>input_sequence_63687
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----------------------------------------ATGGTCGCCGCACCGGCAGGCCCGGGAGGTGGAGGTCCGT
CTCTCTCTCCGTGCGCCGGCTTCGTCGCGGACTCCCTGATCCTCCCCACCCGGAACGTCAGGCTCTTCGCGCCGGTCTTG
GCGCTCGTCCTCGCCCACACCTTCCTCTTCCTCGCCGTCGCCGTCCACTTCGCCCACGAGTACGCCCTGTCGGGCCCCAC
GATCTGGTTGCACCCAGCGGCGCTGCTCGTCCTCCACCTAGCGTACCTCGCCAGCAAGCTCGCCACGCAGGCCGCCGTCG
CGCTCGCCGCCTGCGCCACGCTCCGCGGCGACCGGCCGCGCTCGCTCGCCGAGCTCGTGCGCGGCACCCCCCGGCCACGC
GGCATCTTCGCCTGCGCCGCGCTGGTCGCCGCCGCGGAGCTCGCGTCGACGGCCGTCCCGGCGTACTACCTCGACTCCTG
GTACAGGTACAGCTGGAGCCACTCGGACACCGGCGGCGTGGAGTCGTTCGTGCAGGGCGTCCTGCTGTTCGTCTTCCTCG
CCACGCTCCTCCTCCGCCTCTTCCTCGCCGCGGTCTTCCCGGTCGCCATCGCCGCGTCGGCGACGGCGGCGGCAGAGGAA
GGCGGCGACGGTGGTGGCGGCGCGAGCGCGGCCGCTCATCTCCAGCGCGCGTGGCGGCTCATGACCGCGGCCGCGAGCTG
GAAGGAGGCCGCCCTGCAGGTGCTCGTGGTGAGCGTCGTGCTGCCACTGGCCACCTACCCGGTGTACGCGTTTGCTCTGG
ACTGCGGGCAGGGCGGGTGCGTGCTTTTGCTGGGCAGCCTGTACGGGTTCCTTCTGCCGTCCGCCGGTGTGCAGCTCTAC
TCCACGGTGGCCGCCACCGTGTTCTACCACCGGGGCATGGAGCAGCAGCGTCGTCGTGATCTCGCCATTCCACTGATGAT
GAAGGACATGAAGCTAGGAGGTACCCCGCTAAATTCTCTGAAATTGATTAAGGGTGCGACGATCGCCTGA----------
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>chr3A_1_TraesCS3A01G445300
TTTCTAAATTTGTTCATGATTTTATAAAAGAATTTTTGTTTCAATATTTGTTCATGATTTCATAATATGTTCGTGTTTCA
AAAAAATGTTCAACGATTTCAAAAAATGTTCTTCTCTTGAAAATATGTCAG-AATTTTCATTAAATGTTTTTTGTTTCAT
AAAATGTCTAGGAATTTCAAAAAAGTTCTGGTTTTCAAATTATTGTTCACAACTTAAGAAAATGTTCGTGTTTCAAAAAG
TGTTTAGGAATTTCAA----------------------------------------------------------------
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------------------------------------------------------------AAAATGTTCGCGTTTGCAAC
ATTATGTTCCAAATCGCAAAAAATGTCCCCATGTTTCTAAATTTATGTTCAAAAAACAATTTGAGGTGATTATTTGTGAG
AAAAATAAAATTTAAAAGGGGGGGGGGGTCGCAAAAAAACAGGTCACATGCCCTGGTCACTGCCTCCCTGATGGGTGGGC
CCTGCATCATGCTGGCTCGCCACATCAACACGATGTACATATACAAGCGTGGTTAACACCGTAGATGCACGCTCAAGCCA
AATTTTATCACCGATTCGATGTACTATGCCGTAAGTTTTAGCACCAAACTGATTTTTCTTTTCAAGTTCAGGCACCTGTG
ATGTAATTGACTCCATTAAGAACTCTCAACCTCCGGCCTCCAACGTGCAACAGAATTGCTCGAGGTTCCATCCAAACGGA
GACAAAAAGGAAACTAGAGGCACGGATGATGACCATCGACCCGAATAAGCCATGGCGTCATGCCGCGGAAAAGGACAAGG
AAGGAGAAGAAAATGATGAGCAGATGCCTCGACCGCTCCGCTCGCGAAGAAACC-AAACAGCACGGCATACCGCAACATA
ATTTCCTCCGCCCACTCAGTTGACTGACCAA---------------TTCCATCCCAAGTCGTCTCATGAGAATCTTCTTC
TCCGGTGACCACCCGCCTCTCGACCATCGACAAGCC--------ACAAGCGCACACTCTCAGCAGCCAAACCCCC-----
------TAGCTAGCTAGTAACCAGACCAGTTCGTCCCACCATGGTCGCCGCACCGGCAGGCCCGGGAGGTGGAGGTCCGT
CTCTCTCTCCGTGCGCCGGCTTCGTCGCGGACTCCCTGATCCTCCCCACCCGGAACGTCAGGCTCTTCGCGCCGGTCTTG
GCGCTCGTCCTCGCCCACACCTTCCTCTTCCTCGCCGTCGCCGTCCACTTCGCCCACGAGTACGCCCTGTCGGGCCCCAC
GATCTGGTTGCACCCAGCGGCGCTGCTCGTCCTCCACCTAGCGTACCTCGCCAGCAAGCTCGCCACGCAGGCCGCCGTCG
CGCTCGCCGCCTGCGCCACGCTCCGCGGCGACCGGCCGCGCTCGCTCGCCGAGCTCGTGCGCGGCACCCCCCGGCCACGC
GGCATCTTCGCCTGCGCCGCGCTGGTCGCCGCCGCGGAGCTCGCGTCGACGGCCGTCCCGGCGTACTACCTCGACTCCTG
GTACAGGTACAGCTGGAGCCACTCGGACACCGGCGGCGTGGAGTCGTTCGTGCAGGGCGTCCTGCTGTTCGTCTTCCTCG
CCACGCTCCTCCTCCGCCTCTTCCTCGCCGCGGTCTTCCCGGTCGCCATCGCCGCGTCGGCGACGGCGGCGGCAGAGGAA
GGCGGCGACGGTGGTGGCGGCGCGAGCGCGGCCGCTCATCTCCAGCGCGCGTGGCGGCTCATGACCGCGGCCGCGAGCTG
GAAGGAGGCCGCCCTGCAGGTGCTCGTGGTGAGCGTCGTGCTGCCACTGGCCACCTACCCGGTGTACGCGTTTGCTCTGG
ACTGCGGGCAGGGCGGGTGCGTGCTTTTGCTGGGCAGCCTGTACGGGTTCCTTCTGCCGTCCGCCGGTGTGCAGCTCTAC
TCCACGGTGGCCGCCACCGTGTTCTACCACCGGGGCATGGAGCAGCAGCGTCGTCGTGATCTCGCCATTCCACTGATGAT
GAAGGACATGAAGCTAGGAGGTACCCCGCTAAATTCTCTGAAATTGATTAAGGGTGCGACGATCGCCTGAAGAGTCTATG
ATGAATAGCGATCT----GCTCTGATTCGCCTGGAAGAATCCGACATTCCTAATGTTCCTCCTGTCCGAGCAGCTCGGGT
GCAAATTTATGGCCATGCAGATAGTGGAAATGGCA-----------CTCGCTTTGTTCAGGTTTCAGT-AAATTTCCAGG
TCCGCCATTCGTGAGCTGCCC--------------------------------------------------------AGT
TGCAGTCCAAACTTCAGAAGTCGTGTGGCTCATCCTAAAAAAG-AAAATCTTATGATGTACTCTCTCCATTCTGAATTAC
TTGTCGCAAGTATGGATGTATCTAGATGTATTTTAGTTCTAGATACATCCATTTCTGCGACGAGTAATTTGGAACGGATG
GAGTATACAAATACAATGATTGTGTTGTACTCCCTCCGTTCCAAATTACTCGTTGTGGTTTTAGTTCAAATTTTGAACTA
AAATCACGACGAGTTTTAGTTCAAATTTTGAACTAAAACCACGACGAGTAATTTGGAACGGAGGAAGTATGAAATAAGTT
GAATGATCATGGCATAATCACAGAATCTTGAGAAATATGCAATGCGGTTACTGAAAATTGCAGTTTGTGTTCAGTGCAG-
---TTCTCACTGTCAGTTTTTTTGAAGAAGGCCATCATTCACTTAAAATCGTTAGAATTTGTGTTCAGTGCTCTGTATCC
ACTGTGCTGCTGAAGCCAGTAAAACTTTACAATGCTCCCAAACAGGGCCCTTGAATAGTTGAATGATATGCTTCCAATGC
TAGAAACCTGGACTCGGGCAGTTAAACAGAATTGTTCAACAGCTCAGCTAAAGAATTTTGGTTGGACTTTTGGCTCCGAC
TAATA----ACAAATATATTACGAGCGAAGCAAGAAAATACCGGAATCAAACCACAAGCACGGACAAGCATTGGCCACAG
AAATAAAACCGAATGGAGCTGAGCCTACACAAGTTCCACACAAATCAATCCAGAAAATCATTTTTGGCATAA-------T
TCTCACAGATCAATTCAACAAGCTCCTTGATCACCATT
>chr7B_14
-------------TCATGATTTCATAAAAGATTTGTGTTTCCA-TATTTGTTCATGATTTCATAATATGTTCGTGTTTCA
AAAAAAGTTTAGG-GATTTCAAAAAATGTTCTCGTCTCCAAAATATGTTCACAATATTCATTAAATGTTTTGTGCTTCAA
AAAATGTCCAGGAATTTGAAAAGATTTCTTGTTTTCAAATTTTTGTTCACAACGA---AAAATGTTCATGTTTCAAAAAA
TGTTTAGGAATTTCAATAATGTTTGTGTTTTCAACATTTGTTCAGGATATTAAAAAATGTGCAGGGATTTAATTAAATAT
TATTATTTTCTAAGAAAATCATGATTTCATAAAAGAATTTGTGTTTCCATATTTGTTCATGATTTCATAATATGTTCATG
TTTCAAAAAAAACACGGATTTCAAAAATGTTCACCTCTTCAAAATTTGTTCACAATTTTCATTAAATATTTTGCGTTTCA
AAATATGTCCAGGAATTTCAAAAAAGTTCTCGTTTTCAAATTTTTGTTCACAACTTAAGAAAAATGTTCACGTTTTTAAC
ATTTTGTTCCAAATTTC---------------------------------------------------------------
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-------AGAAAATGT----------------------------------------------------------------
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>chr3D_607
TCCTTAAA------------------------------------------------------------------------
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--------------------AACTCTCAACCTCAGACCTCCAGCGTGCAACAGAATTGCTCAAGGTTCCATCCAAACGGA
GACAAAAAGGAAACGAGAGACGCGGATGATGATCATCCACCCGAATAAGCCGTGCCGTCATGCCGCGGGAAAGAACAAGG
AAGGAGAAGAAAATGATGGGCGGATGCCTCGACCGCTCCGCTCGCGAAGAAACC-AAACAGCACGGCATACTGCAACATA
ATTTCCTCCACCCACTCAGTTGACTGACCAACCAAAGACTCCAGACTTCCATCCCAAGTCGTCTCATGAGAATCTTCTTC
TCCGGTGACCACCCGCCTCTCGACCATCGACAAGCC--------ACAAGCGCGCTCTCTCGGCGACCAAGCCCCCTAGCT
AGCCGCTAG-----------CCAGACCAGTTCGTCCCACCATGGTCGCCGCACCGGCGAGCCCG------GGAGGTCCGC
CCCTCTCTCCGTGCGCCGGCTTCGTCGCGGACTCCCTGATCCTCCCCACCCGGAACGCGAGGCTGTTCGCGCCGGTCTTC
TCGCTCGTCCTCGCCCACACCTTCGTCTTCCTCGCCGTCGCCGTCCACTTCGCCCACGAGTACGCCCTGTCGGGCCCCAC
GATCTGGCTGCACCCAGCGGCGCTGCTCGTCCTCCACCTCGCCTACCTCGCCAGCAAGTTCGGGACGCAGGCCGCCGTCG
CGCTCGCCGCCTGCGCCACGCTCCGCGGCGACCGGCCGCGCTCGCTCGCCGAGCTCGTGCGCGGCACCCCCCGGCCACGC
GGCATCTTCGCCTGCGCCGCGCTGGTCACCGCCGCGGAGCTCGCGTCCACGGCCGTCCCGGCGTATTACCTCCACTCCTG
GTACAGGTACAGCTGGAGCCACTCGGACACCGGCGGCGTGGAGTCGTTCGTGCAGGGCGTCCTGCTGTTCGTCTTCCTCG
CCACGCTCCTCCTCCGCCTCTGCCTCGCCGCGGTCTTCCCGGTCGCCATCGCCGCGTCGGCGACGGCGGCGACAGAGGAA
GGCGGGGACGTCGGTGGCG------GCGCGGCCGCTCATCTCCAGCGCGCGTGGCGGCTCATGACCGCGGCCGCGAGCTG
GAAGGAGGCCGCCCTGCAGGTGCTAGTGGTGAGCGTCGTGCTGCCCCTGGCCACCCACCCGGTGTACGCGTTTGCACTGA
ACTGCGGGCAGGGCGGGTGCGTGCTTTTGCTCGGCAGCCTGTTCGGGTTCCTTCTGCCGTCCGCCGGCGTGCAGCTCTAC
TCCGCGGTGGCCGCCACCGTGTTCTACCACCGGGGCATGGAGCAGCAGCGTCGTCGTGATCTTGCCATTCCACTGATGAT
GAAGGACATGAAGCTAGGAGGTACCCCGCTAAATTCTCTGAAATTGATTAAGGGTGCGA---TCGCCTGAAGAATCTATG
ATGAATAGCGATCTGCGCGCTCTGATTCGCCTGGAAGAATCCGACATTCCTAATGTTCCTCCTGTCCGAGCAGCTCGGGT
GCAAATTTATGGCTATGTAGATAGTGGAAATGGCA-----------CTCACTTTGTTCAGGTTTCAGT-AAATTTCTAGG
TCCGCCATTCGTGAGCTGCCC--------------------------------------------------------AGT
TGGAGTCCAAACTTCACAAGTCGTGTTGCTCATCCTAAAAAAGAAAAATCTTATGATGTATACAAAT-------------
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----------ACA-------------------------------------------------------------------
--------------------------------------------------------------------ATGAAATAAGTT
GAATGATCATGGCATAATCATAGAATTTTGAGAAACATGCAATGCGGTCGCTGAAAATTGCAGTTTGTGTTCAGTTCGGT
TAATTCTCACTGTCAGGTTTTTCGACGAAGGCCATCATTCACTTCAAATCGTTAGTATTTGTGTTCAGTGCTCTGTATCC
ACTGTGCTGCTGAAGCCAGTAAAACTTCACAATGCTCCCTAACAGGGCCTTG--------GAATGATATGCTTCGAATGC
TAGAAACCTGGACTCGGGCAGTTAAACAGAATTGTTCAACAGCTCAGCTAAAGAATTTTGGTTGGTCTTTTGGCTCCGAC
TAATA----ACAAAT-----------------------------------------------------------------
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>chr3B_664
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--------------------------------------------------------------------CATCCAAACGGA
GACAAAA-GGAAACGAGAGGCACGGATGATGATCATCCACCCGAATAACC-------TCATGCCGCGGAAAAGAACAAGG
AAGGAGAAGAAAATTATGAGCGGATGCCTCGACCGCTCCGCTCGCGAAGAAACCCAAACAGCACGGCATACCGCAACATA
ATTTCTTCCACCCACTCAGTTGACTGACCAACGGAAGACTCCAGATTTCCATCCCAAGTCGTCTCATGAGAAACTTCTTC
TCCGGTGACCACCCGCCTCTCGACCATCGACAAGATACATTACTACAAGCGCACTCTCTCTGCGACCAAACCCCC-----
------TAG-----------CCAGACCAGTTCGTCCCACCATGGTCGCCGCACCGGCAGGCCCGGGAGGTGGAGGTGCGC
CCCTCTCTCCGTGCGCCGGCTTCGTCGCGGACTCTTTGATCCTCCCCACCCGGAACGCCAGGCTCTTCGCGCCGGTCTTC
GCGCTCGTGCTCGCCCACACTTTCGTCTTCCTCGCCGTCGCCGTCCACTTCGCCCACGAGTACGCCCTGTCGGGCCCCAC
GATCTGGCTGCACCCAGCGGCGCTGCTCGTCCTCCACCTAGCCTACCTCGCCAGCAAGCTCGCCACGCAGGCCGCCGTCG
CGCTCGCCGGCTGTGCCACGCTCTGCGGCGACCGGCCGCGCTCGCTCGCCGAGCTCGTGCGCGGCACCCCCCGGCCCCGT
GCCCTCTTCGCCGGCGCCGCGCTGGTCGCCGTCGCGGAGCTCGCGTGCACGGCCGTCCCGGCGTATTATCTGGACTCTTG
GTACAGGTACAGCTGGAGCCACTCCGACACCGGCGGCGTGGAGTCGTTCGTGCAGGGCGTCCTGCTGTTCGTCTTCCTCG
CCACGCTCCTCTTCCGCCTCTGCCTCGCCGCGGTCTTCCCGGTCGCGGTCGCCGCGTCGGCGACGGCGGCGACAGAGGAA
GCCGGCGACGGTGGTGGCGGCGCGAGCGCGGCCGCTCATCTCCAGCGCGCGTGGCGGCTCATGACCGCGGCCGCGAGCTG
GAAGGAGGCCGCCGTGCAGGTGGTCGTGGTGAGCGTCGTGCTGCCCCTGGCCACCTACCCGGTGTACGCGTTTGCTCTGG
ACTGCGGGCAGGGCGGGTGCGTGCTTTTGCTCGGCTGGATGTACGGGTTCCTTCTGCCGTCCGCCGGCGTGCAGCTCTAC
TCCACGGTGGCCGCCACGGTGTTCTACCACCGGTGCATGGAGCAGCAGCGTCA---TGAGCTTGCCATTCCACTGACGAT
GAAGGTCATGAAGCTAGGAGGTACCCCGCTAAATTCTCTGAAATTGATTAAGGGTGGGA---TCGCCTGAAGAATCTATG
ATGAATAGCAATCTGC----TCTGAATCGCCTGGAAGG---------------------------------AGCTCGGGT
GCAAATTTGTGGCTATGTAGATAGTGAAAATGGCATATTAGGCACTCTAGCTTTGCTCAGGTTTCAGTAAAATTTCTAGG
TCCGCCATTGGTGAGCAGATTTTAGTTTCAGCTCAATAAGGCATTAATATCTCCCTCCTCATGGAACCGCTTGTCAGAGT
TGCAATCCAAACTTCAAAAGTCGTGTTGCTCATCCTAAAAAAT-----TCTCATGATCTATATGACT-------------
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----------ATATAATGACTGTGTT------------------------------------------------------
------------------------------------------------------------------GTATGAAATAAGTT
GAATGATCATGGCATAATCATAGAATCTTGAGAAATATGCAATGCGGTTACTGAAAATTGCAGTTTGTGTTCAGTGCAG-
---TTCTCACTGTCAGGTTTTTCGAGGAAGGCCATCATTCACTTAAAATCGTTAGTATTTGTGTTCAATGCTCTGTATTC
ACTGTGCTTCTCGAGTCAGCAAAATTTTACAATGCTCCCAAACAGGGGCTTG--------GAATGATTTGTTTCCAAAGC
TTGATACCTGGACTCGGGCAGTTAAAGCAAATTGTTCAAGAGATCAGCTAAAGAATTTGGGTTGGTCTTTAG--------
---------------------AGAGCGACGCAAGAAAATACTGAACCG-AACCAAAACCATGGAAAAACATTGGTCACAG
AAACAAAATCAAATG-----GAGCCTACACAAGTTCCACACAAATCAATCCAGAATTCCAGATAATCACTG---------
--TCATAGATCAATCCAACAAGCTCCTTGATCGCCATT
>chr3D_2473
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-----------------------------------------------------------------AGTACGAAATAAGTT
GAATGATCATGGCATAATCACAGAATTTTGAGAAATATGCAATGTGGTCACTGAAAATTGCAGTTTGTGGTCAGTGCAG-
---TTCTCATTGTCCGGGTTTTCGACGAAGGCCAGCATTCACTTAAAATCGCCAGTATTTGTGTTCAATGCTATGTATTC
ACTGTGCTGCTGAA-TCAGCAAAACTTCACAATGCTCCCAAACAGGGGCTTG--------GGTTTAATTGTTTCCAAAGC
TAGACACCTGGAC-CAGGCACTTAAGGCAAATTGTTCAAGTGGTCAGCTAAATATTTTGGGTTGCTCTTTTGGCTCTGAG
TAATACAGTAATAATATTCTAAGTGTGATGCAAGAACATACTGAATCA-AGCGAAAACAT--GAAAAACATTGGTCCC--
AAAAAAACCCGAATGGAGACGAGACTACACAAGTTCCACATAAATCAATCCAGATAATCATTTTTGGCATAACTCTCATT
TCTCATAGATCAATTCAACAAGCTCCTTGATCGCCA--
>SNPs
-SSS----SSSSS---------S--------S--S-SS--S--S------------------------------------
------SS--SSSS------------------SS---SS---------SSS----S---------------S--S----S
--------S--------S----S-S----S-----------S-----------SSSSS---------S-----------S
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---------------------------------------------------------------------S-----SS---
---S----------SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS-------------S-S------S------------------S------------------
--------------S-----------------S----S-------------S--S------------------S------
---------------------S----------------------------------------------------------
---------S----------------------------------------------------------------------
------------------------------------------------------S-----S--SS---------------
---------SSSSSSSSSSS-----------------------------------------------------------S
-S-------------------------------------------------------S---------------------S
------------------------S-------------------------------------------------------
-------S----------------------------------S-------------------------------------
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-----------------------------------------------S-----------------S--------------
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---------------------S-------------------------------------------------S--------
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---------------------------------------------S----------------------------------
-------------------------------S-----------------------------------S------------
--------------------------------------------------------------S-----------------
-----------------------------------------------------------SSS-----------S------
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-------------S---S----------------------------------------------------------S---
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----------------S---------S---------------------------------SS-SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS---S-----S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------
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----------------S-----S--S-----------------------------S------------------------
-------------------------------------------------S-SSSSSSSSS--------------------
-----------------------------------------------------------------S--------------
-----------------SS--S------S------------S-S-SSSS-----S--S--S---S--S------S-----
---S--------------SS------------------------------------------------------------
-----S--------------------------S-----
>forward_801
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-------------------------------------------------------------TAGATGCACGCTCAAGCCA
A-------------------------------------------------------------------------------
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>reverse_2577
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----------------GAAGTCGTGTGGCTCATCCT--------------------------------------------
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