>input_sequence_63766
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-------------------------------------------------------ATGGGCGGCGAGAACAAGGAGGCGG
CTGCGCTGGTGAAGAAGATCGCCGGCCTGCACGCCGCCATCTCCAAGCTACCGTCCCTGAGCCCGTCTCCCGAGGCGGAC
GCGCTCTTCACCGCCCTCGTGGCCGCGTGCGCCCCGCCGAGCGCCGCCGTCGACGTGGCCACGCTGGGCCCGAGGGCCCG
GAGGATGCGGGCCGACCTCGTCCGCCTCTGCGCCGACGCCGAGGCGCGCCTCGAGGCGCGCTGCTCCGACGCGCTGGCCG
CCCTCGACGC---CCCGCTCGACCACCTCAGG---CTCTTCCCCTACCACGACAACTACGTCCGGCTGGGCGAGCTGGAG
CACGCGCTGCTGTCCCGCCACGCGCCCGACCACCTCGCCGTGCCCGCGCGCGTCGCGTTCCTCGGCTCGGGATCCCTGCC
GCTCAGCGCGCTCCTGCTCGCCGCGCGCCACATGCCCGACGCGGCCGTCGACTGCTTCGACCGGTGCGGCGCCGCCAACG
AGCGCGCGCGGAGGCTGCTCCTCCGCGGGAACGACGCCGGCAA---------------CGTGGCCGCGCGCATGTCGTTC
CGCACGGCGGACGTCGAGGGCCTCACGCACGAGCTCGCCGCATACGACGTGGTCTTCCTGGCGGCGCCCGTCGGCGTGGC
GCCGGAGGAGAAGGCCCGCGTGATAGCGCACCTCGGCCGGCACATGGCCGCCGGCGCCGCCCTCGTTGTGCGGAGCGCGC
ACGGGGCCCGTGGCTTCCTGTGCCCCGTCGTGGAGCCCGCGGAGGTCAGGCGGGGCGGGTTCCAGGTGTTGGCCGTGCAC
CATCCCGAGAACGCCGAGATGGTCTACTCCGTCATTGTCGCACGTAAGGGCTACCTCG---------------AGCTCGT
GCCACCGGTGGTGAGCCCGCCGTGCAGCTGCTGCGAGGTGGAGAAGGCGCGCCGCAGCGTGCCGTCAACGAGCTGTCACC
TTGACGCCATGGACGAAATCCGGAGGCGCGCATGGTGA------------------------------------------
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>chr6A_1_TraesCS6A01G398700
GAATCACCGATCAAGTTGCTATATTTTATTGGACCGATGAAATTTTGTGGAGTCAAAACACTTGCATATTTCTTTCGCAA
AAAGAGAACAGTTG---------------------------------------------------------CATAGTTTA
TAAAGTTGGAGAAGTTGGCGACTTGCCATGAGCTGAT-TTCAATCCACTTATGGTCTCCAATAGAAAAAACCCGAAGCTA
TACGGACAA--------------TCACCTCCCATCACATATTCATGCGACATGTAATTCTTGTTTCAGTCATTTCAACAA
AAAGGAGAGCAAGAAACTGAGTTAAACTACACACATGAGTTTGTAGTCCT------------------------------
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------------------------------------------------TTTTTGGTCACTGACACTGTAGCGATTCAAAT
GGTTATTTCTTTGGGGCCAAAAATGGTTATTTTTTTATTGCAA-------------------------------------
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---------------------------------------TTTTTTGTTGGTAGCTTACCAAGCTGTCCGCTTGGTTGCGA
AAAATGGTTATTGAGGTGGATATTTAACAGTTGTGATACACCCCGTGTATTGATACAAATTTCTGTTCTTGGGCTCTCAT
TTCGTTCGTCATTGTTTCTGAGCATTTGGTTATCCTTGATCTTCATCTTCCTTGCCCTATTGGACACCATGATAATATGC
ATTCCGTCGCAACTCGCCGTGAATAAAAATGACAGCGTCTCTGCGCAGGAAGCAGGAGATACTTGGACCCGGATGGTTTC
GCACAACACAAGCTCCACCGAAAGTGTTGGATGCAATATCTCGGCGGAAATAATAAACTCAACT--TTCACACATGAGGG
CTCAAAA-GTGCCACCATAATTTTGAATTTTGGCCTGATACGTACGTAGCCAACGTAGGTG-----CCAG----------
------TCGTAACACAGG----CATGAAACTGGCCTTGGGCATGGCACGCGTGAAGCGAGCCACGATCGAGCTGCAGTGC
AGTGCCACCCAGCTTATATATATCACTTCCA-TCACCGGTCAAGTCCAGAGGTCATCAAACCCGCCATTGTCCGGAGCTC
CAGAGTCCAGACATCAGCAGCTACGCCGGTCTTTCCTGACACGTACAACGATCAGATGGGCGGCGAGAACAAGGAGGCGG
CTGCGCTGGTGAAGAAGATCGCCGGCCTGCACGCCGCCATCTCCAAGCTACCGTCCCTGAGCCCGTCTCCCGAGGCGGAC
GCGCTCTTCACCGCCCTCGTGGCCGCGTGCGCCCCGCCGAGCGCCGCCGTCGACGTGGCCACGCTGGGCCCGAGGGCCCG
GAGGATGCGGGCCGACCTCGTCCGCCTCTGCGCCGACGCCGAGGCGCGCCTCGAGGCGCGCTGCTCCGACGCGCTGGCCG
CCCTCGACGC---CCCGCTCGACCACCTCAGG---CTCTTCCCCTACCACGACAACTACGTCCGGCTGGGCGAGCTGGAG
CACGCGCTGCTGTCCCGCCACGCGCCCGACCACCTCGCCGTGCCCGCGCGCGTCGCGTTCCTCGGCTCGGGATCCCTGCC
GCTCAGCGCGCTCCTGCTCGCCGCGCGCCACATGCCCGACGCGGCCGTCGACTGCTTCGACCGGTGCGGCGCCGCCAACG
AGCGCGCGCGGAGGCTGCTCCTCCGCGGGAACGACGCCGGCAA---------------CGTGGCCGCGCGCATGTCGTTC
CGCACGGCGGACGTCGAGGGCCTCACGCACGAGCTCGCCGCATACGACGTGGTCTTCCTGGCGGCGCCCGTCGGCGTGGC
GCCGGAGGAGAAGGCCCGCGTGATAGCGCACCTCGGCCGGCACATGGCCGCCGGCGCCGCCCTCGTTGTGCGGAGCGCGC
ACGGGGCCCGTGGCTTCCTGTGCCCCGTCGTGGAGCCCGCGGAGGTCAGGCGGGGCGGGTTCCAGGTGTTGGCCGTGCAC
CATCCCGAGAACGCCGAGATGGTCTACTCCGTCATTGTCGCACGTAAGGGCTACCTCG---------------AGCTCGT
GCCACCGGTGGTGAGCCCGCCGTGCAGCTGCTGCGAGGTGGAGAAGGCGCGCCGCAGCGTGCCGTCAACGAGCTGTCACC
TTGACGCCATGGACGAAATCCGGAGGCGCGCATGGTGATTGAATGCAGCCT----ACGACCTCTTGAGACACAGCACCAA
ACAGAA----GTACCACACAATTACACAAAAATACTTCCTCTGTAAAGATATATAAGAGCACTTAGATCACTACGGAGGG
AGTATGAGTTAATATCTGTATCGGTAATAAATAAAAGGAACACTTCGCGAAAATGGGACAAGAATTTAGGGCACGACAAG
TGCAGGGCACTCAAGTCCTAGTGCCGGCCTTTTATTTTGGCTTCTGATTTTTAAAGTTTTATATCTTCTAAACAAAAAAA
TCCAAATTAAGTTATGTTTTCATATTCGTATTTCTCGTGACCAGCACTTTTAGATATGATTGATTTTGAATATATTTTGA
CGACTTCTAAAAAATGTGCTAAGTTTCAATGTTGAAACTTAGTATGAGCGAGCAATAAAAATCAATTATTTTGTGTCTAC
GACCGACACAATATTTTTTGCATAAAATTATATCCGGGAAACTGGTTGAAACTTTACAATTTTAAATGCAAAAGCCAGAA
GTTTCACTTAAAGCTTAGTGTGCCCTCGTGCGACATTCAACTACTACGCAAATCGCGAGGCAAATCAAACGGGCAGCAGG
CTTGGCAGATGAGTGCCTTTGCGCTCGTGTGCCCCTACGAATTTCCAGCGAAAATGGCGATTTTGAGCTGGGCCAACAGT
GTTTCAGATGCTCGCTTGCCTTGGGATTCCCTCGTATCCCATGTGTTAGGGCAAGAGACTCTCACAGGGTTTCATCTTCG
TCTAATAACACTAGTTTCCCTGCAAAAAAAAAGCGAGACTAGTTTGATGAGATTGATGTTGGGTCAAATGAGGTGGCCTC
GGGCTCTTCCTCACCACAGTGGCGTTTTCTTCGGTGGCGTTGCTAAAATGATGGCCTCGTCTGCTTATCGTTCATTTGGA
GTGGCAGACCTTACATTTCCTATGTCTGGCGGTTGTTCTCTCTCTTGACGGCGCCGGCAAATGGGACAAATTGGTGCCAG
CACAAG
>chr6B_2
-AATCACCGATCAAGTTGCTATATTTTATCGGACTGGTGAAATTTTGTGGACCACCGATGCTAAATCACAAAGTGAATTG
TCGCATGAACACTTTATCCGCTCATCGAAGTTACCAAACTTGAACCAATAGAATCACCGATCAAGTTGCTACATAGTTTA
TAAGGTTGGAGAAGTTGGTGACTTGCGATGATATGATCTTTAGTCCACTTATGATCTCCAATTAG-AAACCCGGAAGCTA
GAAACATCTCCTTTATAGAAAATTCATCTCCCATCACATATTCATGCGACATGTAATTGTTCTTTCAGTCATTTGAACAA
AAAGGAGAGCAAGAAATTGTTGTTCCCATATTAAAGATAATCCCAAGGCCAAGCAGGGGATTGAGGAAGAGCGATGGCCT
CGGGTTATGTCGCGGAGACAAGTGGCAAGGAGCGAGGCAGTCCCTGGGACTGGACGGGGCGTGGTAGGGGTGGGCATAAA
AACTGATGAACCGAAGACCGAACCGATGCCGAAACCGAATAAACCAAATTTTCGGTCTTTTCTACTGGTGCGGACAAATT
TGGTTTTCACTTCAACTAACAGAACATGAATTGGTAGGTTCGCTTTTATTCCCGGCGTGGGGGAATTCTCCTGTTAACCC
TGAACTATCGTGAGGGACTGTCACTCGAATTCAGTAAAGCACAGAAGAACTCAGAAGATGAACTTTGGGAAATTTGCGGC
GCGCAATGCGCTATAGGGTGTTATTAGCGAGACATTATTTTTTTTGGTGGAAAATTAGCGAGACATTATACATTAATTTA
TTTAGGGAGGCATTGCTCAGAACGCTATAGCGTGCTACTGGCGATGTTATAG----------------------------
-------------------------------------------------------------------CATGTTAATATTT
TTTTTTCGCTG---------------------------------------------------------------------
-------------------------GTTAGATGCAATATCTCTGCAGAAATAATAAACTCAACT--TTCACACATGAGGG
CTCAAAA-GAACCACTATAATTTTGCA-------CTGATACGTACGTAGCCAACGTAGCTAAGGCACCAG----------
------ACGTAACACAGGCATGCATGAAACTGGCCTT-GGCATGGCACGCGTGAAGCGAGCCACGATCGAGCTGCAGC--
---GCGACCCAGCTTATATACGACACTTCCG-TCACCGGACAAGTCCAGAGCTCATCAGACCTGCCATTTTTCGGACCTC
CAC-------ACATCAGCAGCTACCTGTTGCCTCGTACGT---------GATCAGATGGGCTGCGAGAACAAGGAGGCGG
CTGCACTGGTGAAGAAGATCGCCGGCCTCCACGCCGCCATCTCCAAGCTGCCGTCCCTGAGCCCGTCTCCCGAGGCGGAC
GCGCTCTTCACCGCCCTGGTGGCCGTGTGCGCCCCGCCGAGCGCCGCCGTCGACGTGGCCGCGCTGGGCCCGAGGGCACG
GAGGATGCGGGCCGACCTCGTCCGCCTCTGCGCCGACGCCGAGGCGCGCCTCGAGGCGCGCTGCTCCGACGCGCTCGCCG
CGCTCGACGC---CCCGCTCGACCACCTCAGG---CTCTTCCCCTACCACGACAACTACGTCCGCCTGAGCGAGCTGGAG
CACGCGCTGCTGTCCCGCCACGCGCCGGACCACCTCGCCGTGCCCGCGCGCGTCGCGTTCCTCGGGTCGGGCTCGCTGCC
GCTCAGCGCGCTCCTGCTCGCCGCGCGCCACATGCCCGACGCCGCCGTCGACTGCTTCGACCGGTGCGCCGCCGCCAACG
AGCGCGCTCGGAGGCTCCTGCTCCGCGGGAACGACAACTCCC---------------GCGTGGCCGCGCGCATGTCGTTC
CGCACGGCGGACGTCGAGGGCCTCACGCACGAGCTCGCCGCCTACGACGTGGTCTTCCTGGCGGCGCCCGTCGGCGTGGC
GCCGGAGGAGAAAGCCCGCGTGATAGCGCACCTCGGCCGGCACATGGCGGCCGGTGCCGCCCTCGTCGTGCGGAGCGCGC
ACGGGGCTCGTGGCTTCCTGTGCCCCGTCGTGGAGCCTGCGGAGGTCAGGCGTGGCGGGTTCCAGGTGTTGGCCGTGCAC
CATCCCGATAATGCCGAGATGGTCTACTCCGTCATTGTCGCACGTAAGGGCTACCTCG---------------AGCTCGT
GCCACCGGTGGTGAGCCCGCCATGCAACTGCTGCGAGGTGGAGAAGGCCCGCGGCAGTGTGCCGTCAACGAGCTGTCATC
TTGACGCCATGGACGAGATCCGGAGGCGCGCATGGTGATTGAATGTCACACGTACACGCCCTCTTGAGACAGAGCACGGA
ATTGAAGCACGTACCACACAAGTACACAAAAATAC---------------------------------------------
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>chr6D_689
AATGAT--------------------------------------------------------------------------
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---------------------------------------CTCTGCGGAAATAATAAACTCAACTAATTCACACATGAGGT
CTCAAAAAGTACCACTTTAATTTTGGG-------TTGATACGTACGTAGCCAACGTAGCTAGCTAGGCACCACTGCACCA
GACGTAACGTAACACAGGCATGCATGAAACTGGCCTTGGGCATGGCACGCGTGAAGCGAGCCACGATCGAGCTGCAGTAC
AGTACGACCCAGCTTATATATACGGCACTTCGTCACCAGTTAAGTCCAGAGCTCATCAAACTCGCCATTTTCCGGAGCTC
CAGAGTGCAGACATCAGCAGCTACGCCGATCTTTCTTGGCACGTACGACGATCAGATGGGCGGCGAGAACAAGGCGGCGT
CTGCCCTGGTGAAGAAGATCGCCGGCCTCCACGCCGCCATCTCCAAGCTGCCGTCGCTGAGCCCGTCTCCCGAGGCGGAC
GCGCTCTTCACCGCCCTCGTGGCCGCGTGCGCCCCGCCGAGCGCCGCCGTCGACGTGGCCACGCTGGGGCCGAGGGCCCG
GAGGATGCGGACCGACCTCGTCCGCCTCTGCGCCGACGCGGAGGCGCGCCTCGAGGCGCACTGCTCCGACGCACTCGCCG
CCCTCGACGC---CCCGCTCGACCACCTCAGG---ATCTTCCCCTACCACGACAACTACGTCCGGCTGGGCGAGCTGGAG
CACGCGCTGCTGTCCCGCCACGCGCCAGACCACCTCGCCGTGCCCGCGCGCGTCGCGTTCGTCGGGTCCGGCTCCCTGCC
GCTCAGCGCGCTCCTGCTCGCCGCACGCCACATGCCGGACGCGGCCGTCGACTGCTTCGACCGGTGCGGCGCCGCCAACG
AGCGCGCTCGGAGGCTGCTGCTCCGCGGGAACGACGGC---------------GGCGGCGTGGCCTCGCGCATGTCGTTC
CGCACGGCGGACGTCGAGGCGCTGACGCACGAGCTCGCCGCCTACGACGTGGTCTTCCTGGCGGCGCCCGTCGGGGTGAC
GCCGGAGGAGAAAGCCCGCGTGATAGCGCACCTCGGCCGGCACATGGCCGCCGGCGCCGCCCTCGTCGTGAGGAGCGCGC
ACGGTGCCCGCGGCTTCCTGTGCCCCGTCGTGGAGCCCGCGGAGGTCAGGCGGGGCGGGTTCCAGGTGTTGGCCGTGCAC
CATCCCGATAATTCCGAGATGGTCTACTCCGTCATTGTCGCACGTAAAGGTTACCTCG---------------AGCTCGT
GCCACCGGCGGTGAGCCCGCCGTGCAACTGCTGCGAGGTGGAGAAGGCGCGCGGCAGTGTGCCGTCAACGAGCTGCCACC
TTGATGCCATGGACGAAATCCGGAGGCGCGCGTGGTGATTAAATCCAG--------------------------------
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>chr3A_990
ACAACGCC------------------------------------------------------------------------
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----------------------------------------------------CAGATGGAGGCCCAGTGCAAGGAGGCGG
CCGCCCTGGTGAAAAAGATCGCCAGCATCCACGCCGCCCTCTCCAAGCTGCCGCCCCTGAGCCCGTCTTCCGACGCCGAC
GCGCTGTTCACCACGCTCGTCGCCGCGTGCGTCACGTCGAGCCCCGCCGTCAATGTCACGTCGCTGGGCCCCGAGGCCGG
GAGGATGCGTGACGACCTCGTCCGACTCTGCGCGGACGCCGAGGCGCGCCTCGAGGCACAATGCGCCGACGCGCTCGCCG
CCCTCGACGGCGACCCGCTCGACCACCTGGGGCGCCTCTTCCCGTTCTACGACAGCTACGCCCGCCTGGGCGAGCTGGAG
CACGCGCTCTTATCCCGGCACGCGCCGGACCACCTCGCCGTGCCCGCGCGCGTCGCGTTCCTCGGGTCGGGCTCGCTGCC
GCTCAGCCCGCTCCTGGTCGCCGCGCGCCACATGACGGACGCGGCCGTCGACTGCTACGACCGGTGCGCCGCGGCCAACG
ACCGGGCGAGCAGGCTGCTGCTGCGCCCGCGCGCCGACGACGACGAGAAGCGTGGCGGCCTGGCCGAACGCATGTCGTTC
CGCACGGCCGACGTCGAGGACCTGACGCGCGATCTCGCCGCGTACGACGTGGTCCTCCTGGCGGCGCCCGTCGGCGTGTC
GCCGGGGCAGAAGGCACGCGTTGTGGCGCACCTGGGCGAGCACATGGCGGATGGCGCGGTGCACGTCGCGCGGAGCGCGC
ACGGGGCACGCGGGTTCCTGTGCGCCGTCCTGGAACCCGCGGACGTCGCCCGGGGCGGGTTCCAGGTGCTGGCGGTGCAC
CACCCCGACGACCGCCAGGTGATCAACTCCATCATCGTCGCCCGTAAGGTGGCGGCTGTGGGTGGACTCTCCCAGCTCGC
GCCGCCGGTGTTGAGCCCGCCGTGCAAGTGCTGCGAGCCAAAGACACCGCGCAGGAGACTGCTGCCGACGACCTGCCACC
TCGACGCGATGAACGAAATCCGTAGGCGCGCATGGT--------------------------------------------
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>SNPs
S----------------------------S----S-S--------------SSSSSS-SS--SSSSS-SSSSS-SSSSSS
SSSS-SS-SSSS-S------------------------------------------------------------------
---S--------------S-------S----SS-------S-S----------S--------SSSS---S--S-------
S-SSS-SSS-----------------S-------------------------------S--S------------S-----
----------------S--SSS-SSS-SSSSS-S-SSSSS-SSS-SSS-S------------------------------
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----------------------------------------------------S----SS-SSS----SS---SSSS--S-
S-S-S--SSS--SSSSSS-S-S-SSS-S-S--SS-SSS-S-SS-------------------------------------
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----------------------------------------------S---S-SS---S-S--SSS-SSSSSSSSSSSSS-
SSS-S--SSSSSSS-S-SSSS-SSSS-S--SSSSSSSSSSS-SSSSS---S-SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S------SS
S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS---S-------------S-------------------------------------
----------S----S---------S-SSSSSSS------------------------S-S-------------------
------S-----------------------------------------------------------------------S-
-----S----------------S-------S--------------------S-----------------S----------
------S---------------------S------S--S-------S---------------------------------
----S-----------------------S--------------------S------------------------------
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---------------------------------------------------------------------------S----
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--------------------------S--------------------------------------S-----S--------
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-------------------S----------------S--S-S--------------------------------------
-----------------------------------------S--------------------------------------
------------------------------------------------------------------S-------------
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--------S-----------------------------------------------------------------------
--------------------------S-------------------------S----S----------------------
-------------------------------------------------SS-------S------------S-----SS-
-SS------------------S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS
>forward_1054
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--------------------------------------------------------------------------GGTTTC
GCACAACACAAGCT------------------------------------------------------------------
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>reverse_2662
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---------------------TGCCGGCCTTTTATTTTGGC---------------------------------------
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