>input_sequence_63804
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-----------------------------------ATGGCCGCCGCCGCGACCGCCACCGCCACCGCCGTCCGCCTCCAC
GCGGCGGCCACGCGACGCGCCGCCCCGCGCCGGCCGGCGCGCCTCGCGGTGCGCGCGGACGCCGCGCGGGCGGCGACGGC
GCTGACGCAGGACGACCTCAAGCGGCTCGCGGCGGTGCGCGCGGTGGAGCAGGTGCAGAGCGGCATGGTCCTGGGGCTCG
GGACGGGGTCCACGGCCGCCTTCGCCGTCGCCGAGATCGGCGCGCTCCTCGCCAGCGGGAAGCTCTCCGGCATCGTCGGC
GTGCCCACCTCCAAGCGCACCTTCGAGCAGGC-----CGCTCGGGATCCCGCTCTCCACGCTCGACGACCACCCCGTCAT
CGACCTCGCCATCGACGGCGCCGACGAGGTCCTCTCCTCCCTCTTCCCTCGCCATTGACTTTCTCTCTGCACCGTACCAT
TTTAGTTCTGACGACTCTTACTGAGGTTCAGTTCAGATCGTCCCCTTAATTTTTCCC-AAGAACCATCTATGATTAATTA
ACCATGTTCCAATTTTTTCACC---AAGCAGGTCGACCCAGATCTTAACCTTGTCAAAGGGCGGGGTGGAGCCCTTCTCC
GAGAGAAAATGGTCGAGGCCGCGTCAGGAAAGTTTGTCGTCGTCGTCGATGAGACGAAACTCGTTACCGGCCTGGGAGGG
AGCGGCCTCGCCATGCCGGTGGAGGTTGTGCAGTTCTGCTGGAAGCACAACCAAGTAAGGCTGCAGGGTCTGTTCAACGA
AGAAGGCTGCGAGGCGAAGCTGAGACTGAATGAGGATGGCAAGCCCTATGTTACCGACAACTCGAACTACATTGTCGATT
TATACTTCAAGACGCCGATCAGGGACGCGTTGGGCGCGGGCAAGGAGATTGCGGCTTTGGAAGGAGTTGTTGAGCATGGG
CTGTTCTTGAACATGGCAACTTCAGTGATCATTGCTGGATCTGACGGCGTCAGTGTCAAAACAAAGTGA-----------
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>chr6A_1_TraesCS6A01G063200
ATAGCAATCTCAGTTCACGAATTTCGTGACACCGTGAACCAAGGTACATAGCCGCATCGATATCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGCTACCCCCTCCCACCAGCTGGAGCATGCCACGTCG
CACGAGAAGAGGCCGGGTAGATGCGCCATCCATAGAACATTGCCCCTTTCCTCCCGCTACCTCCAACTGCGACGTCCCGA
TTCACCGGCGG--------CAATATGTTGTCTCCGTCGACATTGAATGGAAGCAGAACTCGGCAGAATGTTGGATCTCGG
GAGACTCGAAGGAGGGGAGATGACGATATATCCCCATGGCTATAATCCAGTTTG--------------------------
-----------------------------TGCGGAGATTCGTGCAGAAAAA------TCCGACGGCTGTCGTCGCGTCGC
GCAGGATTCGTTCGAAGCTGACGTTCGGGCGGCGCTGACCCTCCAATTCACCACCAACCCTCCTCAACCCGTCGTTGATC
ACCAGGCACCAACCCCC-GCACATCTCCTCCGCCCTCTCTTCCTCCACCAGCTCCCCATCCATCCCCACCGAGCTC-AAG
AACTCCCACCGCCCGCCGCCACGCACCC----GGCATGGCCGCCGCCGCGACCGCCACCGCCACCGCCGTCCGCCTCCAC
GCGGCGGCCACGCGACGCGCCGCCCCGCGCCGGCCGGCGCGCCTCGCGGTGCGCGCGGACGCCGCGCGGGCGGCGACGGC
GCTGACGCAGGACGACCTCAAGCGGCTCGCGGCGGTGCGCGCGGTGGAGCAGGTGCAGAGCGGCATGGTCCTGGGGCTCG
GGACGGGGTCCACGGCCGCCTTCGCCGTCGCCGAGATCGGCGCGCTCCTCGCCAGCGGGAAGCTCTCCGGCATCGTCGGC
GTGCCCACCTCCAAGCGCACCTTCGAGCAGGC-----CGCTCGGGATCCCGCTCTCCACGCTCGACGACCACCCCGTCAT
CGACCTCGCCATCGACGGCGCCGACGAGGTCCTCTCCTCCCTCTTCCCTCGCCATTGACTTTCTCTCTGCACCGTACCAT
TTTAGTTCTGACGACTCTTACTGAGGTTCAGTTCAGATCGTCCCCTTAATTTTTCCC-AAGAACCATCTATGATTAATTA
ACCATGTTCCAATTTTTTCACC---AAGCAGGTCGACCCAGATCTTAACCTTGTCAAAGGGCGGGGTGGAGCCCTTCTCC
GAGAGAAAATGGTCGAGGCCGCGTCAGGAAAGTTTGTCGTCGTCGTCGATGAGACGAAACTCGTTACCGGCCTGGGAGGG
AGCGGCCTCGCCATGCCGGTGGAGGTTGTGCAGTTCTGCTGGAAGCACAACCAAGTAAGGCTGCAGGGTCTGTTCAACGA
AGAAGGCTGCGAGGCGAAGCTGAGACTGAATGAGGATGGCAAGCCCTATGTTACCGACAACTCGAACTACATTGTCGATT
TATACTTCAAGACGCCGATCAGGGACGCGTTGGGCGCGGGCAAGGAGATTGCGGCTTTGGAAGGAGTTGTTGAGCATGGG
CTGTTCTTGAACATGGCAACTTCAGTGATCATTGCTGGATCTGACGGCGTCAGTGTCAAAACAAAGTGAGTCTTTTTGGT
CAG----CTGTTGTCGGTGTGTTGAGTTTACGATTTTTCAGTGAATAAGCTATCTGTGTACAATGGGGAATG-ATGTTGT
TCTATAA-ATATAGTTTTTCTATGTTTCGTTGGCTCTCAC----AGTTTTTTTTGGCTTGAAAAGAGAATCGGATTGCGG
ATAAAACACCGCTTCAA---------------------------------------------------------------
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---------------------------------------TTGATTGAAGCCTTTGTGATCATGACAAGTCAATGAC--AT
TAATCTTCTTGCGCGCCAATCATCTTCTGAGAACAACACTTTGAATAAACTTGGGAGCCTGCATGTATATCAGATAATTC
AGACTACAGCTCACCAGATGCTTATTCATTACCTGACATGCTACATACTGAAGCAAGCAAAAATAGCAAAATATAACGTA
CGGCTTATAGTCGTACCTGTTAAAAGCTCC--TTTTCCCTTATTATTTTGGAGAAGAAGTGTCGGCTGCATATACATGTG
AATGTGATCTTTCAAGACAG-AAGGGCCTACACTGAAACAGTCTTATCAATATAGAAATACAAAAACATGAACAGCCGAA
TTACAACTTTATTCAGATGCCAGCAAAATCTTCAGATAACTTG------TAGTATTGAAGTACATCCAAGAACTGTTATT
TTCTCAAAATGTCAACATGGTTTTGGAGTTGTATTCACAAGACAATTTCAGGTCAGAAAATTGGAGTACTGGTCCACAAG
GGAGGTGGGTGGGGTGTTTACACAGTGGAACTGTACAGCCTGAAGCTAATAAAATGC--AAATTATTGTGGGTTTATGTT
TTCCTTCTGAGGCCTCT---CCTTATAATCCCGTTTCTTTGAAGCTCTTTGACAACCATATGGCTGTCTCTCTTGGAGAC
GCCTTCCCAGGCCCAAAAGGCTTTAGCAAGATCCCCAGCTCCT----------------------------------GAA
G-------------------------------------------TCTCTCTTGTTGGAGCAACT----------------
-GGGCACTGAACTCAAGCAAGCCCTCTAGAGCCTCAGCTCGCTGCCGGTAGGACGTCGTGTCAAACCTCTTCTGCCTCCA
ATCGGACGAAC
>chr6D_1
ATAGCAATCTCGGTTCACGAATTTCATGACACCGTGAACCAAGGTACATAGCCGCATCGATATCGGCTTCCCACCCCCTC
GCCAAGGACAACATAGCGGCCTTGCCCCCCGATTCGAGCCCGCACAACTCCAGTGCCCATCGCTAC--------------
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------------------------------------------------CCCCGGCCCACCGGCGGCAGCGCGCCACGTCG
CACGAGGAGAGGCCAGGTAGATGCGCCACCCACAGAACAT-GCTCCTTTCCTCCCACTACCTCCAGCTGCGACGCCCGTC
TGCCATGACTCACCGACAACAATTTGTTGTCTCCGTCGACATTGAATGGAAGCAGAACCCGGCAAAATATTGGATCTCGG
GAGACTCGAAGGAGGGGAGACCACAGCTATA------------AATCCAGTTTGCGTGGAATAGAAAACCAGCGAACAAT
TGCAAAAAGCCGAGTCATCGGTCATCGTGCGCCAAGATTCGTGCAAAAATAAATAAATCCGACGGCTGTCGTCGCGTCGC
GCAGGATTCGTTCGAAGCTGACGTTCGGGCGGCGCTGACCCTCCAATTCACCACCAAC---CCTCAACCCGTCGTTGATC
ACCAGGCACCAACCCCCCGCACATCTCCTCCGCCCTCTCCTTCTCCACCAGCTCCCCATCCATCCCCACCGAGCTCCAAG
AACTCCCACCACCCGTCGCCACCCTCCCACCCGGCATGGCCGCCGCCGCGACCGCCACCGCCACCGCCGTCCGCCTCCAC
GCGGCCGCCACGCGACGCGCCGCCCCGCGCCGGCCGGCGCGCCTCGCGGTGCGCGCGGACGCCGCGCGGGCGGCGACGGC
GCTGACGCAGGACGACCTGAAGAGGCTCGCGGCGGTGCGCGCGGTGGAGCAGGTGCAGAGCGGCATGGTCCTGGGGCTCG
GGACGGGGTCCACGGCCGCCTTCGCCGTCGCCGAGATCGGCGCGCTCCTCGCCAGCGGGAAGCTCTCCGGCATCGTCGGC
GTGCCCACCTCCAAGCGCACCTTCGAGCAGGCCACGTCGCTGGGGATCCCCCTCTCCACCCTCGACGACCACCCCGTCAT
CGACCTCGCCATCGACGGCGCCGACGAGGTCCTCTCCTCCCTCTTGCCTCGCCATTGACTCTCTGTCTGTACTGTACCAT
TCTACTTCTGACGGCTCTTAGCGAG-----GTTCAGATTGTCCACTTAATTTTCCCC-AAGAACCATCTATGAT----TA
ACCATGTTTCAATTTTTTTACC---AAGCAGGTCGACCCAGATCTTAACCTTGTCAAAGGCCGGGGTGGAGCCCTGCTCC
GGGAGAAGATGGTCGAGGCCGCATCAGGAAAGTTTGTCGTCGTCGTTGACGAGACGAAACTAGTCACCGGCCTAGGAGGG
AGCGGCCTTGCCATGCCAGTGGAGGTCGTGCAGTTCTGCTGGAAGCACAACCAAGTAAGGCTGCAGGATCTGTTCAACGA
AGAAGGTTGCGAGGCGAAGCTGAGACTGAATGAGGATGGCAAGCCCTATGTTACCGACAACTCGAACTACATTGTCGATT
TATACTTCAAGACGCCGATAAAGGACGCGCTGGGCGCGGGCAAAGAGATTGCTGCTTTGGAAGGAGTTGTTGAGCACGGG
TTGTTCTTGAACATGGCAACTTCAGTGATCATTGCTGGATCGGACGGCGTCAGTGTCAAAACAAAGTGAGTGTTTTGGGT
CAGCT----GTTGTTGATGTGTTGAATTTACGTTTTTTCAGTGAATAAGCTATCCGTGTAAAATGGGGAAATTATGTTGT
TCTATAA-ATATAGTTTTTCTATGTTTCGTTGGCTCTCAC----AGTTTATTTTTGGCTTGAAAGAGAATCAGATTGCGG
ATAAAACACCACTTCAA---------------------------------------------------------------
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---------------------------------------TTGATTGGAGCCCTTGTGATCATGACAACTCAATGACATAT
TAATCTTCTTGGGCACCAATC--------AGAACAGCACTTTGAATAAACTTGGGAGCCTGCATGTATATCAGATAATTC
AGAATACAGCTCACCACAAGCTTATTCATTACCTAACATGCTACAAACTCAAGCAAGCAAAAATAGCAAAATATAATGTG
CGGCTTATAGATGTACCTGTTAAAAGGTCTTTTTTTCCCTTATTATTTTGGAGAAGAAGTGTCGGCTGCATATCCATGTG
------ATCTTTCAAGCCAGGAAGGGCCAACACTGAA--AGTCTTATCAATGTAGAAATACAAGAACAAGAACAGCCGAA
TTACAACTTTATTCAGATATCAGCAAAATCTTCAGATAACTTA------TAGTATTGAAGTACATCCAAGAACTGTTCTT
TTCTCAAAATGTCAACATGGTTTTGGAGTTGTATTCACAAGACAGTTTCAGGTCAGAAAATTGGAGTACTGATCCACAAG
GGAGGTGGGTGGGGTGTTTACACAGTGGAACGGTACAGACTGAAGCTAATAAAGATGCAAAATTATTGTGGGTTTATTTT
TTCCTTTTGAGGCCTCT---CCTTATAATCCCGTTTCTTTGAAGCTCTTTGACAACCATATGGCTGTCTCTCTTGGAGAC
GCCTTCCCAGGCCCAAAAGGCTTTAGCAAGATCCCCAGCTCCT----------------------------------GAA
A-------------------------------------------TCTCTCTTGTTGGAGCAACT----------------
-GGGCACTGAACTCAAGCAAGCCCTCTAGAGCCTCAGCTCGCTGCCGGTAGGACGTTGTGTCGAATCTCTTCAGCCTCAA
ATCGGATGAAC
>chr6B_594
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---------------------------------AGAACAT-GCTCCTTTCCTCCTGCTACCTCCAGTTGCGAAGCCCCTC
CGCCATGACTCACCGACAACAATTTGTTGTCTCCGTCGACATTGAATGGAAGCAGAACCCGGCAAAATGTTGGATCTCGG
GAGACCCGAAGGAGGGGAGACGACGATATATCCCCATGGCTATAATCCAGTTTGCGCCTAATAGAAAGCGAGAGAGCAAT
TGCGAAAA-------CATCGGTCATCATGTGCGGAGATTCGTGCGGAAAAAA--AAATCCGACGGCTGTAGTCGCGTCGC
GCAGGATAAGTTCGAAGCCGACGTTCGGGCGGCGCTGACCCTCCAATTCACCACCAAC---CCTCAACC---CGTTGATC
ACCAGGCACCAACCCCC-GCACATCTCCTCCGCCCTCTCCTTCTCCACCAGCTCCCCATCCATCCTCACCGAGCTCCAAG
AACTCCCACCACCCGCCGCCACCCACCCACCCGGCATGGCCGCCGCCGCGACCGCC------ACCGCCGTCCGCCTCCAC
GCGGCCGCCACGCGCCGCGCCGCCCCGCGCCGGCCGGCGCGCTTCGCGGTGCGCGCGGACGCCGCGCGGGCGGCGACGGC
GCTGACGCAGGACGACCTCAAGAGGCTCGCGGCGGTGCGCGCGGTGGAGCAGGTGCAGAGCGGCATGGTCCTGGGGCTCG
GGACGGGGTCCACGGCCGCCTTCGCCGTCGCCGAGATCGGCGCGCTCCTCGCCAGCGGGAAGCTCTCCGGCATCGTCGGC
GTGCCCACCTCCAAGCGCACCTTCGAGCAGGCCATGTCGCTCGGGATCCCGCTCTCCACGCTCGACGACCACCCCGTCAT
CGACCTCGCCATCGACGGCGCCGACGAGGTCCTCTCCTCCCTCTTCCCTCGCCATTGACTTTCTCTCTGCACCGTACCAT
TTTAGTTCTGACGGCTCTTACTGAGGTTCAGTTCAGATTGTCCCCTTAATTTTTCCC-AAGAACCATCTATGAT----TA
ACCATGTTTCAATTTTTTTACC---AAGCAGGTCGACCCAGATCTTAACCTTGTCAAAGGGCGGGGTGGAGCCCTGCTCC
GGGAGAAGATGGTCGAGGCCGCGTCAGCAAAGTTTGTCGTCGTCGTCGATGAGACGAAGCTGGTCGCCGGCCTGGGAGGG
AGCGGCCTCGCCATGCCGGTGGAGGTCGTGCAGTTCTGCTGGAAGCACAACCAAGTAAGGCTGCAGGGTCTGTTCAACGA
AGAAGGCTGCGAGGCGAAGCTGAGACTGAATGAGGATGGCAAGCCCTATGTTACTGACAACTCGAACTACATTGTCGATT
TATACTTCAAGACGCCGATCAGGGACGCGCTGGGCGCGGGCAAGGAGATTGCGGCTTTGGAAGGAGTTGTTGAGCATGGC
TTGTTTTTGAACATGGCAACTTCAGTGATCATTGCCGGATCGGACGGCGTCAGTGTCAAAACAAAGTGAGTGTTTTGGGT
CAGCTACCTGTTGTCGGTGTGTTGAATTTACGATTTTTCAATGAATAAGCTATCTGTGTAAAATGAGGAAATTATGTTGT
TCTATAAAATATAGTTTTTCTATGTTTCGTTGGCTCTCAC----AGTTTATTTTTGGCTTGAAAGAGAATCAGATTGTGG
ATAAAACACCACTTCAA---------------------------------------------------------------
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---------------------------------------TTGATTGAAGCCGTTGTGATCGTGACAAGTCAATGCC--AT
TAATCTTCTTGGGCGCCAATCATCTTAT-AGAACAACACTTTGAATAAACTTGGGAGCCTGCATGTATATCAGATAATTC
AGAATACAGCTCACCACAAGCTTATTCATCACCTAACATGCTACAAACTCAAGCAAGCAAAAATAGCAAAATATAATATG
CGGCTTATAGATGTACCTGTTAAAAGTTCT--TTTCCCCTTATTATTCTGGACAAGAAGTGTCGGCTGCATATCCATGTG
------GTCTTTCAAGGCAGCAAGGGCCAACACTGAAACAGTCTTATCAATGTAGAAATACAAAAACAAGAACAGCCGC-
--ACAACTTTATTCAGATATCAGCAAAATCTTCAGATAACTTATACTCCTAGTATTGAAGTACATCCAAGAACTGTTCTT
TTCTCAAAATGTCAACATGGTTTTGGAGTTGTATTCACAAGACAATTTCAGGTCAGAAAATTGGAGTACTGGTCCACAAG
GGAGGTGGGTGGGGTGTTTACACAGTGGAACTGTACAGCCTGAAGCTAATAAAATGC--AAATTATTGTGGGTTTATGTT
TTCCTTTCGAGCCCCCCCCCCCTTATAATCCCGTTTCTTTGAAGCTCCTTGACAACCATATGGCTGTCTCTCTTGGAGAC
GCCTTCCCAGGTCCAAAAGGCTTTAGCAAGATCCCCAGCTCCT----------------------------------GAA
A-------------------------------------------TCTCTCTTGTTGGAGCAACT----------------
-GGGCACTGAACTCAAGCAAGCCCTCTAGAGCCTCAGCTCGCTGCCGGTAGGATGTCGTGTCGAACCTCTTCTGCCTCCA
ATCAGACGAAC
>chr2D_1471
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------------------------------GTTCAGATTATCCTCTTCATTGTTTTCTAAGAACCATCGGTGAT----TA
ACCTTGTTCCTTTTTTTACTTCTATAAGCAGGTTGATCCAGATCTTAACCTTGTGAAAGGGCGGGGTGGAGCCCTTCTCC
GGGAGAAGATGGTCGAAGCTGCATCAGGAAAGTTTGTTGTTGTCGTTGATGAGACGAAACTAGTTACTGGCCTAGGAGGG
AGCGGTCTTGCCATGCCTGTGGAAGTTGTGCAGTTCTGCTGGAAGTACAATCAAGTAAGACTGCAGGGTCTGTTCAATGA
AGAAGGTTGCGAGGCAAAGCTGAGATTGAATGAGGATGGCAAGCCCTATGTTACTGACAACTCGAACTACATCGTAGATT
TATACTTCAAGACGCCAATCAAGGATGCGTTGGGCGCGGGCAAGGAGATTGCAGCTTTGGAAGGAGTTGTTGAGCATGGG
TTGTTCTTGAACATGGCAAGCTCAGTGATCATTGCTGGATCAGACGGTGTCAGTGTCAAAACAAAGTGACTTTTTTGGAT
CGG----CTGTTGTTGATGTGTTGAACTTACGGTTTTTCACTGAATAATCTATCTGTGTAAAAGGAGGAAATAATGCTCT
TCTATAAA-TATATCTTTTCCATGTTTCGATGGCT----C----AGTTTATTTTGGGCTTGAAAGAGAGTCACATTGCGG
AAAAAACACCACTTCAA---------------------------------------------------------------
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---------------------------------------TTGATTGAAGCCCTGGTGATTGTGACAAGTCAATGAC--AT
TAATCTTTTTGGGCGCCAATCATCTTCT-AGAACAACACTTTGAATAAATTTGGGAGCCTGCATGTATACCAGATAATTC
AGAATACAGCTCACCACAAGCTTATTCATTACCTAACATGCTACATACTCAAGGAAGCAAAAATAGAAAAATATATTGTA
CCGCT--TAGACTTACCTGTTAAAAGCTC-TTTTTC--------------------------------------------
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>chr1A_2002
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---------GTTGTTGATGTGTTGAGTTTATGATTTTTCAGTGAATAAGACATCTGCGTAAAATGAGGAAATTATGTTGT
TCTATAAA-TATAGTTTTTCTATGTTTCGCCGGCTCTCAC----AGTTTACTTTTGGCTTGAAAGAGAATCAGATTGCGG
ATAAAACACGACTTCAA---------------------------------------------------------------
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---------------------------------------TTGATTGAAGCCCTTGTGATCGTGACAAGTCAATGAC--AT
TAATCTTCTTGGGAGCCTATCATCTTAT-AGAACAACACTTTGAATAAACTTGGGAGCCTGCATGTATATCGGATAATTC
AGAATACAGCTCACGACAAGCTTATTTATCACCAAACATGCTATATACTCAAGCAAGCAAAAATAGCAAAATATAACGTA
CGGCTTATAGTCTTACCTGTTAAAAGCTC-TTTTTTCCCTTATTATTTTGGAGAAGAAGTGTCGGCTGCATATCCATGTG
------ATCTTTCAAGGCAG-AAGGGCCTACACTGAACCAATCTTATCAATGTAGAAATACAAAAACAAGAACAACCGAA
TTACAACTTTATTCAGATATCAGCAAAATTTTAAGATAACTTA------TAGTATTGAAGTACATCCAAGAATTGTTCCT
TCCACAAAATGTCAACATGGTTTTGGGGTTGTACTCAGAGGACCATTTCATGTCAGAAA--TGAATTACTGATCCACAAG
GGGGG---------------------------------------------------------------------------
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-----------------------------------CAACTCCT----------------------------------GAA
ATCTC---------------------------------------TCTCTCTTGTTGGAGCAACT----------------
-GGTCACTG-ACTCAAGCAAGTCCTCTAGAGCCTCAGCTCGCAGCCGGTAGGATGTCGTGTCGAACCTCTTCTGCCTCCA
ATCGGACGAAC
>chr3B_2002
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---------GTTGTTGATGTGTTGAGTTTACGATTTTTCAGTGAATAAGATATCTGCGTAAAATGAGGAAATTATGTTGT
TCTATAAA-TATAGTTTT-CTATGTTTTGCAGGCTCTCAC----AGTTTACTTTTGGCTTGAAAGAGAATCAGATTGCGG
ATAAAACACCACTTCAGTTTGATTGAAGCCCTTGTGATCGTGACAAGTCAATGACATTAATCTTCTTGGGCGCCTATCAT
CTTATAGAACAACACTTTGAATAAACTTGGGAGCCTGCATGTATATCGGATAATTCAGAATACAGCTCACCACAAGCTTA
TTCAGCACCAAACATGCTATATACTCAAGCAAGCAAAAATAGCAATCCTCCTCAAACACAATAATGTTATATCATTTACA
TCCAGTCCCCTCCAATCCTCCTCAAACGTCCACATACACGCCTGATCAGTGAACCAATAGGATAGAGAAGGAAAAAAGGT
GATCAAGCCGCAGCTGGTCCCCTCAAATTTAGCTAATTGCCCGTGTGTTGCAATGCGAACATACATATTCTAGTGACTCA
ATATTAGTTATGTCTAATCTGTATCTTTAGACCCACATCACATCGAATGTTGTGTCAGTTTTTGTTAACATGAAATCAGA
CTTGTTGTCTCCCTATTCCTCTCACCCCTTAGGTTCTTGATGTCATCATGTGGATGCTCTAAGACATACTCCATCCGTTC
CTAAATATTTGTGTCTTTCTAGAGATTTCAACAAGTGACTACATACGTAGCGAAATGAGTGAATCTACACTCTAAAATAT
GTCCAAAATGAGTGAATCTACATACAGAGCCGTACGTTGTTGATGTGATGAGTTTACGATTTTTCAGTGAATAAGATATC
TGCGTAAAATGAGGAAATTATGTTGTTCTATAAATATAGTTTTTCTATGTTTTGCAGGCTCTCACGGTTTACTTTTGGCT
TGAAAGAGAATCAGATTGCGGATAAAACACCACTTCAGTTTGATTGAAGCCCTTGTGATCGTGACAAGTCAATGAC--AT
TAATCTTCTTGGGCGCCTATCATCTTAT-AGAACAACACTTTGAATAAACTTGGGAGCCTGCATGTATATCGGATAATTC
AGAATACAGCTCACCACAAGCTTATTCATCACCAAACATGCTATATACTCAAGCAAGCAAAAATAGCAAA-TATAACATA
CGGCTTATAGTCTTACCTGTTAAAAGCTCTTTTTTTCCCTTATTATTTTGGAGAAGAAGTGTCGGCTGCATATCCATGTG
------ATCTTTCAAGGCAG-AAGGACCTACACTGAAACAATCTTACCAATGTAGAAATACAAAAACAAGAACAACCGAA
TTACAATTTTATTCAGATATCAGCAAAATCTTAAGGTAACTTA------TATTATTGAAGTACACCCAAGATTTGTTCCT
TTCTCAAAATGTCAACATGGTTTTTGAGTTGTACTCAGAGGACCATTTCATGTCATAAAATTGAATTACTGATCCACANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTCTCGTTGGATCAATG----------------
-GGGCACTGAACTCAAGCAAGTCCTCTAGAGCCTCAGCTCGCTGCCGGTAGGTCGTCGTGTCGAACCTCTTCTGCCTCCA
ATCGGACGAAC
>chr3A_2009
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----------------GTGTGTTGAGTTTACGATTTTTCAGTGAATAAGATATCTGCGTAAAATGAGGAAATTATGTTGT
TCTATAAA-TATAGTTTTTCTATGTTTCGCCGGCTCTCAC----AGTTTACTTTTGGCTTGAAAGAGAATCAGATTACGG
ATAAAACACCACTTCAA---------------------------------------------------------------
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---------------------------------------TTGATTGAAGCCCTTGTGATCATGACAAGTCAATGGC--AT
TAATCTTCTTGGGCGCCTATCATCTTAT-AGAACAACACTTTGAATAAACTTGGGAGCCTGCATGTATATCAGATAATTC
AGAATACAGCTCACCACAAGCTTATTCATCACCAAACATGCTATATACTCAAGCAAGCAAAAATAGCAAAATATAACGTA
CGACTTATAGTCTTACCTGTTAAAAGCTC-GTTTTTCCCTTATTATTTTGGAGAAGAAGTGTCGGCTGCATATCCATGTG
------ATCTTTCAAGGCAG-AAGGGCCTACACTGAAACAATCTTATCAATGCAGAAATACAAAAACAAGAACAAC--AA
TTACAACTTTATTCAGATATCAGCAAAATCTTAAGATAACTTA------TAGTATTGAAGTACATCCAAGAATTGTTCCT
TTCTCAAAATGTCAACATGGTTTCGGAGTTGTACTCAGAGGACCATTTCATGTTAGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAA
ATCTC---------------------------------------TCTCTCTTGTTGGAGCAACT----------------
-GGGCACTGAACTCAAGCAAGTCCTCTAGAGCCTCAGCTCGCTGCCGGTAGGACGTCGTGTCGAACCTCTTCTGCCTCCA
ATTGGATGAAC
>chr5D_2011
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------------------GTGTTGAGTTTACGATTTTTCAGTGAATAAGATATCTGCGTAAAATGAGGAAATTATGTTGT
TCTATAAA-TATAGTTTTTCTATGTTTCGCCGGCT----CTCATAGTTTACTTTTGGCTTGAAAGAGAATCAGATAGCGG
ATAAAACACCACTTCAA---------------------------------------------------------------
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---------------------------------------TTGATTGAAGCCCTTGTGATCGTGACAAGTCAATGAC--AT
TAATCTTCTTGGGCGCCTATCATCTTAT-AGAACAACACTTTGAACAAACTTGGGAGCCTGCATGTATATCGGATAATTC
AGAATACAGCTCACCACAAGCTTACTCATCACCAAACATGCTATATACTCAAGCAAGCAAAAATAGCAAAATATAACATA
CGGCTTATAGTCTTACCTGTTAAAAGCTC-TTTTTTCCCTCATTATTTTGGAGAAGAAGTGTCGGCTGCATATCCATGTG
------ATCTTTCAAGGCAG-AAGGACCTACACTGAAACAATCTTATCAATGTAGAAATACAAAAACAAGAACAACCGAA
TTACAACTTTATTCAGATATCAGCAAAATCTTAAGATAACTTA------TATTATTGAAGTACATCCAAGAATTGTTCCT
TTCTCAAAATGTCAACATGGTTTTGGAGTTGTACTCAGAGGAACATTTCATGTCAGAAAATTGAATTACTGATCCACAAG
GATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAA
CGGGCACTGAACTCAAGCAAGTCCTCTAGAGCCTCAGCTCGCTGCCGGTAGGACGTCGTGTCGAACCTCTTCTGCCTCCA
ATCGGACGAAC
>SNPs
-----------S-------------S--------------------------------------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----SS------S--S-S---SS---------
------S-------S-------------S---S-------S--S---------------------S--------S---SS
-S-SSS-S-SS------------S----------------------------------S-----S---------------
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------SSS-------------------
---------------------------------------S-S--------------------------------------
----------S-----------S---------------------------------------------------------
-----S--------------------------------------------------------------------------
----------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------S------------------------S-----------------------------------SSSS--
--------------------------------------------------------------------------------
-S-----S-----------------------------------------------------S------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S----------------------------------------S-----------------------------S----S---
------------------------------------------------------------S---------SS--------
-------------------------------------------------S------SS-SS----------S--------
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S----------------------------
-----------S----------------S---------------------------------------------------
---S------------S-S---------------S--------------S------------------------------
-----------------------------S-------------------------------------------S------
SSSSSS----------S----------------------------------S----------------S-----------
------------------SS----------------------S----------------------------------S--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
S-------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
-----------
>forward_1051
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------GAGCTCAAG
AACTCCCACCG---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------
>reverse_2042
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------TGACGGCGTCAGTGTCAAAA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------
>forward_2001
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------AGGAGTTGTTGAGCATGGG
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------
>reverse_3983
--------------------------------------------------------------------------------
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--------------------------------------------------------------AAACCTCTTCTGCCTCCA
ATCG-------
