>input_sequence_63713
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----------------------------------------ATGCGCGCCGCCGGCTTCGGCCCCACCACCGCCACCTACA
ACGTCCTCCTCAAGGCCCACTGCTCTGATGCCGACGCTCCTATCGACCACGCGGTCCGCCTTTTCCGCAACATCCCCAAA
CCTGACGCCTGCTCCTACAACACCGTCATCGACGGGCTCTGCCGCCGCAGCCGCAGGGCCGAGGCCCAGGAGCTGTTCTC
CGAGATGGTAGAAAATGGCGTTGCGCCCACAGTGGTTACTTACACGACTATCATCAATTGGCTCGCACGGGAGGGCTGCT
TGGACGATGCACTGGAGATGTTTGACGAAATGGGAAGGAGAGGTATTGCACCCAATGTTATTACATATAGTTCTCTGATT
GATGGTTTGTGCAAGGGTGGGCGTGCATCATCAGCACTGGACTTGTTGGAGAGGTTGACCAAGGAGGTGAAGCTGCCAAA
TACAATCATATATAGTTCTGTCATTAATGGCCTCTGTAAGGAGGGCCTGCTGAGGGAGGCAATGGAGGTTTTGGACCGGA
TGCGTCTCCAGGGGAGGAAGCCTGATGCTGGATTGTTTGGGAAGCTCATTGTTGGGCTGTCTGATGCAGGAAGGGCTGTG
GAGGCTGCAAATTACTTGGATGAGATGGTTCTTGCTGGCGTTCAACCGAACCGGGTGACTTGGAGCCTTCATGTCAGGAT
AAACGTTGCAGTGGTGACAGCATTATGTGTTAAGGGTGAAGTTGGGAGGGCTTTCCAGGTGTACCAGAGCATGAGGACTC
GTGGCATTTCTACCGAGCCAAGCATTTTCCATCTCCTGGTTGAGTTCTTCTGCAAAAAGAACCATTTGGAGAAAGCAGCT
TGTGTTGTGCTTGACATGTTGTCAGAGAGGTGCATCCCTGAGAGGGAAACATGGGATGTTATTGTCAGCGGGTATTGGAG
TAAGAAGAAAGTCAGACAAGAAGCTGAGCAAATATGGAACCAATTAGCAGTTATCTGATTGAAAATAAA-----------
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>chr3B_1_TraesCS3B01G273800
CCATATTATATGCATACTGTGCTCATTGAACGGACAAGATGCAATCGAAATGCGACCGCGAGTTGGTCACACGGCCGCCG
CATCTAGAAAACCGGACGAACATGGTGACCCAAACGGACCAAAAACAAACGTCCGTTTGGGCCGTGCCTTGGAGTTGGCC
TGAGCGCGTTGAAAGGTTCGTAGGCGGAAATAGCTGAAGCAAAAACCGGCCCCGCCGCCTCCCTGTGTAGAGACCTGTGC
CGCCGACGCCAAAGCGGCAAGCCGGCAAACCTGCTTCTCATCCCTCCAACCCCCCAATGCCGCCGGCGAACCTCACCCCG
ACTAAATGGCCCAAGAACCTCACCGCCGAACACCTCCACCGCCTTGTCCGCGCCGAGCGTGATCCCCGCCGCGCGCTCGC
CCTCTTCGACGCGGCCACCGCCGCGCCCGTCTCCACTTCCGCGCCCACACAAATCCTCCCCTCCCCGGACACCGTCTCCC
TCCTCACCTCCCGCCTCGCCTCCGCCGGCCTCCTCCCCCTCGCCACCTCCCTCCTCTCCCGCTCGCGCGCGCTCTTCCCC
TCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCCCCCTCCGCCCTCTCTCTCCCCCACTCCGCCCGCTCCTACACCGCCGTCCTTGCGGGCCTCGTCGC
GCACTCCCATCTCCCCCTCGCCCACTCCCTCCTCGCCGACATGCGCGCCGCCGGCTTCGGCCCCACCACCGCCACCTACA
ACGTCCTCCTCAAGGCCCACTGCTCTGATGCCGACGCTCCTATCGACCACGCGGTCCGCCTTTTCCGCAACATCCCCAAA
CCTGACGCCTGCTCCTACAACACCGTCATCGACGGGCTCTGCCGCCGCAGCCGCAGGGCCGAGGCCCAGGAGCTGTTCTC
CGAGATGGTAGAAAATGGCGTTGCGCCCACAGTGGTTACTTACACGACTATCATCAATTGGCTCGCACGGGAGGGCTGCT
TGGACGATGCACTGGAGATGTTTGACGAAATGGGAAGGAGAGGTATTGCACCCAATGTTATTACATATAGTTCTCTGATT
GATGGTTTGTGCAAGGGTGGGCGTGCATCATCAGCACTGGACTTGTTGGAGAGGTTGACCAAGGAGGTGAAGCTGCCAAA
TACAATCATATATAGTTCTGTCATTAATGGCCTCTGTAAGGAGGGCCTGCTGAGGGAGGCAATGGAGGTTTTGGACCGGA
TGCGTCTCCAGGGGAGGAAGCCTGATGCTGGATTGTTTGGGAAGCTCATTGTTGGGCTGTCTGATGCAGGAAGGGCTGTG
GAGGCTGCAAATTACTTGGATGAGATGGTTCTTGCTGGCGTTCAACCGAACCGGGTGACTTGGAGCCTTCATGTCAGGAT
AAACGTTGCAGTGGTGACAGCATTATGTGTTAAGGGTGAAGTTGGGAGGGCTTTCCAGGTGTACCAGAGCATGAGGACTC
GTGGCATTTCTACCGAGCCAAGCATTTTCCATCTCCTGGTTGAGTTCTTCTGCAAAAAGAACCATTTGGAGAAAGCAGCT
TGTGTTGTGCTTGACATGTTGTCAGAGAGGTGCATCCCTGAGAGGGAAACATGGGATGTTATTGTCAGCGGGTATTGGAG
TAAGAAGAAAGTCAGACAAGAAGCTGAGCAAATATGGAACCAATTAGCAGTTATCTGATTGAAAATAAAAATAAATGTTG
TGCTACACTGTGCTGGTCGGACCCTTCCCCGGACTCTGCATAAGCGGGACC-ACATGCACCAGGCTGTCCCCCTGCTACA
CTGTGCTGGTACATGATCCGCCTAAGACTTATCAAGCAAAAATTGTGAACCGACACACTTGTTCCGTCATGGGGTTGCAC
AAGTGAGAGAGTT-TTGCT-ACCAAACCCCTTAAACTCCAGTGCTTCCATGTCCAGGATATGCGAAGTACTAATATTTAT
TGTATGAATAATTTTTGAAGTGACAAGCATGCGGGCAGTGTTCAGGTACGATGTGGGGTTGTCTTCCATATCTCTTGTTT
TTGTATGTATAGAGATACATACACGCGCTCTGCTGAAGTTCATTTCTATTCTTGTCATGTGTCTTCTGTTTCCTTATTTC
GTCGACCAAAATGTTTGTTCAGGGTTATTGCATGACGACTTAAAAGCTGCGTGGTATGACTTCAAGAATACACTGTCTGA
TATGATTTTTAAAGTCTCCTTTCCTAGACATGTTAATTTTGGAAAAACTAGCAAATTACAATACAAAACTTAACTACATA
TATGTATGAAGATTCAAGACAAAAACAAGCTATCGACTCCTGGTATATTGCTTCTTTCCCAATTAATGAAGACTTTTTTC
CATGCCTGCCGCGTATTTGATTCCATCCATGTATCGACTTTCCCTCCTATGCTCTGAGTTCGAGTATCAATAAGAATACG
AGTTCATATTGTTCCTATGTTATGGTATAAATATACATGATGGATGAGGTTCCGTGGATAGAGAGCCAATTCCAGTAGAC
TTATGGAACGTTCCTGTTCACGTGCATCCAGTAGGAATTGAACCCTCAAATTTACCAATTATGAGTTGGGCGCTTTAACC
ATTCAACCAAAAGTCTTAGTTGTATCATATGAAAGATTTAAAAAATTGTGGTATGTGCCAAAGATGTATCCAATATATTA
TCCTGCCAGTTGCCAGCACTGTTCATTTCTGA
>chr3A_160
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-------------------------------------------------------------------------------C
TGAGCGCGTTGAAAGGTTTGTAGGCGGAAATAGCTGAAGCAAAAACCGGCCCCGCCGCCTCCCTTTGTAGAGACCTCTGC
CGCCGACGCC-AAGCGGCTAGCCGGCAAACCTGCTTCTCATCCCTCCAT-CCCCCAATGCCGCCGGCGAACCTCACCCCG
ATCAAATGGCCCAAGAACCTCACCGCCGAACACCTCCACCGCCTTGTCCGCGCCGAGCGTGACCCCCGCCGCGCGCTCGC
CCTCTTCGACGCGGCCACCGCCGCGCCCGTCTCCACTTCCGCGCCCACACAAATCCTCCCCTCCCCGGACACCGTCTCCC
TCCTCACCTCCCGCCTCGCCTCCGCCGGCCTCCTCCCCCTCGCCACCTCCCTCCTCTCCNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNN------------------------------------------------------------
--------------------------------CCCCCACTCCGCCCGCTCCTACACCGCCGTCCTTGCCGGCCTCGTCGC
GCACTCCCATCTCCCCCTCGCCCACTCCCTCCTCGCCGACATGCGCGCCGCCGGCTTCGGCCCCACCATCGCCACCTACA
ACGTCCTCCTCAAGGCCCACTGCTCTGATGCCGACGCTCCTATCGACGACGCGGTCCGCCTTTTCCGCAACATCCCCAAA
CCTGACGCCTGCTCCTACAACACCCTCATCGACGGGCTCTGCCGCCGCAGCCGCAGGGCCGAGGCCCAGGAGCTGTTTTC
CGAGATGGTAGAAAATGGCGTTGCGCCTACAGTGGTTACTTACACGACTATCATCAATTGGCTCGCACGGGAGGGCTGCT
TGGATGATGCACTGGAGATGTTTGACGAAATGGGGAGGAGAGGTATTGCACCTAATGTTGTCACCTATTGTTCTCTGATT
GATGGTTTGTCCAAGGGTGGGCGTGCAGCATCAGCACTGGACTTGCTGGAGAGGTTGGCCAAGGAGGTGAAGCCGCCAAA
TACAATCATATATAGTTCTGTCATTAATGGCCTCTGTAAGGAGGGCCTGCTGAGGGAGGCAATGGAGGTTTTGGACCGGA
TGCGTCTCCAGGGGAGGAAGCCTGATGCTGGATTGTTTGGGAAGCTCATTGTTGGGCTGTGTGATGCAGGAAGGGCTGTG
GAGGCTGCAAATTACCTGGATGAGATGGTTCTTGCTGGCGTTCAACCGAACCGGGTGACTTGGAGCCTTCATGTCAGGAT
AAACGTTGCAGTGGTGACAGCATTATGTGTTAAGGGTGAAGTTGGGAGGGCTTTCCAGGTGTACCAGAGCATGAGGACTC
GTGGCATTTCTACCGAGCCAAGCACCTTCCATCTCCTGGTTGAGTTCTTCTGCAAAAAGAACCATTTGGAGAAAGCAGCT
CGTGTTGTGCTTGACATGTTGTCAGAGAGGTGCATCCCTGAGAGGGAAACATGGGATGTTATTGTCAGTGGGTATTGGAG
TAAGAAGAAAGTCAGACAAGAAGCTGAGCAAATATGGGACCAATTAGCAGTTATCTGATTGAAAATAAAAACAAATGTGG
TGCTACACTGTGCTGGTCGGACCCTTCCCCGGACTCTGCACAAGCGGGAGCTACATGCACCAGGCTGTCCCCCTGCTAGA
CTGTGCTGGTACATGATCTGCCTAAGACTTATCAAGCAAAAATTGTGAACCGACACACTCGTTCCATCATGCGGTTGCAC
AAGTGAGAGAGAGTTCTGCCACCAAAACCCTTAAACTCCAGTGCTTCCATGTCCAGGATATGCGAAGTACTAATATTTAT
TGTATGAATAATTTTTGAAGTGACAAGCATGCGGGCACTGTTCAGGTACGATGTGGGGTTGTCTTCCATATCTCTTGTTT
TTGTATGTATAAAGATACATACACGCGCTCTGCTGAAGTTCATTTCTATTCTTGTCATGTGTCTTCTGTTTCCTTATTTC
GTTGACCAAAATGTTTGTTCA-GGTTATTGCACGACGACTTAAAAGCTGTGTGGTATGACTTCAAGAATGCA--GTCTGA
TATGATTTTTAAAGTCTTCTTTTCTAGACATGTTAATTTTGGAAAAACTAGCAAATTACAATACAAAACTTAACTACATA
TATGTATGAAGATTCAAGGCAAAAACAAGCTATCAACTCCTGGTATATTGCTTCTTTCACAATTAATGAAGACTTTTTTC
CGTGCCTGCCTAGTGTTTGATTCCATCCATGTATCGACTTTCCCTCCTATGCTCTGAGTTCGAGTATCAATAAGAATTCG
AGTTCATATTGTTCCTATGTTATGGTATGAATATACATGATGGATGAGATTCCGTGGATAGAGAGCCAATTCCAGTAGAC
TTATGGAACGTTCCTGTTCACGTGCATCCAGTAGGAATTGAACCCTCAAATTTACCAATTATGAGTTCGGCGCTTTAACC
ATTCAACCAGAAGTCTTAGTTGTATCATATGAAAGATTTAAAAAATTGTGGTATGTGCCAAAGACGTATCCAATATATTG
TCCTCCCAGGTGCCAGCACTGTTCATTTATGA
>chr3D_160
CTGT----------------------------------------------------------------------------
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---GCGCGTTGAAAGGTTTGTAGGCGGAAATAGCTGAAGCAAAAACCGGCCCCGCTGCCTCCCTTTGTAGAGACCTCTGC
CGCCGACGCCAAAGCGGCAAGCCGGCAAAGCTGCTTCTCATCCCTCCAACCCCCCAATGCCGCCGGCGAACCTCACCCCG
ACTAAATGGCCCAAGAACCTCACCGCCGAACACCTCCACCGCCTTGTCCGCGCCGAGCGTGACCCCCGCTGCGCGCTCGC
CCTCTTCGACGCGGCCACCGCTGCCCCCGTCCCCACTTCCGCGCCCACACAAATCCTCCCCTCCCCCGACACCGTCTCCC
TCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNN--------------------------------------CCGTCCTTGCCGGCCTCGTCGC
GCACTCCCATCTCCCCCTCGCCCACTCCCTCCTCGCCGACATGCGCGCCGCCGGCTTCGGCCCCACCACCGCCACCTACA
ACGTCCTCCTCAAGGCCCACTGCTCTGATGCCGACGCTCCTATCGACGACGCGGTCCGCCTTTTCCGCAACATCCCCAAA
CCTGACGCCTGCTCCTACAACACCCTCATCGACGGGCTCTGCCGCCGCGGCCGCAGGGCCGAGGCCCTGGAGCTGTTCTC
CGAGATGGTAGAAAATGCCGTTGCGCCTACAGTGGTTACTTACACGACTATCATCAATTGGCTCGCACGGGAGGGCTGCT
TGGATGATGCACTGGAGATGTTTGACGAAATGGGGAGGAGAGGTATTGCACCTAATGTGGTCACCTATAGTTCTCTGATT
GATGGTTTGTGCAAGGGTGGGCGTGCAGCATCAGCACTGGACTTGCTGGAGAGGTTGGCCAAGGAGGTGAAGCCGCCAAA
TACAATCATATATAGTTCTGTCATTAATGGCCTCTGTAAGGAGGGCCTGCTGAGGGAGGCAATGGAGGTTTTGGACCGGA
TGCGTCTCCAGGGGAGGAAGCCTGATGCTGGATTGTTTGGGAAGCTCATTGTTGGGCTGTGTGATGCAGGAAGGGCTGTG
GAGGCTGCAAATTACCTGGATGAGATGGTTCTTGCTGGCGTTCAACCGAACCGGGTGACTTGGAGCCTTCATGTCAGGAT
AAACGTTGCAGTGGTGACAGCATTATGTGTTAGGGGTGAAGTTGGGAGGGCTTTCCAGGTGTACCAGAGCATGAGGACTC
GTGGCATTTCTACTGAGCCAAGCACTTTCCATCTCCTGGTTGAGTTCTTCTGCAAAAAGAACCATTTGGAGAAAGCAGCT
CGTGTTGTGCTTGACATGTTGTCAGAGAGGTGCATCCCTGAGAGGGAAACATGGGATGTTATTGTCAGTGGGTATTGGAG
TAAGAAGAAAGTCAGACAAGAAGCTGAGCAAATATGGAACCAATTAGCAGTTATCTGATTGAAAATAAAAATAAATGTGG
TGCTACACTGTGCTGGTCGGACCCTTCCCCGGACCCTGCACAAGCGGGAGCTACATGCACCAGGCTGTCCCCCTGCTACA
CTGTGCTGGTACATGATCCGCCTAAGACTTATCAAGCAAAAATTGTGAACCGACACACTTGTTCCATCATGGGGTTACAC
AAGTGAGAGAGTTGTTGCT-ACCAAAACCCTTAAACTCCAGTGCTTCCATGTCCAGGATATGCGAAGTACTAATATTTAT
TGTATGAATAATTTTTGAAGTGACAAGCATGCGGGCAGTGTTCAGGTACGATGTGGGGTTGTCTTCCATATCTCTTGTTT
TTGTATGTATAGAGATACATACACGCGCTCTGCTGAAGTTCGTTTCTATTCTTGTCATGTGTCTTCTGTTTCCTTATTTC
GTTGACCAAAATGTTTGTTCAGGGTTATTGCACGACGACTTAAAAGCTGCGTGGTATGACTTCAAGAATGCACTGTCTGA
TATGATTTTTAAAGTCTTCTTTTCTAGACATGTTAATTTTGGAAAAACTAGCAAATTACAATAGAAAACTTAACTACATA
TATGTATGAAGATTCAAGAATAAAACAAGCTATCGACTCCTGGTATATTGCTTCTTTCCCAATTAATGAAGACTTTTTTC
CGTGCCTGCCACG-------------------------------------------------------------------
------TATTGTTCCTATGTTATGGTATGAATATACATGATAGATGAGATTCTGTGGATAGAGAACCAATTCCAGTAGAC
TTATGGAACGGTCCTGTTCACGTGCATCCAGTAGGAATTGAACCCTCAAATTTACCAATTATGAGTTGGGCGCTTTAACC
ATTCAACCAAAAGTCTTAGTTGTA-CATATGAAAGATTTAAAAAATTGTGGTATGTGCCAAAGACGTATCCAATATATTG
TCCTGCCAGGTGCCAGCACTGTTCATTTCTGA
>SNPs
-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
------------------S---------------------------------------------S-----------S---
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-----------------------------------------------------------SSSSSSSSSSSSSSSSSSSSS
SS------------------------------------------------------------------------------
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-------------SSSSSSSSSSSSSSSSSSS------------------------------------S-----------
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-----------------------------------------------S--------------------------------
------------------------S-------------------------------------------------------
---------------------------S----------------------------------------------------
----S-----------------------------S-----------------S------S-S--S---------------
---------------------------S-----------------S-----------S---------------S------
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------------------------------------------------------------S-------------------
---------------S----------------------------------------------------------------
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------------------------S-------------------------------------------------------
S-------------------------------------------------------------------S-----------
------------------------------------------------------------------------------S-
----------------------------------------S--------S------------------------------
-----------------------------------------------------------------S--------------
--------------------------S-----------------------------------------------------
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--S-----------------------------S------------------------------------S----------
-----------------S----S---------------------------------------------------------
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-S--------S---S--------------------------------------------------------------S--
----------------------------S-------------------S-------------------------------
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----------------------------------------------------------------S--------------S
---------S----------------------
>forward_108
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--------AAACCGGACGAACATGGTGA----------------------------------------------------
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>reverse_1999
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------------------------------------------------------------------------------TG
TGCTACACTGTGCTGGTC--------------------------------------------------------------
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