>input_sequence_63738
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--------------------------------------------CCATAAAA-GACCACAAGCCCCACATTTGAGCTCCG
AAACTCCACACCACACCACACCACGGCACCACAAGCCACAGCTTCTTTGCAATGCCCAACCCGCCCACCCCCTCCTCGCC
GTCGCCGCTCCCGGCCCCGGCGCGCAAATCTCCGTCCAGCCGCCGGCGCCAGCGCCTGCTCGCGTCCCCGAAGCCGTCGT
CTGCTCCCACCTCCTCGTCCTCGTCGGCCTCGTCGGCGTCGTCTTCCTCCGCCTCCTTCTCCTTCGCCCCCTTCTCCCCG
GCGCCCTCGCCGTTCCACCACCGCTTCCTCTCCCCGCTCCGTGCCTCCGCGGTGCCCTTCTCCTGGGAGCACCGGCCCGG
CATCCCCAAGACCCCCGCGCGCGGCGCCGGCGCCCGCAGCAAGTCCGGCGCCCCGTCGCCGCTGCCCCTCCCGCCGTCGC
TCTTCTCCAACAACAAGGTGGTCGCCGAGTACTCCTTCGGCGCCGACGGGGCCTACTCCGTCGTCCCCGCGAAGGCGAGG
AGGCGCAAGCAGCAGCGGCGGTGGCCGGCGGTGACCGACGCCCTGACCGAGTGGCTGGCCGTGCTGAGCCTCTACCGGTC
GTGCACGAGGTCGCGCGACTCCCTCGCCGCCTCAGGCCCGCCGCCGCACCCGCGCCGGTGCTCGCCCTAGGCCTGGCCGG
CGAGCCGGCCGGCATCGACCAATACGTAACGTACGTAGAGAGTCGGTGTGCGTGTGCCCGTATTGTCTGTCCTTCC----
----TTTACTTTTTCTTGGGTGTGTGGGTTGTGTTGAGTGCGTGCGTACGTACGTATACGTTCGGTGGTGCCCGATCGTA
GCAC--CGCCGATGAATTAGGAATGTGCTTGCGAATTTGGTGACATGACGCTGTAATTAAGGGTGTCTTTTCGTGTGTCG
GTATGTGCATGTGCTTGCTC--------CAATAATTAATGGATAATTCGGCACGATTGATTGATTTTTAGTACTATTAGG
CCAGTTGT-GA---------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G304700
ACAAGGGCAAACGTCCATCATCATGGGCAGATCTAGGAGGTTGCTATGGGTGTCATGGCACCCCTATGAAAACGAGAAAA
AATATACTTCTTTTGTGTAATTTTTGGACTATTTGTTGGATTTACTATGACATTTAGACACAATCATACTACCTTTGTGT
AATTTCTCTAAAACTTTTACCTATGTGTTGATATTTGGCACCACTAGCAATTTGCTCGTAGGTCCGCCACTGTCAATCAT
TCAATGTTAAATGGAGGGTTCTACTCTCTCCGTAACAAAAGTGTAAGAGGCAGTGTTTTTTTGGTAATCCCAACCCTCCT
CATGGAGTGCCAACTCTTAATTTTGTTGGAAGTTGTGTCTTTAAAACTATGTCTGTGTCTATTAGTTTGGCCGTTTGAGG
AACTTGAGGGAGTATAAATCAAAGTAATCATGATGGAAGCAAACATCATGTACGGTGTGTTAAGGATTGCTTCTTCAAAA
TCAAAATCCTAGTTTCTCGTGTTTATTTACTTGTGTTTTTTAAGCTAGTCATAGTGGTAGTAATTTAGCTAGTAACATAG
CGTACTTCAAAATTTTTTTGCTTATATGGCATGTAGTTAATAAGAAGTAGTAACATGATATGTTACTGTAACATAGCGAT
TTCCAAGACAAAATGAGTCTATAAATTAATAAATGAAGTCTCTCTATGACACTAATGCTATGTTACTTTGCACCATAAAG
ATAATAATTTAGACTAGTGTCGTATGCATGACACTAGTATAAGTTACTCCTCGCTATGACCGGCCTTAGAAAAATGGGTG
TGTATGAGCCGTGATTTTGGCATGTCTTCTGTAAACTCACAACACCAGGAAAAAGAGTATGCCAT----TGCCATACGAC
CCGGCTCCTCTGCCAACGTGTACAGAGGAAGCAAGGCAGGCGTCCACGTCATGCCATGCCACGTGGCGGAGCTAGCCAGC
CAGACCGCGCCCCCATTTGCGCGCGCGCCGACGCCATGACCAAACCATAAAA-GACCACAAGCCCCACATTTGAGCTCCG
AAACTCCACACCACACCACACCACGGCACCACAAGCCACAGCTTCTTTGCAATGCCCAACCCGCCCACCCCCTCCTCGCC
GTCGCCGCTCCCGGCCCCGGCGCGCAAATCTCCGTCCAGCCGCCGGCGCCAGCGCCTGCTCGCGTCCCCGAAGCCGTCGT
CTGCTCCCACCTCCTCGTCCTCGTCGGCCTCGTCGGCGTCGTCTTCCTCCGCCTCCTTCTCCTTCGCCCCCTTCTCCCCG
GCGCCCTCGCCGTTCCACCACCGCTTCCTCTCCCCGCTCCGTGCCTCCGCGGTGCCCTTCTCCTGGGAGCACCGGCCCGG
CATCCCCAAGACCCCCGCGCGCGGCGCCGGCGCCCGCAGCAAGTCCGGCGCCCCGTCGCCGCTGCCCCTCCCGCCGTCGC
TCTTCTCCAACAACAAGGTGGTCGCCGAGTACTCCTTCGGCGCCGACGGGGCCTACTCCGTCGTCCCCGCGAAGGCGAGG
AGGCGCAAGCAGCAGCGGCGGTGGCCGGCGGTGACCGACGCCCTGACCGAGTGGCTGGCCGTGCTGAGCCTCTACCGGTC
GTGCACGAGGTCGCGCGACTCCCTCGCCGCCTCAGGCCCGCCGCCGCACCCGCGCCGGTGCTCGCCCTAGGCCTGGCCGG
CGAGCCGGCCGGCATCGACCAATACGTAACGTACGTAGAGAGTCGGTGTGCGTGTGCCCGTATTGTCTGTCCTTCC----
----TTTACTTTTTCTTGGGTGTGTGGGTTGTGTTGAGTGCGTGCGTACGTACGTATACGTTCGGTGGTGCCCGATCGTA
GCAC--CGCCGATGAATTAGGAATGTGCTTGCGAATTTGGTGACATGACGCTGTAATTAAGGGTGTCTTTTCGTGTGTCG
GTATGTGCATGTGCTTGCTC--------CAATAATTAATGGATAATTCGGCACGATTGATTGATTTTTAGTACTATTAGG
CCAGTTGT-GATTAAACGAGTA----TTTTATTGTTGGTTAAAGGATTCAATAATGTTAGTTTTACACTTGGCATTATTA
CATGCATGTGGGTGGTGCACTGCTGAGGATGGATGTCTTCTGCAGTTTCTCTTTTCCAGAAAATGTGCTACGAGTACGCT
ATATTTGTGATTTGTTAGATTGCATGCACTATCACGGTCAAGTGGGGCACGACTGTTGCAAGCACGATATGATTGTCGAG
GATATGTTGCTATAC-----------------------------------------------------------------
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-------------------------------------------------------------------------TATTGTC
TTCTCTTTTGTAGAATGCTTCATGGTTTTTTAGGGATGAAACAG--TAAATAAGTGTCCTACTCTACTGTACATCGTTTG
GTGGCCGACGATCTTGCCGTGCCTTAATGGAATGCATGGTGTTCATGTAAGGAAAAAAATGCCCTACTGTATAAGTCTGT
TCAACATAGAATTATAAAATCAAAGTAAATAGTTTTCATGTGTTCACAGATTTTTTTA----TATATTTACATAAAGAAA
GAATCGGAGTTAAATAAAATGACTTCCAGAGGTGGATA---GTTTTTTGAATGAAGGCTATATATAAATATCAAGATGAT
ACCAATTACACCCTGCCTCGAGAACGATACGATATCAAGAGCTAGTCAAAATATCGAGGTGT-TAGGTTTATTAAGCAAA
TAGCACTTACATTTTCCATATTATGCTAGTATTGCCGTCTCATATCATACAGATTTGGCATTGACCGCTTGCATACAAGA
CGATTAATCATTGAGATATTCTTTTAGGTATCATGTTGTGGCAAGTGTTGCTTTACAAAAACCACAAATGTGGATG-TTT
GCAGACTTCCAAACTTTGCATGCGTACGTGAAGTCTGCAAACGTCCGCATATGTGGTTTTTGTATTAGCTCAGAGAACAA
CTGGGCTGGCTATGCGCAGAAAAGAGAGTACAGAGCAAGCCGCAGTATGAGGAGTACCATGGTTCACATGTCAGTGAAAC
AAAACTATCA-TTTTTTATCAGTGGCGAATGTCCACTTTATTCAT
>chr2B_838
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-------------------------------------CACAACACCAGGAAAAGGAGTACTCCTACGACTGCCATTCGAC
CCGGGCCCTCTGCCAACGTGTACAGAGGAAGCAGGGCAGGCGTCCACGTCATGTCATGCCACGTGGCGGAGCTAGCCAGC
CAGACCGCGCCCCCATTTGCGCGCGCGCCGACGCCATGACCCAACCATAAAAAGACCACAAGCCCCACACTTGAGCTCCG
AAACT-----CCACACCACACCACGGCACCACAAGCCACAGCTTA---GCAATGCCCAACCCGCCCACCCCCTCCTCGCC
GTCGCCGCTCCCGGCCCCGGCGCGCAAATCTCCGTCCAGCCGCCGGCGCCAGCGCCTGCTCGCGTCCCCGAAGCCGTCGC
CCGCTCCCACCTCCTCGTCCTCGTCGGCGTCGTCGGCGTCGTCTTCCTCCGCGTCCTTCTCCTTCGCCCCCTTCTCGCCG
GCGCCCTCGCCGTTCCACCACCGCTTCCTCTCCCCGCTCCGTGCCTCCGCGGTGCCCTTCTCCTGGGAGCACCGGCCTGG
CATCCCCAGGACCCCCGCGCGCGGCGCCGGCACCCGCAGCAAGTCCGGTGCC---CCGCCGCTGCCCCTCCCGCCGTCGC
TCTTCTCCAACAACAAGGTGGTCGCCGAGTACTCCTTCGGCGCCGACGGCGCGTACTCCGTCGTTCCCACGAAGGCGAGG
AGGCGCAAGCAGCAGCGGCGGTGGCCAGCGGTGACCGACGCCCTGACAGAGTGGCTGGCCGTGCTGAGCCTCTACCGGTC
GTGCACGAGGTCGCGCGACTCCCTCGCCGCCTCAGGCCCGCCACCGCACCCGCGCCGGTGCTCGCCCTAGGCCTGGCCGG
CGA----GCCGGCATCGACCAATACGTA-----CGTAGAGTGTTGGTGTGCGTGTTCCCCGTAT---TGTCCTTCC----
----TTT-CTTTTTCTTGGGTGTGTGGGTTGTGTTGAGTGCGTACGTA----CGTATACGTTCGTTGGTGCCCGATCGTA
GTAC--CACCGATGAATTAGGAATGTGCTTGCGAATTTGGTGACATGACGCTGTAATTAAGGGTGTCTTTTCGTGTGTCG
GTATATGCATGTGCTGTGCTTGCTCCAACAATAATTAATGGATAATTCGGCACGATTGATTGATT------------AGG
CTGCTTGTTGATTAGTACAAGATTTTTTTTATTGTTGGTTAAAGGATTCAATAATGTCAGTGTTACACTTGACATTATTA
CATGCATGTGGGTGGTGCAGTGCTC---ATGCATGTCTTCTGCAGTTTCTCTTTTCCAGAAAATGTGCTACGATCACGCT
ATATCTGTGATTTATTAGATTGCATGCACTGTCACGGTCAAGTGGGCCACGACTGTTGCAAGCACGATATGATTATCGAG
GACATGTTACTATATTATTGTCCTCTCT----------------------------------------------------
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-----TTTTGTAGAATAATCCATGGATTTTTGGGAACAAACAGTACTAAACAGATGCGCTACTGTACAGCGTTTGATGG-
-----CGACGATCTTGTCGTGCCTTAATGGAATGCATGCGTTTCTGTAA---AAAAAAAAGCCCTATGGTATAAGTCTGT
GCAATATAGAATTATAAAATCAAAGTAAATA-TTTTCATGTGTTCAGAGAAAAAT-AATATTTATATTTACATAAAGAAA
GAAGAGGAGTTAAATAAAATGACTCTCAGAGGTGGATA---GTTTTTTGAACAAAAGCTATATATAAATATAAAAATGAT
GCCAATTACCCCTTGCCTCCACAACGATACGATATCAAGAGCAAGTCAAAACATCGAGGTGTGTACGTTTATTAAGAAAA
TAACACTTACATTGTCCATATTATGCTAGTATTATCGCCTCATATCATACATATTTG-CATTGACCGCTTGCATACGAGA
TGATTAATCATTGAGATATTTTTTTAGGTATCCTGCTGTGGCAAGTGTTGCTTTACAAAAACCACGGATG----------
-------------------ATGTGTCCGCGAAGTCCGCAAACGTTCGCATTTGTGGTTTTTGTATTAGCTCAGAGAACAA
GT-GGCTGGCTATGCGTAGAAAAGAGAGTACAGAACCAGCTGCAGTATGAGGAGCCCCATGGCCCACATGTCAGTGAAAC
AAAAATGTCATTTTTTTATCCGTGGCGAATATCCACTGTATTC--
>chr2D_838
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-------------------------------------CACAACACAAGGAAAAAGAGTATGCCAT----TGCCATACGA-
CCGGCTCCTCTGCCAACGTGTACAGAGGAAGCAAGGCAGGCGTCCACGTCATGCCATGCCACGTGGCGGAGCTAGCCAGG
CAGACCGCGCCCCCATTTGCGCGCGCGCCGACGCCATGACCCAACCAT-AAAAGACCACAAGCCCCACACTCGAGCTCCG
AAACT-----CCACACCACACCACGGCACCACAAACCACAGCTTCTTTGCAATGCCCAACCCGCCTACCCCCTCCTCGCC
GTCGCCGCTCCCGGCCCCGGCGCGCAAATCTCCGTCCAGCCGCCGGCGCCAGCGCCTCCTCACGTCCCCGAAGCCGTCGT
CCGCTCCCACCTCCTCGTCCTCGTCGGCGTCGTCGGCGTCGTCTTCCTCCGCGTCCTTCTCCTTCGCCCCCTTCTCCCCG
GCGCCCTCGCCGTTCCACCACCGCTTCCTCTCCCCGCTCCGGGCCTCCGCGGTGCCCTTCTCCTGGGAGCACCGGCCTGG
CATCCCCAAGACCCCCGCGCGCGGCGCCAGCACCCGCAACAAGTCCGGTGCC---TCGCCGCTACCCCTCCCGCCGTCGC
TCTTCTCCAACAACAAGGTGGTCGCCGAGTACTCCTTCGGCGCCGACGGCGCGTACTCCGTCGTCCCTGCGAAGGCAAGG
AAGCGCAAGCAGCAGCGGCGGTGGCCGGCGGTGACCGACGCCCTGACCGAGTGGCTGGCGGTGCTGAGCCTCTACCGGTC
GTGCACGAGGTCGCGCGACTCCCTCGCCGCCTCCGGCCCGCCGCCGCACCCGCGCCGGTGCTCGCCCTAGGCCCGGCCGG
CGAGCCGGCCGGCATCGACCAGTACGTAACGTACGTAGAGAGTCGGTGTGCGTGTGCCCCGTAT---TGTCCTTCCTTTT
CCTTTTT-TTTTCTCTTGGGTGTGTGGGTTGTGTTGAGTTCGTACGTA----CGTATACGTTCGTTGGTGCCCGATCGTA
GTACAGCACCGATGAATTAGGAATGTGCTTGCGAATTTGGTGGCATGACGCTGTAATTAAGGGTGTCTTTTCGTGTGTCG
GTATGTGCATGTGCTTGCTC--------CAATAATTAATGGATAATTCGGCACGATTGATTGATT--TAGTACTGTTAGG
CCAGTTGTTGATTAAACGGTTA----TTTTATTGTTGGTTAAAGGATTCAATAATGTCAGTTTTACACTTGGCATTATTA
CATGCATGTGGGTGGTGCAGTGCGC---ATGCATGTCTGCTGCAGTTTCTCTTTTCCAGAAAATGTGCTACGAGTACGCT
ATATTTGCGATTTATTAGATTGCATGCGCTATCACGGTCAAGTGGGCCACGACTGTTCCAAGCACGATATGATTATCGAG
GACATGTTGCTATATTAGGTGGTGTTTGGTTCTCTAGTCCTAGGACTTTTTCTAGTCCCAACTAAAAAGTCCCTAGTCCC
TAAAAAATCCCTCTCTGTTTGTTTTCAGAGACTAAAAAGTCCTTAGTCCCTTCCTAAAGGTTATTAAATAACCATGTTGC
CCCTATTATATAGAAAAATAAAAATCAAACAACACCATGAGGTGGCGGGCCAATGAGTGCATGGAGGGGCATTGTTGGAA
AAGTCCCAAAAAGACTCTCCTTAAGAGTCTTCTTCATTTAGTCCCAAATGCCTAGTTTAGTCCCTAAAAAGTCCCTCCCG
TTTGATAAAAAAGTCTCTAGAGGGACTTTTTCTAGTCCCTACACAAAAAAGTCCCTGAAAACAAACACCCTCTTATTGTC
TTCTCTTTTATAGAATGCTTCATGGTTTTTTAGGGAAGAAACAG--TAAACAAATGTCCTACTGTACAGCGTTTGGCGG-
-----CGACGATCTTGTCGTGCCTTAATGGAATGCATGGTGTTTGTGTAAAAAAGAAAATGCCCTACTGTATAGGTCTGT
TCAATATAGAATTATAAAGTCAAAGTAAATA-TTTTCATGTGTTCAAAGAAAATTAAATATTTATATTTACATAAAGAAA
GAAGAGGAGTTAAA-AAAATGACTTTCAAAGGTGGGAGTGGGTTTTTTGAACAAAGGCTATATATAAATGTCAAGATGAT
ACCAATTACACCCTACCTCAAAAACAATACGATATCAAGAGCTAATCAAAATATCGAGGTTTGTAGGTTTATTAAGCAAA
TAACACTTAG-------ATTTTATGCTAGTATTATCGTGTCATATCATACAGATTTGGCATTGACCGCTTGCATATGAGA
TGATTAATCATTGAGATATTCTTTTAAGTATCTTATTGTGGCAAGTGTTGATTTACAAAAACCACAAATGTGGACGTTTT
GCAGACTTC-----------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------
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-----------------------------------------S---------------------------S----------
-----SSSSS----------------------------------------------------------------------
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-S--------------------------S-----------------------S---------------------------
-----------------------------------------------------------------------------S--
-------------------------------S----------------S---SSS-------------------------
-------------------------------------------------S--S---------------------------
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-----------------------------------------------------------SSSS-SSS-------------
-------S-----------------------------------S----SSSS------------S---------------
-S-----S------------------------------------------------------------------------
-----------------------------------------------------------------SS-------S-----
-------------------S-------------------------------------S----------------------
-------------------S----SSSS---S------------------------------------------------
-------------S--------------------------------S---------------------------S-----
--S-----------S-----------------------------------------------------------------
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------------------------------------S-------------S--S---------S---S-SSSS-S--SSS
SSSSS-----------S---------------------------S-----SS----------------------------
----S--------------------------S--------------S---SSS--SS-----------------------
---SS--------------------S-------------------------SS---------------------------
-------------------S-S----------------------------------------------------------
--S----------S-------------------SS-----------------------------------------S---
S-------------------------------S-----------------------------------------S-----
---------SSSSSSSSSS---S--S--S------S--------S-----S-----------------------------
S-S-------------S-----------------S-S---S-------------SS------SS----------------
----S-S-------------S---------S------S-----SS
>forward_789
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-------------------------------------------------CTCGCTATGACCGGCCTTAG-----------
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>reverse_2710
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---------------------------------------------------------------------TACATCGTTTG
GTGGCCGAC-----------------------------------------------------------------------
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