>input_sequence_63827
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------ATGGCGCTGGCCACCCCGACAGCCGTGGTGCTGGAGCTGATGACCATGGGGC
AACAGTCCGCGGCGCACCTCGGGGAGCTGCTCCGAGCGGCGTCCCCGCCCGTGCGGGCCGAGCACCAGGCGCTCGCCGCG
GAGATCATCCGCTGCTGCGACCGGGTGATCGCCGCGGTGAGCGCGGGCGCCACCGATAAAAAGAGGAAGATGACGGACCC
TGGCGCCACATCCTGCCATCTTCCCTCAGCCGCCATGCCGTCCAAAAGAAGGTGCG-TAGTTCAAATGAA----------
---------------------------TGATTTCCTCCACCCTTTGCACGAGCATGAGGGTTTGACAGG-----TTGCCG
TCGATATCGCAGGGTGCGTGCTGCGGAGGCGCACAGAGAGGTCCAGGCGCACACGACGGCGGACGGGTTCGTGTGGAGGA
AGTACGGGCAAAAGGACATCAACGGAAGCAACCACCCGAGGTTCGTACAGTAGAA------AGAAATGCCCCTAATGGTC
CGGACAAACGGCAAGCTTGTTGAT----CAGCGCAGAGCCTGACGCTATT-TTGTTGCATGCAGGCTCTACTACCGCTGC
GCGTTCAGAGGCGAGGGCTGCGCCGCGACTCGGCGGGTGCAGCGGTCGCCGGAGGAGCCCGCGGCGTTCGTGATCGCCTA
CTACGGCGAGCACACCTGCGGAGCCGGCTTCGGCGACACGTGCCAGCAAGGGGCGG------TGCCTCCTACCGTTGTCG
ACTCCGGCTCAAACGCTCGTGGAACCGTCGGTGCCATCGACTGGAACAGGGGCTCGCTTCTGCTGCCGTCGCTCCCAGCC
GAGCAGG------GCGCA---CGCCATCACGGCGAGGCGCCTGGTGACACGTCGCGGGGATGGTTGTCGCCGTCGTCCTC
---GTCCTACTCGTCGGAGGTGGAACTTGGTGCTTCTCCTGTCGGGGAATTTCTCGATGGCAGCTTCGACTGGGAGTGGG
AGACCGTTGTCAACTCCCTCCGTTTCGGCGATCTGCTTCAGTAA------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>chr3D_1_TraesCS3D01G337500
CGCGCAGGCCAGTTCGCGATGGCGGAAGCTCCAAACCGGCACGTGGTTTAGCAA----CTGCTCCAAGCCAGCTCGCCGA
GGAGTGATGACTTGCTCTAGGCCGGCACGCGGGGGAGCACGGCGACACAAACAACATTGCTATTGTGGACGAGGTCGTGT
CGTACCGCTCCTCCCGTGCCTGCGGACGTGCCATCCGCCGTCAACATTTGCGGAACCGTGCCCTGCCGGCTTTGCGGAGA
TCGACGAGGCGGCGGCCAGCACGTCTGCTCCCGCCACCATCATCG-AAGAAAAGTAGAACAGGGGAGGCCGCCGCTTGGG
TCCCATGAATGCCACTGCCGAGGCGTCGCCGGCGTACACAACCGGAGGAATATGCTTCAGCTAGTGGGGAAGGGTGCCCT
GCAGTTGAGGCATATTCCTTCGGTGCCACTCCGATGAGCGCCGCTGCCGAACATGGGGAAGCGGAGGCCCTTTGCGCTGA
AGCATATACCTCTGGGGCTCATGACAGT---------------CCGGACATGGGAAAAC---------------------
-----------------------------------AATGGATATCCGCCGGCGCCGATCGTAGACTAGTTTTACCTTA--
--------------ATCCGGTTTGGATGAAGTTCGTCCGATTTG-TTAAACAGTTTTTTAAATGTACGCGGGTAGCGTTG
GATGTCCGGCTCCGCATCTATGTTCGCGGACTGATCCCGTCGGCTGATGAGTATGGGAGGAAATTTGGGGGTGAGTGCTA
-GAGATGCCCTTATCTCTTGG--CCTCACTTTCTCTTCGATCGGCTGCAAAGGGAAAG----GAAGGGTTGAGCTCCGAG
AGTGGA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------CTTAGCTGTCGCGTAGG---------------TCGCTCGGCCGCCTTCCATG-C
ACCTTCCCCGTTGGTTCCCTCGTCCTAGGTTTCTGGTATA-AAGCCGACGATCCGGCA-CGACCCGCCG-ATTCACTCGC
A--CTCACAAGCTCAGACACCCAAAAGCCAAAAAAAGTTGGTG---CACGTACTGTCCATTTCTAGTGCCAAGTTCGAGC
TAGCACAG----CAGAGAGACTCTCGCCATGGCGCTGGCCACCCCGACAGCCGTGGTGCTGGAGCTGATGACCATGGGGC
AACAGTCCGCGGCGCACCTCGGGGAGCTGCTCCGAGCGGCGTCCCCGCCCGTGCGGGCCGAGCACCAGGCGCTCGCCGCG
GAGATCATCCGCTGCTGCGACCGGGTGATCGCCGCGGTGAGCGCGGGCGCCACCGATAAAAAGAGGAAGATGACGGACCC
TGGCGCCACATCCTGCCATCTTCCCTCAGCCGCCATGCCGTCCAAAAGAAGGTGCG-TAGTTCAAATGAA----------
---------------------------TGATTTCCTCCACCCTTTGCACGAGCATGAGGGTTTGACAGG-----TTGCCG
TCGATATCGCAGGGTGCGTGCTGCGGAGGCGCACAGAGAGGTCCAGGCGCACACGACGGCGGACGGGTTCGTGTGGAGGA
AGTACGGGCAAAAGGACATCAACGGAAGCAACCACCCGAGGTTCGTACAGTAGAA------AGAAATGCCCCTAATGGTC
CGGACAAACGGCAAGCTTGTTGAT----CAGCGCAGAGCCTGACGCTATT-TTGTTGCATGCAGGCTCTACTACCGCTGC
GCGTTCAGAGGCGAGGGCTGCGCCGCGACTCGGCGGGTGCAGCGGTCGCCGGAGGAGCCCGCGGCGTTCGTGATCGCCTA
CTACGGCGAGCACACCTGCGGAGCCGGCTTCGGCGACACGTGCCAGCAAGGGGCGG------TGCCTCCTACCGTTGTCG
ACTCCGGCTCAAACGCTCGTGGAACCGTCGGTGCCATCGACTGGAACAGGGGCTCGCTTCTGCTGCCGTCGCTCCCAGCC
GAGCAGG------GCGCA---CGCCATCACGGCGAGGCGCCTGGTGACACGTCGCGGGGATGGTTGTCGCCGTCGTCCTC
---GTCCTACTCGTCGGAGGTGGAACTTGGTGCTTCTCCTGTCGGGGAATTTCTCGATGGCAGCTTCGACTGGGAGTGGG
AGACCGTTGTCAACTCCCTCCGTTTCGGCGATCTGCTTCAGTAAAGCTTAGTAGATGT-CTGCCTCAGCT----TGCGAC
ACAACCT---CACTATTTAGTGGATAGATCCGGAGTATATTTGTGTTCGGACATGTACATATCACCGTGTACCTA--AGC
ATGCTATGTCGCCAGAGGGGGCTTGTCGGGAGCATGATACATAAGACAGGTCGATGAGGTCTTTTGAGGATCCGAAATGT
CACATGTCCGGGAGGGACTCTGTCAGGGCACGAGGCGGTTATAGGCTACCCAGGTCGACCCGATCTTCCTAGGGCCTTGA
GATTCGATATCATCAAACACGAAGAACAACGAAGAACGAGGAAGTCCTTTAAAAAACGAAGAATGAGAAAGAAGAAAACA
AGATAGATAAAAATAAAGGTAAAAATGATAAATTGATTTGTCAATTATGTGGTGTTTAATTGGTCGTCATCTCTCATCTA
TGTATGAGATAGATGGACTTTTCGTAT-AAGAAAAAGACTCAAAAACATGTTCAACAAGTCAAAACCTAGACTAACTCGG
ACAGAAAATCTACACATAAATCGGACATATCGGACATGTTGGGGTGAAATAGTTGAAACAGAGAATCCACTAAA------
------GTCGGACATTTAAGTCGGAATGTCCAACTTGACTTTACATT---TGTCTCTGACCTTGCATCGGTTTTGAGGTT
GTATGCCACTTTGGATTGACATAATACAAAAAGCAAAGTTGTTCGCTTCGACAATATCAAGAATTTTCAT-TTGAGGACT
TTTGTGTTGAG---------TAAATAAGTAACTTTTTGATTAATTTAATGCAGGAAATAATTATGGATATGGCATTGACA
GTATTAACGACCTACTAATTGCGATCTAAATAAGCACGTACTACGCATATAGTAGAAGCATCTACGCACATAGCTAGTCC
TGTTAAGACAGAAAAAACAGGAACGGGATAATCATGTTATACCCTTCAGTTGGCCAGTTGGCCGTAGCAGCAGCAGTGGC
GGCGGCCTCCTTCTGGTCAGCGGAAGCCTTCTCGGCGGCG
>chr3A_1
CGTGCAGGCCAGCTCGCGATGGCGGAAGCTCCAAAGCGGCACGTGGTTTAGCAA----CTGCTCCAAGCCAGCTCGCCGA
GGAGTGGTGACTTGCTCTAGGCCGGCACGCGGGGGAGCACGGCGACACAGACAACATTGCTGTTGTGGACGAGGTCGTGT
CATACTGCTCCTCCA-TGCCCGCGGACGTGCCATCCGCCATCAACATTTGCGGAACAGTGCCCTGCCTGCTTTGCGAAGA
TCGACGAGGCGGCGGCCAGCACGTCCGCTCCCGCCGCCATCATCGGAAAAAAAGTAGAACAGGAGAGGCCACCGCTTGTG
TCCCATGAATGTCACTACCGGGGCGTCGCCGGCGTACACAACTGGAGGAATATGCTTCAACTAGTGGGGAAGGGTGCCCT
GCAGCTGAAGCATATTCCTTCGGTGCCACTCCGATGAGCGCCGCTGCCGAACATTGGGAAGCGGAGGCCCTTTGCGCTGA
AGCACTTATCTTTGGGGCTCATGACAGT---------------CCGGACATGGGGAAAACAATAGAGATCTGCCGTGACC
GACCGTAGACTAGTCAAGGGTATCCTTGTCGTGGGAATAGATATCCGCCGGCGCCGGCCGTAGACTAGTTTTACCTTA--
--------------ATCCAGTTTGAATGAAGTTCATGCGATTTGTTTAAACAGTTTTTTAAATGTACGCGGATAGTGTTA
GATGTCCGGCTCTGCTTCTACGTTCGCGGACCGGTCCCGTCGGCTGATGAATATTGGAGGAAATTTTGGGGGTGAGTGTT
GGAGATGCCCTTATCTCTTGG--CCTCACTTTCTCTTCGATCGGCTGCAAAGGGAAAG----GAAGGGTTGAGCTCCGAG
AGTGGA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------CTTAGCTGTCGCGTAGG---------------TCGCTCGGCCGCCTTCCATG-C
CCCTTCCCCGTTGGTTCCCTCGTCCTAGGTTTCTGGTATA-AAGC--ACGATCCGGCA-CGACCCGCTG-ATTCATTCGC
A--CTCACAAGCTCAGACACCCAAAAGCCAAAAAAAGTTGGTG---CACGTACTGTCCTTTTCTAGTGCGAAGTTCGAGC
TAGCAGAG----CAGAGAGACTCTCGCCATGGCGCTGGCCACCCCGACAGCCGTGGTGCTGGAGCTGATGACCATGGGGC
AACAGTCCGCGGCGCACCTCGGGGAGCTGCTCCGAGCAGCGTCCCCGCCCGTGCGGGCCGAGCACCAGGCGCTCGCCGCG
GAGATCCTCCGCTGCAGCGACCGGGTGATCGCCGCGGTGAGCGCGGGCGCCACCGATAAAAAGAGGAAGATGACGGACCC
TAGCGCCACATCCTGCCATCTTCCCTCGGCCGCCATGCCGTCCAAAAGAAGGTGCGATAGTTCAAATGAA----------
---------------------------AGATTTCCTCCACCCTTTGCACGAGCATGAGGGTTTGACAGG-----TTGCCG
TCGATTTCGCAGGGTACGTGCTGCGGAGGCGCACATAGAGGTCCAGGCGCACACGACGGCGGACGGGTTCGTGTGGAGGA
AGTACGGGCAAAAGGACATCAACGGAAGCAACCACCCGAGGTACGTAC------AGTTGAAAGAAATGCCCCTAATG---
------------------GTCGAT----CAGAGCATATCCTGACGCTATT-TTGTTGCATGCAGGCTCTACTACCGCTGC
GCGTTCAGCGGCGAGGGCTGCGCCGCGACCCGGCGGGTGCAGCGGTCGCAGGAGGAGCCCGCGGCGTTCGTGATCGCCTA
CTACGGCGAGCACACCTGCGGAGCGGGCTTTGGCGACGCGTGCCAGCAAGGGGCGGCGACGGTGCCTCCTACCGTCGTCG
ACTCCGGCTCAAACGCTCGTGGAGCCGTTGGTGCCGTCGACTGGAACAGGGGCTCGCTTCTGCTGCCGTCGCTCCCAGCC
GAGCACG------GCGCA---CGCCGTCACGGCGAGGCGCCCGGTGACACGTCGCGGGGATGGTTGTCACCGTCGTCCTC
---GTCCTACTCGTCGGAGGTGGAACTTGGTGCTTCTTCTGTCGGGGAATTTCTCGATGGTAGCTTCGACTGGGAGTGGG
AGACCGTTGTCAACTCCCTCCGTTTCGGCGATCTGCTTCAGTAAAGCTTAGGAGATGT-CTGCCTCAGCT----TGCGAC
ACAACCT---CACCATTTAGTGGACAGATCCGGAGTATATTTGCGTTCCGACATGAACGTGTCACCGTGTGCCTATAACC
ATGCCATGTCGCCACAGGGAACTAGTCGGGAGCATGATACCTAAGACAAGTCGGTGGGGTCTTTTGAGCATCCAAAACGT
CACATATGCTGGGAGGG-------ACGGCACGAGACGGTTATGGGCTATCCAGGTCGACCCGATCGTCCTAGGGCCTTGA
GATTCGCTATAAGTGAACATGG----------AGAACGAGGAAGTTCTTTAAAAAACGAAGAACGGGAAAAAAGAAAATA
AGATAGATAAAAGTGAAGGTAAAAATGATAAATTTATTTGTCAATTATGTGGTGTTTAATTGGTCGTGGTCTCTCATTTA
TATATGTGACAGATGGACTTTCCGTACAAAGAAAAAGACTCAAAAACCTGTTCAACAGGTCAAAACCTAGACTAACTCGG
ACAGAAAATCCGCAAAGAAATA---------GGACATGTTGGGATGAAATAGTTGAAACAGAGAATCCACTAAAGTCGGA
CATTGGGTCGGACATTTAAGTCGGAATTTCCAACTTGACTTTTCAATTTCTGTCTCTGACCATGCATCGGTTTTGAGGTT
GTATGCCACTTTGGATTGAGATAATACAAAAGGCAAAGTTGTTCGCTTCGATAATATCAAGAATTTTCATGTTGAGGACT
TTTGTGTTGAGAAAATAGAGTAAATAGGTAATTTTTTGATTAATTTAAT-CAAAAAATAATCGTGATTATGGCA-TGAAA
GTATTAACGACATACTGATTGCGATCTAAATAAGCGCTTACTACGCATATAGTAGAAACATCTATGCACATAGAATGACA
T---------------ACTGGAGCGGGATAATCATGCTATACCCTCTAGTTGGCCAGTTGGCCGTAGCAGCGGCAGTGGC
GACAGCCTCCTTCTGGTGAGCGGCAGCCTTCTCGGCGGCG
>chr3B_3
--CGCAGGCCAGCTCGCGATGGTGGAAGCTCAAAACCGGCGCGTGGTTTAGCAATTCGCTGCTCCAAGCCAGCTCGCCAA
GGAGTGGCAAGTTGCTCTAGGCTGACATGCGGGGGAGCATGGCGACATAGACATCGTGGCTATCGTGGATGAGGCCGTGC
CATACGGCTCCTCCCGTGCCTGCGGACGCACCATCCGCCATCAACATTTGCGGAAACGTGCCTTGCCGGCTTCACGGAGA
CCGACGAGGGGGCGGCCAGCACGTCCGCTCCCGCCGCCATCATT-GAAGAGAAGTAGAACAACGGAGGCTGCGGCTTGGG
T-CCATGAAGGCCACTGCCGAGGTGTCGCCGGCGTACATAACCTGAGGACACCCTTC-------------------CCCT
CCAACCGAAGCATATTCCTCCGGTGCCACTCCGATGAATGCCGCTGCCGAACATGGGGAAGCGGAGGCCCTTTGCGCTGA
AACATATACCTATGGGGCTCACGACAGTCCAAGGAGTGGGCTACCGGACATGGAGAAAATAATAGAGATCTGCCGTGGCC
GACCGTAGACTAGTCAAGGATATCTGCGTCGTGGGAATGGATATCTGCCGGCGCGGGCCGTATACTAGTTATACCTTAGT
CCTGTATGAATATCATCCGGTTTGAATGAAGTTTGTCCAATTTGTTTAAATAGTTTTTTAAATGTACCCGAGTAGCGTTG
GATGTCCGGCTCCGCATCCGTATTCGCGGACTGGTCCCGTCCGCTGATGAATATAGGAGGAAG-TTTGGGGGTTAGTGTT
GGAGATGCCCTTATCTCTTGG--CTTGACTTTCTCTTTGATCGGCTGCAAAGGGAAAG----GAAGGGTTGAGTTCCGAG
AATGGACTTAGGCTGGCCATAGTGGGGGTAACATAACCAGTATCATGTACTTGGAACTAGTAAACATGCTTTTGTGGCAG
GTAATTAAAAAATATGATCATGTATGATACCACTCTATGATACTATGCACTATTGAGATAGTATCATACACTAGTATCAT
ATATATGACACTAGTATATGATACTCCTTAGCTGTCGCGTAGG---------------TCGCTCGGCCCCCTTCCATG-C
AGCTTCCCCGTTGGTTCCCTCGTCCTAGGTTTCTGGTATA-AAGCCGACGATCCGGCA-CGACCCGCCG-ATTCATTCGC
A--CTCACAAGCTC-GACACCGAAAAGCCAAAAGAAGTTGGTG---CACGTACTGTCCAGTTCTAGTGCGAAGTTCGATC
TAGCACAG----CAGAG----TCTCACCATGGCTCTGGCCACCCCGACCGCCGTGGTGCTGCAGCTGATGACCATGGGGC
AACAGTCCGCGGCGCACCTCGGGGAGCTGCTCCGAGCGGCTTCCCCGCCGGTGCGGGCGGAGCACCAGGCGCTCGCCACG
GAGATCCTCCGCTGCTGCGACCGGGTGATCGCCACGGTGAGCGCGGGCGCCACCGATAAAAAGAGGAAGATGACGGACCC
TGGCGCCACATTCTGCCATCTTCCCGCGGCCGCCATGCCGTCCAAAAGAAGGTGCGGTAGTTCAAATGAA----------
---------------------------AGAATTCCTCCACCCTTTGCATGAGCATGAGTGTTTGATAGG-----TTGCCA
TCGATTTCGCAGGGTGCGTGCCGCGGAGGCGCATAGAGAGGTCCAGACCGACACGACGGCGGACGGGTTCTTGTGGAGGA
AGTACGGGCAAAAGGACATCAACGGAAGCAACCACCCGAGGTACATACAGTAGAA------AGAAATGCCCCTAATGGTC
CGGACAAACGGCAAGCTTGTTGAT----CAGAGCACAGCCTGACGCTATT-TTGTTGCATGCAGGCTCTACTACCGCTGC
GCGTTCAGAGGCGAGGGCTGCGCCGCGACTCGGCGGGTGCAGCGGTCGCAGGAGGAGCCCGCGGCATTCGTCATCGCCTA
CTACGGCGAGCACACCTGCGGAGCCGGCTTCGGCGACGCGTGCCAGCAAGGGGCGGCGCCGGTTCCTCCTACCGTCGTCG
ACTCCGGCTCAAACGCTCGTGGAGCCGTTGGTGACGTGGACTGGAACAGGGGCTCGCTTCTGCTGCCGTCGCTCCCAGCC
GAGCACG------GCGCA---CGCCGTCGCGGCGAGGCGCCCAGTGACACCTCGCGGCGATTGTTGTCGCCGTCGTCCTC
---GTCCTACTCGTCGGAGGTGGAACTTGGTGCTTCTCCTGTCGGGGAATTTCTCGATGGCAGCTTCGACTGGGAGTGGG
AGACCGTTGTCAACTCGCTCCGTTTCGGCGATCTGCTTCAGTAAAGCTTAGTAGATGT-CTGCCTCAGCT----TGCGAC
ACAACCT---CACTATTTAGTGGACAGATTCGGAGTATATTTGTGTTCGGACATGTACATATCACCGTGTACCTATAAGC
ATGCCATGTCACAGGGGATTGTCCTG-------------------------CGGTGAGGCCTTTTGAGGATCCAAAACGT
CACATGCCCAGGACGGA------CACGGCACAAGACGGTTATAGACTACTCAGGTCGACCCGATCTTCGTAGGGCCTTGA
GATTCGATATCATCTAACATGA----------AGAACAACG----------AAGAACGAAAAAGTCTTTAAAAGAAACAA
AGAA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>chr3A_708
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-GAGTTGGCCTTATCGCTTGGCTCTTGACTTCCTCTTGGATCGGCTGTAAAGGGAAAGAGTGGA--GGCTGGGCTCCCGG
AGTGGA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------CTTCAAAAGTTGTCGCGTCGCTGAGCTCAGCT-----TCGACCGCTTCCTTG-C
AGCTTCCCCGCTGGTTCCCCTGTCCTAGGTTTCCTATAAATTTGCCGACGATATGGCA-AGACCCGCCGAATTCATTCGC
A--CTCACAAGCTC-GACACCCAAAAGCCAAAAAAAGTTGGTGCACCACGTACTGTCCAGTTCTAGTGCCAGGTTCGAGC
TAGCAGAG----CAGAGAGACTCACGCCATGGCGCTGGCCACCCCGACAGCCGTGGTGCTGGAGCTGATGACGATGGGGC
AGCAGTCCGCGGCGCACCTCAGGGAGCTTCTCCGGGCGGCGTCCCCGCCGGTGCAGGCGGAGCACCAGGCGCTCGCCGCG
GAGATCCTCCGCTGCTGCGACCGGGTGATCGCCGCGGTGAGCGCGGGCGCCACCGATAAAAAGAGGAAGGCGACGGACCC
TGGCGCCACATCCTGCCATCTTCCCCTCGCCATGATGCCGTCCAAAAGAAGGTACGAGACTTCGATCGCTACTCGCACCG
GGAA-------TGAACGAAGAATTTTCTGAATTCATCCGCCCTTGCACGAGGCACGAGTGTTTGACTGACAGGTTTGCCG
TCGATTTCGCAGGGTGCGTGGGGCGGAGGCGCACAGAGAGGTCCATGCCGACACGACGGCGGACGGGTTCGTGTGGAGGA
AGTACGGGCAAAAGGACATCAACGGAAGCAACCACCCGAGGTACGGAC------A------AGAAATGCCCCTGGTGGTC
CGGACAAACGGCAAGCTTGTCGATCAGACAGAGCAGAGCCTGACGCTATTGTTGTTGCATGCAGGCTCTACTACCGCTGC
GCGCTCAGCGGCGAGGGCTGCGCCGCGACCCGGCGGGTGCAGCGGTCGCAGGAGGAGCCCGCGGCGTTCGTGATCGCCTA
CTACGGCGAGCACACCTGCGGAGCCGCCTTC---------TGTCAGCAAAGGGCGGAGCCACTGCCTCCTACCGTCGTCG
ACTCAGGCTCAAACGCTTGGGGAGTCTTCGGTGCCGTCGACCGGAACAGGGGCTCGCCTCTGCTGCCGTCGCTCGGAGCC
GAGCACAAGCACAGCGCCGTGCGCCGTCACGCCGAGGCGCCCGGTGACACGTCGCGGCGATGGTCGTCGCCGTCGTCCTC
CTCGTCCTACTCCTCCGAGGTGGAACTTGGTGCTTCTCCTGTCGAGGGGTTCCTCGATGGCAACTTCGACTGGGAGTGGG
AGACCGTCGTCAACTCGCTCAGCTTCGGCGATCTGCTTCACTAGAGCACAGTAGAT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>chr3D_717
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------TTGTCTCTTGGCTCTTGACTCTCTCTTGGATCGGCTGCAAAGGGAAAAAGAGGAAGGGCTGGGCTCCGGG
AGTGGA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------CTTCAAAAGTTGTCGCGTCGCTGAGCTCAGCTTCACTTCGGCCGCTTCCATGCC
AGCTTCCCCGCTGCTTCCCTTGTCCTAGGTTTCCTATAAA-TTGCCCACGATATGGCAAAGACCCGCCGAATTCATTCGC
A--CTCACAAGCTC-GACAACGAGAAGCCAAAAAAAGTTGGCGCACCACGTACTGTCCAGTTCTAGTGCAAAGTTCGAGC
TAGCAGAGAAGACAGAG----ACTCGCCATGGCGCTGGCCACCCCGACGGCCGTGGTGCTGGAGCTGATGACCATGGGGC
AGCAGTCCGCGGCGCACCTCCGGGACCTGCTCCGGGCGGCGTCCCCGCCTGTGCAAGCGGAGCACCAGGCTCTCGCCGCC
GAGATCCTCCGCTGCTGCGACCGGGTGATCGCCGCGGTGAGCGCGGGCGCCGCCGATAAAAAGAGGAAGGCAGCGGACCC
TGGCGCCACATCCTGCCATCCGCCCATGGCCGCCATGCCGTCCAAAAGAAGGTGCGAAAGTTTGATCGCTACTCGCACCG
GGAC-------GGAAGGAAGAA--TTCTGAATTCCTCCGCCCTT-------GCACGAGCGCTTGACTGACAGGTTTGCCG
TCGAATTCGCAGGGTGCGTGGCGCGGAGGCGCACAGAGAGGTCCATGCCGACACGACGGCGGACGGGTTCGTGTGGAGGA
AGTACGGGCAGAAGGACATCAACGGAAGCAACCACCCTAGGTACGGAC------A------AGAAATGCCCCTGATGGTC
CGGACAAACGGCAAGCCTGTCGATCAGACAGAGCAGAGCCTGACGCTATT-TTGTTGCATGCAGGCTCTACTACCGCTGC
GCGCTCAGCGGCGAGGGCTGCCGCGCGACCCGGCGGGTGCAGCGGTCGCAGGAGGAGCCCGCGGCGTTCGTGATCGCCTA
CTACGGCGAGCACACCTGCGGAGCCGCCTTG---------TGTCAGCAAAGGGCGGAGCCACTGCCTCCTACTGTCGTCG
ACTCCGGCTCAAACGCTTGGGGAGTCTTCGGTGCCGTCGACCGGAACAGGGGCTCGCCTCTGCTGCCGTCGCTCGGAGCC
GAGCAAG------GCGCCGTGCGCCGTCACGTCGAGGCGCCCGGTGACACGTCGCGGCGATGGTCGTCGCCGTCGTCCTC
CTCATCCTACTCCTCCGAGGTGGAACTTGGTGCTTCTCCTGTCGAGGGGTTCCTCGATGGCAACTTCGACTGGGAGTGGG
AGACCGTCGTCAACTCGCTCAGCTTCCGCGATCTGCTTCACTAGAGCACAGTAGAT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>chr3B_717
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------TTATCTCTTGGCTCTTGACTTCCTCTTGGATCGGCTGCAAAGGGAAAGAGAGGAAGGGCTGGGCTCCCGG
AGTGGA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------CTTCAAAAGTTGTCGCGTCGCTGAGCTCAGCT-----TCGGCCGCTTCCATG-C
GGCTTCCCAGCTGGTTCCCCTGTCCTAGGTTTCTAT--AAATTGCCAACGATATGGCA-CGACCCGCCG-ATTCATTCGC
ACTCTCACAAGCTC-GACACCCAAAAGCCAAAAAG-GTTGGTGCACGACGTACTGTCCAGTTCTAGTGCGAAGTTCAAGC
TAGCACAG----CAGAGAGACTCTCGCCATGGCGCTGGCCACCCCGACCGCCGTGGTGCTGGAGCTGATGACCATGGGGC
AGCAGTCCGCGGCGCACCTCGGGGACCTGCTCAGGGCGGCGTCCCCGCCGGTGCGGGCGGAGCACCAGGCCCTCGCCGCC
GAGATCCTCCGGTGCTGCGACCGGGTGATCGCCGCGGTGAGCGCGGGCGCCTCCGATAAAAAGAGGAAGATGACGGACCC
TGGCGCCACGACCTGCCATCCTCCCGCGGCCGCGATGCCATCCAAAAGAAGGTGCGAAAATTCGATCGCTACTAAGTACT
CCTACTTGCCAGGATGGAAGAA--TTCTGAATTCCTCTGCCCTTACACGAAGCACGAGCGTTTGACTGACAGGTTTGCCG
TCGATTTTGCAGGGTGCGTGGCGCGGAGGCGCACAGAGAGGTCCATGCCGACACGACGGCGGACGGGTTCGTGTGGAGGA
AGTACGGGCAAAAGGACATCAACGGAAGCAACCACCCGAGGTACGGAC------A------AGAAATGCCCCTGGTGGTC
CGGACAAACGGCAAGCTTGTCGAT----CAGAGCAGAGCCTAACGCTATT-TTGTTGCATGCAGGCTCTACTACCGCTGC
GCGTTCAGAGGCGAGGGCTGCGCTGCGACCCGGCGGGTGCAGCGGTCGCAGGAGGAGCCCGCGGCGTTCGTGATCGCCTA
CTACGGCGAGCACACCTGCGGAGCCGCCTTC---------TCTCAGCAGAGGGCGGAGCCACAGCCTCCTACTGTCGTCG
ACTCCGGCTCAAACGCTTGGGGAGTCTTCGGTGCCGTCGACCGGAACAGGGGCTCGCCTCTGATGCCGTCGCTCGCAGCC
GAGCACGAT---------GTGCGGCGTCACGGCGAGGCGCCCCGTGACACGTCGCAGCGATGGTCGTCGCCGTCGTCCTC
CTCGTCCTACTCC---GAGGTGGAACTTGGTGCTTCTCCTGTCGAGGGGTTCCTCGATGGCAACTTCGACTGGGAGTGGG
AGACCGTCGTCAACTCGCTCAGATTCGGCGATCTGCTTCACTAGAGCACAGTAGATTGCCTGCCTCAGCGAATGTGCGAC
ACGACCTGTGCACTGTTTAGTGGACAGATCTGGAGTA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>SNPs
------------S-------------------------------------------------------------------
------S------------------------------------------S------------------------------
-S---S---------------------------------S----------------------------------------
-------------------------S---------S--------------------------------------------
-----------------------------------------------------------S--------------------
----S---S-----------------------------------------------------------------------
-----------S------------------------------------------S---S---------------------
--------------------------------------------------------SS----------------------
------------------------S-------------------------------------------------------
---------------------------------S----------------S---S-----------S----SSSSSSS-S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S-------------------------------------------------------------------------
---------------------------S----------------------------------------------------
--------------------------------------------------------------------------------
-----S--------------------------------------------------------------------------
------------------------------------------S-------------------------------------
-------------------------------S------------------------------------------------
-------------------------------------------------S------------------------------
-------------------------------------S-------------------------------------S----
-----------------------S-----------S--------------------------------------------
-----S-------------------S---------------S--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S-------------------------------------------------------
----S--------------S---S----------------S-------S----S-------------------S---S--
---------S---S---SSSSSS--S--------S---------------------------------------------
--------------S----S--SSSSSSSSSS-------------S-----------------S-S----S-------S-
------------S-S-------------------S--------------------------------SS--------S--
-S----S--S-----------S----S--------------------S---------S----------------------
----------SS--S-S----SSSSSSSSSS------------S------------------------------------
---------------------------S--------------S--S---------------S------------------
-------------------S-----------S-------------------S----------------------------
--------------------------S----S-----------------S--SS-------SS--SS-------S---S-
-----------S----S------------------S-S-------------------S------S--------SSS-S-S
-SSSSSSSSSSSSSSS--S---S-------------S--------SS------------------------S--------
-S-S-------------S-----S----------------
>forward_793
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------TGGGAGGAAATTTGGGGGTG-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>reverse_2500
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------GGCTTGTCGGGAGCATGATA-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
