>input_sequence_63844
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-------------------ATGCTAGCTCACCCGGGCGGGGTCGGGGTGGTCCGGGCTTCGGTGGCCAGGGAGCCCCTCT
TCACCTTCGGCGTCATCGCCGACGTCCAGTACGCCGACATACCGGACGGCCGCTCCTTCCTCGGCGTGCCTCGGTACTAT
CGCCACAGCATCACCGTGCTCCAGAGGGCGGTCCGCAGCTGGAACAGCCACAAGGCCGGCGTCAAGTTCTGCGTCAACTT
TGGCGACATCGTCGACGGGTTCTGCCCCAAGGACCGGTCGCTCTCCGCCGTGCAGGCCGTGGTGGCAGAGTTCGACCGGT
TCCACGGCGGCCCGGCGTACCACATGCTCGGCAACCACTGCCTGTACAACCTCCCAAGGAGCGAGCTGGTGTCCGTGCTG
CGGATGCCTGGGCGCGCCTACTACGACTTCTCGCCGTGGCCGGGGTACAGGTTCGTGGTCCTGGACGCGTACGACTTCAG
TGCCGTCGGCTGGCCGCGCGACCACCCTGTGGCGGCGGCGGCCAGGAGGTTCCTGGAGGAGAGGAACCCGAACTCGGATA
AAAACAGCCCGACCGGGCTGGCAGGGGAGGACCGGCGGTTCGTGATGTTCAACGGCGGCGTGGGCGAGGAGCAGCTGCGG
TGGCTGGACGGCGTCCTGCAGGACGCGTCGCGGCGCGGGGAGACCGTGGTGGTGTGCAGCCACCTGCCGCTCCACCCCGG
CGCGGCGTCCCCTGCGGGGCTTATGTGGAACTACGAGGAGGCGCTGGCAGTGGTGCACCGGCACGGATGCGTCGCGGCGT
GCCTCGCGGGGCACGACCACAAGGGCGGGTACGCCGTCGACGCGTGCGGCGTGCACCACCGCACCCTGGAGGCCGCGCTC
GAGTGCCCGCCAGGCACCGACGCGTTTGGCCACGTCGATGTGTTCCCCGGCAGGCTGTCGCTCGCCGGATCTGGCAGGAT
GGCGAGCACCGACATGCCGCTCGCCCTCCCTCGGCTGAGCTAG-------------------------------------
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>chr7D_1_TraesCS7D01G278000
TTCGGTGGTTGTCGGCAGAAGTCTTGCATATTTCCCTTGTGAAGCTCGTCGTCAAAGTCGGAGCTCTCGGTTATTCGCGC
GTGTGGCCTTCTGTTGGCATGTGCCATCATGGCTTCTGTGC----------GGGTTGGCTTCTATGATGAAGCTCTTTGG
TTAAGCCGGAGTCGCCCAATCGGAGGTAACCGATGATAACGATAATGCTTGCAACTCATCGACGGATGTCTTTTCTTCTT
TGCAGCTCATGTTCCATGTTGGTGGTCAGGTTGGCCGGTAGTGCCCATATTATGTGGGTCTGGTTGTATCGTTTTTTGCC
CGATTTTCGACAATTAACTGGACAATTCTCACTCTTTTCTTAATCAATGAAAATGG---------TGCCTTGTTTTAAGA
AAAGAAATGTTCTGAGGG-TTGGACCTTTTACATCAGACGTTCTTTTCACGAAAATCCTTAAGACTCATCGTACGCGAGC
TGTCACGACGCTGAAATTTGTA---CGTTAGTAGGCCCAACAGCTCTTCTGATTTGCCTTTTACTGTAAACCGTGTGTGA
AGCCT---------------------------------------------------------------------------
----------------------------------------ACTTTGTTTACTCCACGAGCATATTGGAGGCGGAAACTTA
AATGAAATATCGATGAGCCACCTACTATATCCT-----------------------------------------------
----------------------------------ATTGGCAGCCGGCATACGGTTGGCTAGTAGCTCTCAAAATTTAACC
GGCGATATGAATATGATTCCTTGGACAAGATGGCACCACGTGTGGAGCGGACCACCGTCCACTTGCTTGTGCCACGTGAT
GATATCATCCATCTCCTCGCACCGCGCAGTCCGGTGCTCCGGAGAAGAGAAGTCGCGAGGTTCGCCGGAGAGGAGAGGAC
GAACTGCTGCCGGCGGCAACCGCCACGTCGGTAAACTGCTTATACCCAATGTGTTAACTTTACTTGAAACAAAAGCAGTT
TGCACCTAATTAAGATATCGTCTTCGTGTCCCTTTCGCCGCTGGGCAGCAATTGATTGATTGATTCCGGCGTGTTCGACG
GCGCCGGCCAGCCGCATCCATGCTAGCTCACCCGGGCGGGGTCGGGGTGGTCCGGGCTTCGGTGGCCAGGGAGCCCCTCT
TCACCTTCGGCGTCATCGCCGACGTCCAGTACGCCGACATACCGGACGGCCGCTCCTTCCTCGGCGTGCCTCGGTACTAT
CGCCACAGCATCACCGTGCTCCAGAGGGCGGTCCGCAGCTGGAACAGCCACAAGGCCGGCGTCAAGTTCTGCGTCAACTT
TGGCGACATCGTCGACGGGTTCTGCCCCAAGGACCGGTCGCTCTCCGCCGTGCAGGCCGTGGTGGCAGAGTTCGACCGGT
TCCACGGCGGCCCGGCGTACCACATGCTCGGCAACCACTGCCTGTACAACCTCCCAAGGAGCGAGCTGGTGTCCGTGCTG
CGGATGCCTGGGCGCGCCTACTACGACTTCTCGCCGTGGCCGGGGTACAGGTTCGTGGTCCTGGACGCGTACGACTTCAG
TGCCGTCGGCTGGCCGCGCGACCACCCTGTGGCGGCGGCGGCCAGGAGGTTCCTGGAGGAGAGGAACCCGAACTCGGATA
AAAACAGCCCGACCGGGCTGGCAGGGGAGGACCGGCGGTTCGTGATGTTCAACGGCGGCGTGGGCGAGGAGCAGCTGCGG
TGGCTGGACGGCGTCCTGCAGGACGCGTCGCGGCGCGGGGAGACCGTGGTGGTGTGCAGCCACCTGCCGCTCCACCCCGG
CGCGGCGTCCCCTGCGGGGCTTATGTGGAACTACGAGGAGGCGCTGGCAGTGGTGCACCGGCACGGATGCGTCGCGGCGT
GCCTCGCGGGGCACGACCACAAGGGCGGGTACGCCGTCGACGCGTGCGGCGTGCACCACCGCACCCTGGAGGCCGCGCTC
GAGTGCCCGCCAGGCACCGACGCGTTTGGCCACGTCGATGTGTTCCCCGGCAGGCTGTCGCTCGCCGGATCTGGCAGGAT
GGCGAGCACCGACATGCCGCTCGCCCTCCCTCGGCTGAGCTAGCT------------AGCTGCTGCTGCTTCAGTA-CCA
TGCGAGCAGCTGATGCTTGCTCCACTCGATCCACGGGTTCCCCGAGTGTACTGTGTAATAGCCATTAGCTCGCAACAGTT
ACTTAGCTGTCTGTGTAACGATTCACCATCTCGAACTGATCCGACTCAATTTGGAAATGTTGCGTAGAATTTGCAAATGT
CATGTGGAAATGTGTCCTAACTTGTAAATTGCCGCTCTCTCTCACTGGAGCAGCGGACAATGCTACACGTACAAAAAT--
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--TAACGCGAGAGTTCTAGGAGTAGATAAAAGCTGATGTGAAGAAGATTAATTGGACCAGGATTAAAAGCTGGGGCTCAC
CTCCGTTGAAATTCATGGGGCCAAGAGGATTTGTTTAGAAGGTCATGTAGGTCTTCGTGGTCTATTCGTAGATGTAGCAT
TATTCATGGAGCACCAGTGTTTCTCTTTTTGCTTCTGCTTTGATACATCCTC----------TATAAACATATCAAAACA
TATCAATGGTGGAGGTCCATCCATTATTGATTAGCATTATGACACCATTAATCCCCTTCCCTTGTCACATCTCGACCTCG
GGGCAATGCTCGGTGTGTCAGACCCATGCGGAGGATGTGGTTTAGGCTCTATTTAAATGTGCCCGAGCAAAAGAAGTATG
ACGAGTCCTTGGGCTGCATGAAATCATAACACTTCCATGCACGCCGCAGCAATTCAGAGCTAAGATTTTGGAGGTTCTTC
TATGCCATTTGGCCAACT-AAAATAGTACATGGACGTGGTTCAAATTTCGGAGATGATCATGGCCACTAGCTGGTGCCTT
TGGTGGTAGAGAAGGCAGATTGCTAAGAATGAGGAGGTGCAACAACAAGTACGAACAAGACCGACAATTCGAGCACTAGC
ATAAAATTATGTGCAATCAGTTGGCAAACCTTCAGTGCTCCCATGGAGTAACCAATGGAGGAGGCCATTGAATGGTCAGC
TGGTTCTGAATGCGGATGCATCTTTTTCTGA
>chr7B_11
----------GTCGGCAGAAGTCTTGTGTATTTCCCTTGCGAAGCTCGTCATAAAAGTCGAAGATGTCGGTTGTTCGTGC
GTGTGGCCTTCTGTTGGCATGTGCCATCATGATTTCTGTGCAGCTGTTTGCGGGTTGGCGTCTATGATGGAGCTCTGTGG
GTAAGTCGGAGTTGCTCATTCGGAGGTAACCGGAGATGACGATAACGCTTGCAACTTCTGGAC-GATGTCTTTTCTTATT
TGCAACTCATGATCCATATTGGTGGTCAGGTTGGCCGGTGATGCCCATATTACGTGGGTTGGGTTTTGTCGGTTTTAACC
TGGTTTTCGTTAATTAACCGAACAATTCTCACTCTTTTCTTAGTCAATCAAAATGGTAATTCTTTTGCCTTGTTTTAAGA
AAAGAAATGTTCCGAGGACTTGGACCTTTTACATCAGACGTTCTTTTCTCGAAAATCCTTGAGACTCATCGTACGCGAGC
TGTCACGACGCTGAAATTTGT---ACGTTAGTAGACCCAACAGCTCTTCTGATTTGCCTTTTACTGTAAACCGTGTGTGA
GGCCT---------------------------------------------------------------------------
----------------------------------------ACTTTGTTTACTCCACGAGCATATTGGAGGCGTAAACTTA
AATGAAATATCGATTAGCCACCTACTATATCCT-----------------------------------------------
---------------------------------TATTGGCAGCCGGGATACGGTTGGCTC-TAGCTCTCAAAATTTAACT
GGCGATATGAATATGATTCCTTGGACAAGATGGCGCCACGTGTGGAGCGGACCACCGTCCACTTGCTTGTGCCACGTGAT
GATATCATCCATGGCCTCCCACCGCGCAGTCCGGTGCTCCGGAGAAGAGAAGATGCGAGGTTCGCCGGAGAGGAGAGGAC
GAACTGCTGCCGGCGGCAACCGCCACGCCGGTAAACTGCTTATACTTGATGTGTTAACTTCACTTGAAACAAAAGCAGTT
TGCACCTAATTAAGATATCGTCTTCCTGTCCCTTTCGCCGCTGGGCAGCAATTGATTGATTGATTCCGGCGTGTTCGACG
GCGCCGGCCAGCCGCATCCATGCTAGGTCACCCGGGCGGGGTCGGGGTGGTCCGGGCTTCGGTGGCCAGGGAGCCCCTCT
TCACCTTCGGCGTCATCGCCGACGTCCAGTACGCCGACATACCGGACGGCCGCTCCTTCCTCGGCGTGCCTCGGTACTAT
CGCCACAGCATCACCGTGCTCCAGAGGGCGGTCCGCAGCTGGAACAGCCACAAGGCCGGCGTCAAGTTCTGCGTCAACTT
TGGCGACATCGTCGACGGGTTCTGCCCCAAGGACCGGTCGCTCTCCGCCGTGCAGGCCGTGGTGGCAGAGTTCGACCGGT
TCCACGGCGGCCCGGCGTACCACATGCTCGGCAACCACTGCCTGTACAACCTCCCAAGGAGCGAGCTGGTGTCCGTGCTG
CGGATGCCTGGGCGCGCCTACTACGACTTCTCGCCGTGGCCGGGGTACAGGTTCGTGGTCCTGGACGCGTACGACTTCAG
TGCCGTCGGCTGGCCGCGCGACCACCCTGTGGCGGCGGCGGCCAGGAGGTTCCTGGAGGAGAGGAACCCGAACTCGGATA
AAAACAGCCCGACCGGGCTGGCGGGGGAGGACCGGCGGTTCGTGATGTTCAACGGCGGCGTGGGCGAGGAGCAGCTGCGG
TGGCTGGACGGCGTCCTGCGGGACGCGTCGCGGCGCGGGGAGACCGTGGTGGTGTGCAGCCACCTGCCGCTCCACCCCGG
CGCGGCGTCCCCCGCGGGGCTTATGTGGAACTACGAGGAGGCGCTGGCAGTGGTGCACCGGCACGGATGCGTCGCGGCGT
GCCTCGCGGGGCACGACCACAAGGGCGGGTACGCCGTGGACGCGTGCGGCGTGCACCACCGCACCCCGGAGGCCGCGCTC
GAGTGCCCGCCAGGCACCGACGCGTTTGGCCACGTCGATGTGTTCCCCGGCAGGCTGTCGCTCGCCGGATCCGGCAGGAT
GGCGAGCACCGACACGCCGCTCGCCCTCCCTCGGCTGAGCTAGCT------------AGCTGCTGCTGCTTCAGTATCCA
TGCGAGCGGCTGAAGCTTGCTCCACTCGATCCACGGGTTCCCTGGGTGTACTGTG---TAGCCATTAGCTCGCAACAGTT
A----GCTGTGTGTGTAACGATTCACCATCTCGAACTGATCCGACTCAATTTGGAAATGTTGCGTAGAATTTGCAAATGT
CATGTGGAAATGTGTCCTAACTTTTAAATTGTCGTTCTTTCTCACTGGAGCAGCGGACAATGCTACG-------------
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--------------------------TAAAAGCTGATGTGAAGAAGATTAATTGGGGCAGG-----CAGCTGGGCCCCAT
CCTGGTTGAAATTCATGGGGCCAAGAGTATTTGTTTAGAAAGTTACGTAGGTCTTCATGGTCTATTCGTAGATGTAGCAT
TATTGATGAAGCAGCAGTGTTTTTCCTTCCACTTCTGATTTGATACAACCTC----------TCT----------AAACA
TATCAATGGTGGAGGTCCATCCATTACTGATTAGCCTTATGACACCATTAGTCCCCTTCCCTTGTCACATCTCGACCTCG
GGCCAATGCTCGGTGTGTCAGACCCACGTGGAGGATGTGGCTCATGCTCTATTTAAATGTGCCCGAGCAAAAGAAGTATG
GCGAGTCCTTGAGCTGCATGAAATCATAACACTTGCACGCATGCTGCAACGATCCAGAGCTAAGATTTTGGAGCTTCTTC
TATGCGATTTGGCCAACCAAAAACAATACATGGATGTGGTTCAAATTCTGGAGATGATCATGGCCACTAGCTGGTGCCTT
TGGTGGTAGAGAAGGCATATTGCTAAGAATATGGAGGTGCAACAGCCAGTATGAACGGGACTGTCGATTCGAGCACTAGC
ATAAAATTATGTGCGATCAGTTGGCAAACC-TCAGAGCTCCCACGGAGTAACCGATGGAGGAAGCCATTGAATGGTCAGC
TGGTTCTGAATGTGGATGCATCTTTTTCTGA
>chr7A_11
----------GTCGCCAGAAGTCTTGCATATTTCCCTTGTGAAGCTTGTCATCAAAGTCGG-GCTGTCGGTTGTTCGCGC
GTGTGGCCTTCAGTTGGCATGTGCCATCATGACTTCTGTGTAACTGTTTGCGGGTTGGCGTCTATGATGAAGCTCTTTGG
GTAAGTCGGAGTCGCTCGTTCAGACATAACCGGTGATGACAATAACGCTTCCATCTTCTCGAC-GATGTCTTTTCTTCTT
TGCAA-TCATGTTTCATATTGGTGGTCAGGTTGGTCGGCGGTGCCCATATTACGTGGGTTGAGTTGTATCGATTTTACCC
CGGTTTTCGTCA--------GACAGTTCTTGCTCTTTTCTTAATCAATGAAAATGGTA---CTTTTGCCTTGTTTTAAAA
AAAGAAATGCTCCGAGGACTT-GACCATTTACATCAGACGTTCTTTTCTCGAAAATCCTTAAGACTCATCGTACGCGAGC
TGTCACGACGCTGAAATTTGTAGTACGTTAGTACGCCCAACAGCTCTTCTGATTTGCCTTTTACTCTAAACCGTGTGTGA
AGCCTACTTTGTTTGGACGAGGCTCCTCTGACGTACTGCAGGGCGCAGTTGGGCCACTGACATTGGCCCACCTGTCAGTG
GCCCAACTGCGCCCTGCAGTACGTCAGGGGAGCCGAGTCCACTTTGTTTACTCCACGAGCATACTGGAGGCGGAAACTTA
AATGAAATATGGATGAGCCACCTACTACTCCTTCCGTTTCGAATTACTTGTCCTAGATTATCCGTATCTAAACAATTCTA
AGACAAGTAATTCGGAACGGAGGGAATATATCCTATTGGCAGCGGGGATACGGTTGGCCAGTAGCTCTCAAAATTTAACT
GGCGATATGAATATGATTCCTTGGACAAGATGGCGCCACGTGTGGAGCGGACCACCGTCCACTTGCTTGTGCCACGTGAT
GATATCATCCATCGCCTCCCACCGCGCAGTCCGGTGCTCTGGAGAAGAGAAGGCGCGAGGTTCGCCGGAGAGGAGAGGAC
GAACTGCTGCCGGCGGCAACCGCCACGTCGGTAAACTGCTTATACCTAATGTGTTAACTTCACTTGAAACAAAAGCAGTT
TGCAGCTAATTAAGATATCGTCTTCCTGTCCCTTTCGCCGCTGGGCAGCAATTGATTGATTGATTCCGGCGTGTTCGACG
GCGCCGGCCAGCCGCATCCATGCTGGCTCACCCGGGCGGGGTCGGGGTGGTCCGAGCTTCGGTGGCCAGGGAGCCCCTCT
TCACCTTCGGCGTCATCGCCGACGTCCAGTACGCCGACATACCGGACGGCCGCTCCTTCCTCGGCGTGCCTCGGTACTAT
CGCCACAGCATCACCGTGCTCCAGAGGGCGGTCCGCAGCTGGAACAGCCACAAGGCCGGCGTCAAGTTCTGCGTCAACTT
CGGCGACATCGTCGACGGGTTCTGCCCCAAGGACCGGTCGCTTTCAGCCGTGCAGGCCGTCGTGGCAGAGTTCGACCGGT
TCCACGGCGGCCCGGCGTACCACATGCTCGGCAACCACTGCCTGTACAACCTCCCAAGGAGCGAGCTGGTGTCCGTGCTG
CGGATGCCTGGGCGCGCCTACTACGACTTCTCGCCGTGGCCGGGGTACAGGTTCGTGGTCCTGGACGCGTACGACTTCAG
TGCCGTCGGCTGGCCGCGCGACCACCCTGTGGCGGCGGCGGCCAGGAGGTTCCTGGAGGAGAGGAACCCGAACTCGGATA
AAAACAGCCCGACCGGGCTGGCAGGGGAGGACCGGCGGTTCGTGATGTTCAACGGCGGCGTGGGCGAGGAGCAGCTTCGG
TGGCTGGACGGCGTCCTGCGGGACGCGTCGCGGCGCGGGGAGACCGTGGTGGTGTGCAGCCACCTGCCGCTCCACCCCGG
TGCGGCGTCCCCCGCGGGGCTTATGTGGAACTACGAGGAGGCGCTGGCAGTGGTGCACCGGCACGGATGCGTCGCGGCGT
GCCTCGCGGGGCACGACCACAAGGGCGGGTACGCCGTGGACGCGTGCGGCGTGCACCACCGCACCCTGGAGGCCGCGCTC
GAGTGCCCGCCAGGCACCGACGCGTTTGGCCACGTCGATGTGTTCCCCGGCAGGCTGTCGCTCGCCGGATCCGGCAGGAT
GGCGAGCACCGACATGCTGCTCACCCTCCCTCGGCTGAGCTAGCCAGCAGCAGCAGCAGCTGCTGCTGCTTCAGTATTCA
TGCGAGCAGCTGATGCTTGCTCCACTCGATCCACGGGTTCGGC---TGTACTGTG---TAGCCATTAGCTCGCAACAGTT
ACTTAGTTGTATGTGTAACGATTCACCATCTCGAACTGATTCGACTCAAATTGGAAATGGTGCGTAGAATTTGCAAATGT
CATTTGGAAATGTGTTCTAACTTGTAAATTGCCGCTCTTTCTCACTGGAGCAGCGGACAATGCTACACGTACCAAAAGTA
CTCCCTCCGTTTTTTTGTTTGCATATATAAAATTTGGTCAAAGTCAAACTTTGTGACTAGCTTTGTATGAAAATATATCA
ACATTCACACTATGAAATCAATATTATAAATGCATGATGAAATTAATTTTCATAACATATAACTTTTGTTTTGTGGATGT
TGATATTGTTTCTATAGTCAAACTTTACAAAGTTTGACTTTGACCCAAATCTTACATACGAACAAAAAAGAAACGGAGAA
AGTAATGCAAGAGTTCTACT------TAAAAGCTGATGTGAAGAAGATTAATTGGGTCAGGATTAGCAGCTGAGGCCCAC
CCCCGTTGAAATTCATGGGGCCAATAGGATTTGTTTAGAAGGTTACGTAGGTCTTCGTGGTCTATTCGTAGATGTAGCAT
TATTGATAGAGCGGCAGTGTTTTTCCTTTCACTTCTGCTTTGATACACCCTTTCTAAATATATCA----------AAACA
TATCAACGGTGGAGGTCCATCCATTATTGATTAGCATTATGCCACCATTAATCCCCTTCCCTTGTCACATCTCGACCTCG
GGCTAATGCTTGGTGTGTCACACCCATGCGAAGGATGTGGCTCAGGCTCTATTTAAATGTGCCCAAGCAAAATAAGTATG
ACAATTCCTTGAGCGGCAT-------------------------------------------------------------
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>SNPs
SSSSSSSSSS----------------------------------------S--------------S------S-------
-------------------------------S---------------------------S--------------------
S----S---------S--S-------------S----S-------S----------SS-----S----------------
----S------------S---------------------S------------S------SS----------S----SS--
--S------S--------S-------------------------------------------------------------
------------S----S------------------------------S-------------------------------
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----------------------------------------------S--------------------------------S
----------------------------------S---------------------------------------------
-------------S----S---------------------------------S---------------------------
----------------------------------------------S-------------S-------------------
-------------------------S------------------------------------------------------
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-------------------S------------------------------------------------------------
------------S-------------------------------------------------------------------
-------------------------------------S------------------------------------------
-----------------------------------------------------------------------S--------
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--------------------------------------------S----------SSS----------------------
----------S---------------------------------------------------------------------
--------------------------------------S---------------------------------S----S--
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-----S--S---------SSSSSSSS-----------------------------SS--------SS---------S---
-S-----------------------------------------S-S----------------------------------
----S--------S--------S--S---SS----------------S---------------S-SSSSSSSSSS-----
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--S-------------------------------------S-S-------------------------------------
-----------S----------------------S--S---S--S---S-S--S-------------------S------
-----S-----------S-----S-S--------S------------SS-------------------------------
-----------------S------------SS------------S-S----S----SS---S-S-S--------------
--------------S---------------S----S-------S---------S--------S-----------------
------------S------------------
>forward_847
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---------------------------ATATCCTATTGGCAGCCGGC---------------------------------
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>reverse_3043
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--GCAATGCTCGGTGTGTCAGA----------------------------------------------------------
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