>input_sequence_63848
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-------------------------------------------CCGGAGCGGCGAATCTCGGCAGGCACCACCGCCCAGC
AAGCAGCCGCCGTCAAGGCCAGCGATGACTGCCGGCGCCGCGAGCGCGGGCGCGGTCCGGCGGGCGGTCGACAGGGCGTG
CGCGGCCGCCAGGGGGGCGCGGCGCGCGCTGGCGCGGTTCGCGCCGCGGCCGTCGGCGTTCGGCGCGGCGGCGGACGCGG
AGGCCGCGGCGGTGCGCGGGGTCCGCAACGCGCGCACGTTCCGGTACCACTACGCCGCGCTGCAGTGGGCGCTCCTCCTG
GCGTCGCTGGCCGCGGCGGGCCACCGGGCGTCGGTGCTCTTCCTCATGGCCGCCTCCAAGGTCCTCCTCGTCTGCCTCGG
CCTCCTCGCGCCGTTCCCGAGATTGGTGCTGCTCCGCCGGCTCGTCGCCGCGGCGTTCGTCGCGCTCGTGCTCGCCGACA
TCGCCGCGGCCGGCGCCGTGGCCAACCTCATGGCCGCGCTGGCGGTGGGCGTTCCGGTCATCGTGCTCCACGCCTCGTTC
CGCGTCCGCGATGACCTCGAGGGGCCCTCCACGGAGAACGGCGAGGAGGAGGAGGCGGATGAGGAGGCGGCGGTCGTGGA
GAAGAGGGAGGACGGCGATACGGAGGCAGGCCCCACGCGGCGGTCCACGGCGGTCGCGCCTCGATCACCAAAGTGACGGG
CGGTGCGAGCTAGGCGGCTGGCTGATCGATCAGACGATTCAGAGTCTTGGTCAAAACTGTCTA------ACGATCTTGAC
TGCTTCTTGATATAGATCAATCATACTACTGGTACTCGTATTTTTGGCTGAAGTTTCGAATCGAATCGGCTAATACTCCT
ACAACAACTGGACGATGAATGAGGATTACGTAGACCCGATGTGGATGCATCCATTTCCTTAGTGTATCTATATTGGACTA
ATCTTTGATCATATATACACTTAGCAGAAAGCCAGAAAAGAATGAAATACATAATCAAAATTGGCACTCGGA--------
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>chr1B_1_TraesCS1B01G230200
CCCTGCTTAATCAATGAAACACCAGGCTTTGCTGGCCAGTTCAAAAAAAAAAACACAATCGTTGGTTGAATGAAGCACTT
CCATCCTCCCAAAACGATTTTCCTCTAATGAATAATAATCCCCAATTCATGTTTGTTGTAGCCAAAAGCTCAATCGTGGC
AAGGGCCGCCTCTCTCCGTCGAGGCCGACAAGACTGCACCTGGTGAGATGCTTCTTTGAGCCTCGTGCAAAAGAAAGGGA
GCTTTCTGCAGCGACTAGTTTAGACTAGCCATAGTGGGAGTAACTTCAGCAGTAACATCGAGTCCAACTCAACAAATTTG
CTTATGTGGCAGTGAGTTAATGAGGAGAGAGATGGTTATGGTAACTTAGCTAGTTACTATAACATCATATGTCCCAATGG
AATATGAGTATATAACCTAATAAATGAAGCTTTGCATGTTACCACACTTATGTTACTACCCACTGTGAAGGTAGTAACAT
AGTCTAGGGACATGTGTATGTTACTAGTGTATGTTACTACCCATTGTGGCTAGTCTTATGCTTCAGTCAACGCAAGAAAT
GCATGTAAT-AAAATTCTTAATAATTCAATTAATAGCTTACGAAAGAAATAATTTCCTTCTGTAAATAGGAGATGCGCAA
ATCTTCTTCGTGTTCTAAAAACAGAAACAGAAGAAGCTGAGTCGTCGTGTATTCGTACTCGTTCCGTTCAGAAAAAAGCA
TTGCAATAT--TGCCAAATAGAAAAGTAGGCAAGTAGGGGAGGATCGTGTTGGTGCCCCGCGGCCAAACGTTCGGGGAAG
AACCAACCATGGCGCACCGACCAGGTCGCTGCCGCAACAAAACCGACGCGGAAACGAGTGGAAAAGTCCCGGTTTTTCGC
CGTCACGGCGAGGGCGAGGCCCCGCCTTTAACCCCGGGCGCGCCGTTTGTTAAAACCCGCGTCTTTGACTCGCTCCGCCC
CCCGTCCCGTGCCATCCGGCTCCCTTGAGTCCAAACCCAGCAACCGGAGCGGCGAATCTCGGCAGGCACCACCGCCCAGC
AAGCAGCCGCCGTCAAGGCCAGCGATGACTGCCGGCGCCGCGAGCGCGGGCGCGGTCCGGCGGGCGGTCGACAGGGCGTG
CGCGGCCGCCAGGGGGGCGCGGCGCGCGCTGGCGCGGTTCGCGCCGCGGCCGTCGGCGTTCGGCGCGGCGGCGGACGCGG
AGGCCGCGGCGGTGCGCGGGGTCCGCAACGCGCGCACGTTCCGGTACCACTACGCCGCGCTGCAGTGGGCGCTCCTCCTG
GCGTCGCTGGCCGCGGCGGGCCACCGGGCGTCGGTGCTCTTCCTCATGGCCGCCTCCAAGGTCCTCCTCGTCTGCCTCGG
CCTCCTCGCGCCGTTCCCGAGATTGGTGCTGCTCCGCCGGCTCGTCGCCGCGGCGTTCGTCGCGCTCGTGCTCGCCGACA
TCGCCGCGGCCGGCGCCGTGGCCAACCTCATGGCCGCGCTGGCGGTGGGCGTTCCGGTCATCGTGCTCCACGCCTCGTTC
CGCGTCCGCGATGACCTCGAGGGGCCCTCCACGGAGAACGGCGAGGAGGAGGAGGCGGATGAGGAGGCGGCGGTCGTGGA
GAAGAGGGAGGACGGCGATACGGAGGCAGGCCCCACGCGGCGGTCCACGGCGGTCGCGCCTCGATCACCAAAGTGACGGG
CGGTGCGAGCTAGGCGGCTGGCTGATCGATCAGACGATTCAGAGTCTTGGTCAAAACTGTCTA------ACGATCTTGAC
TGCTTCTTGATATAGATCAATCATACTACTGGTACTCGTATTTTTGGCTGAAGTTTCGAATCGAATCGGCTAATACTCCT
ACAACAACTGGACGATGAATGAGGATTACGTAGACCCGATGTGGATGCATCCATTTCCTTAGTGTATCTATATTGGACTA
ATCTTTGATCATATATACACTTAGCAGAAAGCCAGAAAAGAATGAAATACATAATCAAAATTGGCACTCGGATTTACTGT
GACAATAT------------ACATTTTGTCA-CTGCATCGATCTGAACACTGGATGCGAGCTTGCATTCATCTTGACCGC
AGCGACGGGTGAACGGCTCTGTTCGCACCGCCAGTCCTGCAATGTACTCCCTCCGTCCGGAATTACTTGTCGCAAAAATA
GATAGAAATGGATGTAACTAGAACTAAAATATGTCTAGATACATCCACTCCCACGAGAAGTAATTCCGGACGGAGGGAGT
AGGTGTAAACAACTATTATCTCTCTAAAATTATCTAAGGGCGTGTATAATGATTGATAAGATAGTCTTATCTTAAGTCTT
GCATGTGATTTAGAGATGACAAAAAAAATTGTCTACAATGGATCCTCTCTTAGCCTTTTCTTGAATAACTAGCAATTTCT
AAAAATATGATGAGACATATTGTGTTAAAAGATCACCTCTTGCCTTCTCTTAAATAAAAGAAGACAAGCCTTTTCTTATG
AGTTCTCTCTCCTCCACCTCATCATCTATCCTACATGGCACGGGAAAATATCAGGTGCTCCCGTGCGAGCTCAGCCGTTG
GATCTTAGATCCAAGAGCTCCTGTGAAATGATGAACATTTTTGCAAAAAAGCCCTCATAAAATCTAAAAAATGCGCACAA
GTACAGCAGCTACAGCAGCTCCCTGTTTGCCGTTGGATCTGAGATCCAAGGGCCCAGAAGTCCGTATCATGGGAGCACAT
ATGCTCCCGTATCACAGGATACTCTCCCTACGTGGCACTCCTAAGATAACACCATTGTACATGCCCTAATCTAGCATAGG
GATCCCCGAGAAGTTTTCTTTTCCTTCTTTTTCCTTTGTGACCGTCTCCACCACGTGGCGCATTTGTGTTGCTGCGATTG
TGATTGTG--------------TGCTTGTTTGAAACACAAGTTTCTGAATTTAGGCTGATATATTAGTTTTTGGGTAGAT
GATGAATTTTAGGGCACGAGGTCCCTAGTAGATGATGTATTTTAGCCACTCAAACTTCT
>chr1A_179
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------------------TCGTGGCTGACAAGACTGCACCTGGTGAGATTCTTCC---AGCCTCATGGAAAGGAAAGGGA
GCTTTCTGCAGCGGCTAGT-------------------------------------------------------------
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-------------------------------------------------------TTATGCTTCACTCAACGCAAGAAAT
GCATGTAAT-AAA-TTCTTAATAATTCAATTAATAGCTTACGAAACAAATAATTTCCTTCTGTAAATAGACGATACGCAA
ATCTTCTTCA-GTTCTAAAAACAGAAAGAGCAGAAGCTGAGTCGTCGTGCATTCGTACTCGTTCTGTTCAGAAAACAGCA
TTGCAATATC--GCCAAAAAGAAAAGTAGGCAAGTAGGGGAGGATCGTGTTGGTGCCCCGCGGCCAAACGTTCGGGGAAG
AGCCAACCATGGCGCACCGACCAGGTCGCTGCCGCAACAAAACCGACGCGGAAACGAGTGGAAAAGTCCCGGTTTTTCGC
CGTCACGGCGAGGGCGAGGCCCCGCCTTTAACCCCGGGCGCGCCGTTTGTTAAAACCCGCGTCTTTGACTCGCTCCGGCC
CCCGTCCCGTGCCATCCGGCTCCCTTGAGTCCAAACCCAGCAACCGGACCGGCGAATCTCGGCAGGCACCACCGCCCAGC
AAGCAGCCGCCGTCGAGACTGGCGATGACTGCCGGCGGCGCGAGCGCGGGCGCGGTCCGGCGGGCGGTCGACAGGGCGTG
CGCGGCCGCCAGGGGGGCGCGGCGCGCGCTAGCGCGGTTCGCGCCGCGGCCGTCGGCGTTCGGCGCGGCGGCCGACGCGG
AGGCCGCGGCGGTGCGCGGGGTCCGCAACGCGCGCACGTTCCGGTACCACTACGCCGCGCTGCAGTGGGCGCTCCTCCTG
GCGTCGCTGGCCGCGGCGGGGCACCGGGCGTCGGTGCTCTTCCTCATGGCCGCCTCCAAGGTCCTCCTCGTCTGCCTCGG
CCTCCTCGCGCCGTTCCCGCGCTTGGCGCTGCTCCGCCGGCTCGTCGCCGCGGCGTTCGTCGCGCTCGTGCTCGCCGACC
TCGCCGCGGCCGGCGCGGTCGCCAACCTCATGGCCGCGCTGGCGGTGGGCGTCCCGGTCATCGTGCTCCACGCCTCGTTC
CGCGTCCGCGACGACCTCGAGGGGCCTTCCACGGAGAACGGCGAGGAGGAGGAGGCGGACGAGGAGGCGGCGGTCGTGGA
GAAGAGGGAGGACGGCGATACGGAGGCAGGCCCCACGCGGCGGTCCACGGCGGTCGCGCCACGATCGCCAAAGTGACGGA
CGGTGCGAGCTAGGCGGCTGGCTGATCGATCAGACGATTCAGAGTCTTGGTCAAAACTGTCTCACTCTCACGATCTTGAC
TGCTTCTTGATATAGATCAATCATACTACTGGTACTCGTATTTTTGGCTGAAGTTTCGAATCGAATCGGCTGATACTCCT
ATAACAACTGGACGATGAATGAGGATTACGTAGACCCGATGTGGATGCATCTATTTCCTTAGTATATCTGC--TGGACTA
ATCTTTGATCATATATACACTTAGCAGAAAG--------GAATGAAATACATAATCAAAATTGGCACTCGGATTTACTGT
GAC---AT------------ACATTTTGTCA-GTGCATCGATCTGAACACTGAATGCGAGCTTGCATTCATCTTGACCGC
AGCGACGGGTGAACGGCTCTGTTCGCACCGCCAGTCCTGCAATGTACTA-------------------------------
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--GTGTAAACAACTAATATCTCTCTAA--TTAT-----------------------------------------------
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-----------------------------------------------------------------CTAATCTAGCATAGG
GATCCCCGAGAAGTTTTCT---------------------ACCGTTTCCACCACATGGCGCATTTGTGTTGCTGCGATTC
TGATTGTGTGCTTGTTTGCATTTGCTTGTTTGAAACACAAGTTTCTGAATTTAGGC------------------------
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>chr1D_528
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------------GGCTAGT-------------------------------------------------------------
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-------------------------------------------------------TTATGCTTCAGTCAACGCAAGAAAT
GCATGCAATAAAA-TTCTTAATAATCCAATTGATAGCTTACGAAACAAATAATTTCCTTCTGTAAATAGAAGATACGCAA
ATCTTCTCCGTGTTTTAAAAACAGAAGGAACAGAAGCTGAGTCGTCGTGTATTCGTACTTGTTCTGTTCAGAAAACAACA
TCGCAATATATTGCCAAAAAGAAAAGTAG--------GGGAGGATCGTGTTGGTGCCCCGCGGCCAAACGTTCGGGGAAG
AACCAACCATGCCGCACCGACCAGGTCGCTGCCGCAACAAAACCGACGCGGAAACGAGTGGAAAAGTCCCGGTTTTTCGC
CGTCACGGCGAGGGCGAGGCCCCGCCTTTAACCCCGGGCGCGCCGTTTGTTAAAACCCGCGTCTTTGACTCGCTCCGGCC
CCCGTCCCGTGCCATCCGGCTCCCTTGAGTCCAAACCCAGCAACCGGAGCGGCGAATCTCGGCAGGCACCACCGCCCATC
AAGCAGCCGCTGCCGAGGCGAGCGATGACTGCCGGCGCCGGGAGCGCGGGCGCGTTCCGGCGGGCGGTCGACAGGGCGTG
CGCGGCCGCCAGGGGGGCGCGGCGCGCGCTGGCGCGGTTCGCGCCGCGGCCGTCGGCGTTCGGCGCGGCGGCGGACGCGG
AGGCCGCGGCGGTGCGCGGGGTCCGCAACGCGCGCACGTTCCGGTACCACTACGCCTCGCTGCAGTGGGCGCTCCTCCTC
GCGTCGCTGGCCGCGGCGGGGCACCGGGCGTCGGTGCTCTTCCTCATGGCCGCCTCCAAGGTCCTCCTCGTCTGCCTCGG
CCTCCTCGCGCCGTTCCCGCGCTTGGCGCTGCTCCGCCGGCTCGTCGCCGCGGCGTTCGTCGCGCTCGTGCTCGCCGACA
TCGCCGCGGCCGGCGCCGTGGCCAACCTCATGGCCGCGCTGGCGGTGGGCGTCCCGGTCATCGTGCTCCACGCCTCGTTC
CGCGTCCGCGACGACCTCGAGGGGCCCTCCACGGAGAACGGCGAG---------------GAGGAGGCGGCGGTCGTGGA
GAAGAGGGAGGACGGCGATGCCGAGGCAGGCCCCACGCGGCGGTCCACGGCGGTGGCGCCACGATCGCCAAAATGACGGA
CGGTGCGAGCAAGGCGGCTGGCTGATCGATCAGACGATTCAGAGTCTTGGTCAAAACTGTCT------CACGATCTTGAC
TGCTTCTTGATATAGATCAATCATACTACTGGTACTCGTATTTTTGGCTGAAGTTTCGAATCGAATCGGCTAATACTCCT
ATAACAACTGGACGATGAATGAGGATTACGTAGACCCGATGTGAATGCATCCATTTCCTTGGTATCTGTTGGACT-----
ATCTTTGATCATATATACACTTAGCAGAAAG--------GAATGAAATACATAATCAAAATTGGCACTCGGATTTACTGT
GAC---AATATACATTTTGAACATTTTGTCAGGTGCATCGATCTGAATGCGAGCT------TTGCATTCATCTCGACCGC
AGCGACGGGTGAACGGCTCTGTTCGCACCGCCAGTCCTGCAATGTGGGAGT-----------------------------
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--------ACAACTAATATCTCTCTAAAATTAT-----------------------------------------------
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-----------------------------------------------------------------CTAATCTAGCATAGG
AATCCCCGAGAAATTTTCTTTTCCTTCTTCTTCCTTTGTGACCGTTTCCACCACGTGCCGCATTTGTGTTGCTGCGATGG
TGATTGCGTGCTTGTTTGCATTTGCTTGTTTGAAACACAAGTTTCTGAATTTAGGCCGATATATTTAATTTTTGGGT---
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS---S---S-----------------------S----SSSS------S--S---S--------
-------------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------
-------------S-------------------------------S-----------------------S----S-----
---------------------------S--S---------------------------------S----------S----
------------------S-------------------------------------------------------------
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--------------S----S------------------------------------------------------------
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--------------------S-----------------------------------------------------------
-------------------S-S----S-----------------------------------------------------
----------------------------------------------------S---------------------------
-----------S-----------------------------------------------S--------------------
------------------------------------------------------------S-----S------------S
--------------------------------------------------------------S-----------------
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-S-------------------------------------------------------------S-----SSSS-------
-------------------------------SSSSSSSS-----------------------------------------
---SSS--------------------------S-----------------------------------------------
------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS-------------S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------
-----------------------------S---------------S----------------------------------
--------------------------------------------------------S--------SSS----S--SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_35
---------------GAAACACCAGGCTTTGCTGG---------------------------------------------
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>reverse_2033
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--------------------------------CTGCATCGATCTGAACACTGG---------------------------
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