATATACCCCTATATATATTCATTGGCACA
GCTCCAACATTTTGGAAGAGACCACCATCTCACATTCTCACGCATGCGCGCAGGTGCATGCTGGACGATGTGCCCATTGC
ACCTAGATTCGCCGCTTGCAATTTCATGGGCATAGATGGTAGATCGTCTCAGCAACGACGATCGGCTTTGAGGCAATAGT
TCAGTGATAGCCTGATAGGA--------GCAGTAAGCACGCACGACAGCGGCAATGGCGAGCGGCGGCGTGCTGCCATTG
GCATCGCTGAACCACATCAGCATCGTTTGCAGTTCGGTGGAGGAGTCGCTACGCTTCTACATGAATGTCCTGGGCTTCAT
CCCCATCCGCCGCCCCGGATCTTTCAACTTCAACGGCGCATGGTAATTAAACAGAATTGAATCATCATCTTTGGGATTAA
GCAATTTACAACTGGTTGATGCATGAAATTTAATA---GCTAGAAAACCACATCAATAGTACTAGTATATTTATCAAGAG
AGAAGTGGTTGATGATTTTTGCTGCGAATGAAGGTTATTTAACTATGGGATCGGCATCCACCTGTTGCAATGTGAAGAGC
CACGGAGTTTGCCCGGGAAGACGGAGATCAACCCCAAGGATAACCACATCTCGTTCCAGGTACGTACT---ACTCCAATT
CAATATTTTAAGAAACACTGATTGCTCGATGACGAGACAGGAATGAACTTTTGGTGTACGCTTGGTTCCGCGTCACCCTT
GCACATCAACGAGGTGTATGGAGAATCACGTC-------CACATTGTCACGCATGCATGGATGCCGCGCTATTTGCTCTG
TGCGGAGATGAATGATTTGCGGTGCGTGTGTGTATGCATGTCTTTGCAGTGCGAGAGCATGGTGGCGGTGGAGCGGCGGC
TCAAGGAGCTGGGCATCCCGTACATCCAGCGGTGCGTGGAGGAGGGCGGCATCTACGTGGACCAGATCTTCTTCCACGAC
CCCGACGGCTTCATGATCGAGATCTGCAACTGCGACAACCTCCCCGTTATCCCGCTTGCCGACCATACCTTCACCATGGC
CGCCTGCAAGAGGGTCGTCGCCGTCAAGCAACAGCAGAAGCCGCTGGCGGTACAAGCTCCTCCCCTGCAGACGACGGCGA
CAACCACGGCAGCACAGTGCGTGCCGTCAGCCAACAAGGCGATGCAGCGTGTAGGCGGCGAGGAGGCGGCACACGTCTCG
TGCGCGTGAGATGGAAGATGTAGCATGTGTGTGTGGATAGCTAACTTTGCCGAAATGGTGGCGTGCGCGTCGCGGATGGG
GTGGTTCATTCGTGTCGCGGATGGGATATTAGGATGTGTGGGTCCCGTGCATGCGGGTGTCATGTACGTGGGGCACCCTG
CTAAAAAATGCAATATATCCAACATATTGTATCACGCTGTTGTCCTAGTTTGTCCAAATCTCGTCACTCCTCTGGTTTTG
AGCTCGCCATACACTTGTTGCTCTCGTCAATTCTCCGACTCCAGCCATCTCTCTTCAGTGGCGAAAATATCGTGGGTTCA
AGTACACTCGATTATCTAGCATGTTCAAAATTTTAACACACAT-------------------------------------
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-------------------------------------AGGGAGTACATTAACAAATTTCAGGGTGTGATAAAAAACTGAC
CCCACAACTTTCACATGGAATACCCCACAACTTACACATGGATTTTTTTTTTGCAAAAAAAACTTCCAATCTATTCATCT
TCAATAATGGTAGTACAACGAACACTAGAAATAATAAAAATTACATCCAAATCCATAGACCACCTAGCGACTACTACAAG
CATTGAAGCGAGCCGAAGGCGCGCCGCTGTCAACGCTCCTCCCTCATTGGAGCCCGGCAAACCTTATTGTAGTAGACAGT
CCGGAAGTCGTCGTGCTAAGGTTCCATAGAACCAACACACCAGAACAGCAACCGCCGCCGATGAAGAGTGTAGATCAGAA
GGATCCAACCTGAGAATACCAGAACATAGACGAACGACGAACAGATCCGAGCAAATCCACTAAAGACAGATCCGTCGGAG
ACACACCTCCACACGCCCACCGACGATGCTAGACGCATCAACGGAACGGGGACTAAGCAGGGAGACCTTTTATTCCATCT
TCAGAAAGCCGCCGCCATCTCGCCGTCCTGAGCGGTACACAAACCCTAACAAAACTCGAAAAAAGATCTAAAAACGGAGA
CCTCCCACCGGCGAGGGCCAGGATCCACTCCGCCACCATGGCCCTAAGGCCACCAAAGACAGGGTGGACCGGCGCCGGCG
CCAGCGGGAGGCAGAGAAACCCTACCTTTTTTTTGGGAGGCGGCGGCTGGCTAGACGGGACTTGATCTGGCTAGCTTACA
CATGGAATTTCACTGTGTCTCTCTCCCGCAGCCCCTCCCATTTGGAGAAAGCTAGGGGGTAGATGTTTCAAGGCAAACCC
AAACAGGGGATGCATCAAATCACGCGAGTAAGGTTCGGAACCACACTTCTCCTTTTTCATGTGATCCTAATATAGGTAC-
--ACTAGGGGTGTGAAGAGTACAAGGGAATACCACAA-------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S---S-------------------S------
----------------------S-S--S-----------------------------SS---------S-----------
-SS--S-------S-------------------------------------------------S----------SS-SSS
SS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
--------------------------------S-----------------------------------S-----------
--------------SS----------------------------------------------------------------
------------------------------------------------------------------------S-------
--------S-------S---------------------------------------------------------------
-----------------------S--------------------------------------------------------
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-----------------S---------------------------S----------------------------------
------------------------------------S----------------------------S--S-----------
------------------S-------------------------------------------------------------
-S---------S-----------------------SSS-------------S----------------------------
-------------------------------------------------------------------------S------
-------------------------S-----------------------------------------SSS----------
----------------------------------S---------S-----------------------------------
--------------------------------SSSSSSS----S-----------------S------------------
-S-------------SSS--------------------------------------------------------------
-S------------------------------------------------------------------------------
--------------------------------S-----------------S-----------S-----------------
-----------------------------------------------S--------------------------------
-------------------------------S------------------------------------------------
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-----------S--------------------------------------------------------------------
----------------------------------------------S--------------------S------------
--SS-------------------S-S-------S-------------------S--------------------------
---S----S----S----S---------SS-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S-------------------SSSSS---------
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-------------------------------------------------------------------------S----S-
------S--------S---S----------S---------------------------S---------------------
-------S-----------S-S-----------S--------------S------------------------SS----S
SS-----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_273
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-------------ACGAGCTGGATGTACCTCCT-----------------------------------------------
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>reverse_1823
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--------------------------------------------------------------TCATACCTTCACCATGGC
CG------------------------------------------------------------------------------
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>forward_371
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-------------------------------TTACAGCCATGGCACTACGG-----------------------------
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>reverse_2244
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---CCGCCATACACTTGTTGCTC---------------------------------------------------------
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