>input_sequence_63673
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------------------------------------------------------------------------ATGGTCGA
AGCTCTTCAGTTCTGGAGTGATTTGGGGTTCACCAAGGATGATATTGGTAAAGTGGTGAGGAAAAATCCAGATTTGTTGT
TGGAATGGTCTGGTGGGATGCTACGTTCAGTGCTTTCCAGCATGCAGAGGGTGGGATCTGGAAAAAGGGAGTTACTTGAT
CTTTTTCTGAACTACCCCAATCTTAGAAGCGAGGATGTCGGTTGGAACATATCTACGGGAGCACGTTTCTTAGATGACAT
TGGCATGAGCCGTGATGATGTGAAGAAGTTTCTGGATTCTCATGGATGGATATTCGGCGCTGCCCCCATGAAGGCCACGA
GCACCATTCTTGGGCAACTCAATGTGGGGAAGGCACGGCTGCGGAGGATCATAATGGAAGAACCACGTCAGTTGATGAAT
TATAAGATTGGCTCAAAGGTCAGCAGATTACCAAGATGTAAACCTGACCCCTGTGTGAAGGAGAAGAGGGAATTCTTAAG
ACGCATAGGATTTGTTGAAGGCTCGGAAGATATGGAGAAGGCTCTAAAAGCTATCCGTGGAAAAGGCGCCAACCTGCAAG
ATAAATACAACAAATTAGTGGAGAAAGGATTGGACCCAGAAGATGTAGCTCACATGGTGAAGATGGCTCCTCGGATTCTG
AATCAGAAGACGGACGCAATTGCTTATAAGATATCCTTCCTTGTGCATGTGGCGGGTTATCCCCTGAGTCCTCCGGCTGC
TTTCCCACGATACCTAGAATTCACTGTGCACAAAAGCAAACTTAAGATGTTGATGTACAGTTGGCTGCTACAAAGGGGGC
TGGCTGCACCCCAACTTACTCTAAGCACAGTCCTAGCTTCCTCAGAAACAGAGTTCACTAAGGCTCA---TGTATATAAG
GTTCCCATGGGTCGTGAAGTTTGGTGGAAGTTCAAGCAGGAGGGAGGTAGCTTTGGCCAAGAGGAGATCAGATGGCTGCG
ACACAGGGTGCACCTTGGACGATAG-------------------------------------------------------
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>chr1D_1_TraesCS1D01G088500
CCTGGAGTCAGCTCCGTCTGCCGCCACCGGTGGCCGCCGCCATCCCCAGTTGGTCCCAAGGCGGCTGCTGCCATCTCCAC
TTGTCTGACCCCACCATTCACAGCCACCTCCCGGGCGCGGCATAGACGGCCGCTCGCTTCAGGCGCGCTCCTCCAATCGC
GCTTGTTGCGGACGATGGGATGGGCATGGGCAGCCCTCCGGTCCGGAGTTCCAAGGTGGCGCGCCCAATATTCACCGTCC
TCGTCCGGCTGGGTCGGCTCAATTGGCCTCACCATTCGATCGCGGCCATATTCGACAGCTCCCAGTCCCAGCCACGGTGG
GGAGGAGGATGGG------GAT------GAGGCCAGGCAAGAGATGTTGAACAGATGGGTATTCCGCGCCGCACAGACAA
CTTTCAGGGACTACCTCCATGGCAAGCGCGGCTTGTGCCTCAATAACGCCAAGCATATCAGCGAGCGCTCGCCCGTCTTC
CTCGGCGAGCTGCTGGA------GGAGGTGAACAATGCAGTGACGAAGGCTGCTGATCAGGGTGGAGAGGGGGCGAGGTT
GAGGTCGAAAGTGAAGAAGAGGGTCAGCAGGGCGCTGGTCCGATTGTTCCAACGCCGCCCTGTCAACGAGTTCAGGCCCT
TCTTTGAGAGCATTGGCATCAGCCCGAGCGAGTGCGATTCCCTCTTGCCGCAGGATCTCACATTCCTCGCCGATGCCGAG
CTGCTGCTCGAGAGCTACCGTGCACTGTACAGTTATGGAGTTGCGCATGTCAAGATTGGAAAGATATACCGGAAGGCTTC
GGAGGTGTTTAGTCTTGGCCAGGGCGTTCTTGCATCTAAGCTCGAGGCCCTTGAGGGTCTAGGCTTCAGTAAGGCCAGTG
TGATCAAACTAGTGATCTCTACTCCTGCCGTATTGGTTCATGACCCGGCTGTGGAACTGAAGACGATCTTGCAGTGGCTA
GACGACATTGGGATTCAGCC--------------AGTTCTTCACTGAATATCAGTCCTATAATTGGCAAAAGATGGTCGA
AGCTCTTCAGTTCTGGAGTGATTTGGGGTTCACCAAGGATGATATTGGTAAAGTGGTGAGGAAAAATCCAGATTTGTTGT
TGGAATGGTCTGGTGGGATGCTACGTTCAGTGCTTTCCAGCATGCAGAGGGTGGGATCTGGAAAAAGGGAGTTACTTGAT
CTTTTTCTGAACTACCCCAATCTTAGAAGCGAGGATGTCGGTTGGAACATATCTACGGGAGCACGTTTCTTAGATGACAT
TGGCATGAGCCGTGATGATGTGAAGAAGTTTCTGGATTCTCATGGATGGATATTCGGCGCTGCCCCCATGAAGGCCACGA
GCACCATTCTTGGGCAACTCAATGTGGGGAAGGCACGGCTGCGGAGGATCATAATGGAAGAACCACGTCAGTTGATGAAT
TATAAGATTGGCTCAAAGGTCAGCAGATTACCAAGATGTAAACCTGACCCCTGTGTGAAGGAGAAGAGGGAATTCTTAAG
ACGCATAGGATTTGTTGAAGGCTCGGAAGATATGGAGAAGGCTCTAAAAGCTATCCGTGGAAAAGGCGCCAACCTGCAAG
ATAAATACAACAAATTAGTGGAGAAAGGATTGGACCCAGAAGATGTAGCTCACATGGTGAAGATGGCTCCTCGGATTCTG
AATCAGAAGACGGACGCAATTGCTTATAAGATATCCTTCCTTGTGCATGTGGCGGGTTATCCCCTGAGTCCTCCGGCTGC
TTTCCCACGATACCTAGAATTCACTGTGCACAAAAGCAAACTTAAGATGTTGATGTACAGTTGGCTGCTACAAAGGGGGC
TGGCTGCACCCCAACTTACTCTAAGCACAGTCCTAGCTTCCTCAGAAACAGAGTTCACTAAGGCTCA---TGTATATAAG
GTTCCCATGGGTCGTGAAGTTTGGTGGAAGTTCAAGCAGGAGGGAGGTAGCTTTGGCCAAGAGGAGATCAGATGGCTGCG
ACACAGGGTGCACCTTGGACGATAGTTTAATCGAATGCATGAGTTGGCTGC-----TTTTCCCC---TTTCTTTCTACAT
TTCCGGATCGATACAATATTCAGG-----TGCAG--GCCTTCCATAATGCATGCCTCCTCAT----ACATGCC-AGTTCT
CTTTTGGAAGAAACATGTGATAATCCAGTGGGTGATATTTGCAATTTGGGCTCCTTGGGTTACGGTACTGGCATTTGTC-
--------------------------ATCACATTGTGCTTTTGGCGTCATGGTAGTATAG--------------------
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----------------------------TACTATTTTCGAACATGGTGAAAAAGTTTGAACTGGCT--------------
-------------------------------ATTGCGCCACACTAGCCAAACAAAATCTGCACAACAGGAGTATCTGAAA
GTTTTGCAATGCCACTTGGTTAACCATGCCTACCTTAGGTTTTGTTA--TTTCGCAAACTGCTAGTTTAACTGTCAGTTC
TTAGAGAGACAAAGAAACAGAGCAAAGTATATAGCACAGTATCACAC--------CACACTAATTCCACGTACTGACTGC
ACAGCTTCAGATTTACCCCATCTTGGCTCATGTGTTTAGTTTGAGCGTATATGAGACTTTCCTCGCTCCAAGAGTAGGAT
GATATCTTCTTGACAGC---------------------------------------------------------------
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-----------------------CAACTGAACTAACTTCTTTATTGAGGACGTGATCTGAAACAACAACAATGGCTCTGT
TTGAAACATTAAACTAAGGTCAAACCTG-------------------------------------------------AAG
TAAGAACGTCATCTGTTTCCACACTACTCGAGAGCGGCCTCACCTGAACCATGAATATATACATCATCATTTAATTCACT
AAGCTCCCTGGGATTGGAGCTCCCAGGATTGATTGAGTCTTTGGATTTTCGTCGATGTGCATGATTTTGACCGGATCGTG
GGAAACTGCTGGGCCCATTTGGTCAGAGGCTGGACGGTGTGG-------------------------------ACTGTGT
GGGGACTCGACTACCAGTGGCTGTGGAAACTGTTTTCACCTCAACGGCCCACATGCCTGACACCCTTGGCACTCATTAGC
AGCGCGGTGGTTTCATGTCGGACTCGCGTGCCTTTGACCACTATGTGAAGAGGAGAAAATT
>chr1D_1
CCTGGAGTCAGCTCCGTCTGCCGCCACCGGTGGCCGCCGCCATCCCCAGTTGGTCCCAAAGCGGCTGCTGCCATCTCCAC
TTGCCGGACCCCACCATTCACACCCACCTCCCGAGCTCGA-----------------TTCAGGCGCGCTCCTCCAATCGC
GCTTGTTGCGGACGATGGGATGGGCATGGGCAGCCCTCCGGTCCGGAGTTCCAAGGTGGCGCACCCCAAATTCATCGTCC
CCGTCCGGCTGGGTCGGCTCGATCAGCCTCATCATTCGATCGCAGCCTTATTCAACCGCTCCCAGCCCCAGCCACGGCGG
GGAGGAGGATGCG------GAT------GAGGCCAGGCAAGAGATGCTGAACAGATGGGTACACCGCGCCGCACAGACAA
CTTTCAGGGACTACCTCCATGTCAAGCGCGGCCTGTGCCTCACTGACGCCAAGCATATCAGCGAGCGATCGCCCGTCTTC
CTCAGCGAGCTGCTGGA------GAAGGTGAACAATGCGGTGCCGAAGCCTGCTGATCAGGTTGCAGAGGGGGCGAGATT
CAGGTCCAAAGTGAAGAAGAGGGTCAGCAAGGCGCTGGTGCGATTGCTCCATCGCCGCCCTGTCAACGAGTTCAGGCCCT
TCTTTGAGAGCATCGGCCTGAGGCCGGACGAGTGGGATTCCCTCTTGCCGCGGGATCTCACATTCCTCGCCGATGCCGAC
ATGCTGCTCGAGAGCTACCGTGCACTATACAGTTACGGCATTGCGCATGACAAGATTGGAGAGATATACCGGAATGCTAC
CGAGGTGTTTAGTCTTGGCCAGGGCGTTCTTGCATCTAAGCTCGAGGTCCTTGAGGGTCTAGGCTTCAGTAAGGCCAGTG
TGATCAAACTAGTGATCTCTACTCCTACCGTATTGGTTCATGATCCGGCTGTGGAACTGAAGACGATCTTGCAGTGGCTA
GACGACATTGGGATTCAGCCAGACTGGATCGGCCAGTTCTTCACTGAATATCAGTCCTATAATTGGCAAAAGATTGTCGA
AGCTCTGCACTTCTTGAGTGATTTGGGGTTTACTAAGGATGATATTGGTAAAGCGGTGAGGAAACATCCAGATTTGTTGT
TGGAATGGTCTGGTGAGATGCTACGACAAGTGGTTGCCGACATGCAAAGGTTGGGATCTGGGAAAAGGGAGTTACTTGAT
CTTTTTCTGAACTACCGCAATCTTAAAAGCGGGGATGTTGGTAAGAACATATGGACGGGAACACGTTTCTTACGTGGCAT
TGGCATGAGCCATGAGGATGTGAAGAAGTTTCTGGATTCTCATGGATGGATATTCGGTGCTGCCACCATGAAGGCCGCGA
GCACCATTCTTGGGCAACTCAATGTGGGGAAGGCACGGCTGGGAAGGATCGTAATGGAGGAACCACGTCAGTTGATGAAT
TATAAGATTGGCTCAAAGGTCAGCAGATTACCAAGATGTAAACCTGAACCCTGTGTCAAGGAGAAGAGGGAATTCTTAAG
ACGCATAGGGTTTGTTGAAGGCTCGGAATATATGGAGAAGGCACTCAAAGCTATCCGTGGAAAAGGCGCCAACCTGCAAG
ATAAATACAGCAATTTAGTGGAGGAAGGGTTGGACCCAAAAGATGTAACTCACATGGTGAAGATGGCTCCTCGGATTCTG
AATCAGAAGACGGACGCCATTGCTTATAAGATATCGTTCCTTGTGCATGTGGCAGGTTATCCCCCGAGTGCTGTGGCTGC
TTTCCCACGGTACCTAGAGTTCACTGTGCACATAAGCAAACTTAAGATGTTGATGTACAGTTGGATGCTACAAAGGGGGC
TGGCTGCACCCCAACTTACTCTAAGCACAGTCCTATCTTCCTCAGAAACAGAATTCACCAAGGCTCA---TGTATATAAG
GTTCCCATGGGTCGTGAAGTTTGGTGGAAGTTCAAGCAGCAGGGAGGTAGCTTCGGCCAAGAGGAGATCAGATGGCTGCG
ACGCAGGGTGCACCTTGGATGATAGTCTAATCGAATGCATGAGTTGGCTGC-----TTTTCCCC---TTTCTTTCTACAT
TTCCGGATCAATACAATATTCAGG-----TGCAC--ACCTTCCATAATGCATGCCTCCTCAT----ACATGCC-AGTTCT
CTTTTGGAAGAAACATGTAATAATCCAGTGGGTGATATCTGCAATTTGGGCTTCTTGGGTAATGGTACTAGCATTTTCC-
--------------------------ATCACATTGTGCTTTTGACGTCATGGTAGTACTATTT-----------------
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------------------------------------TCGAACACCATGAAAAACTTTGGATTGGCG--------------
-------------------------------TTTGCGCCACACTAGCCAAACAAAATGTGCACAACAGGAGTATCTGGAA
GTTTTGCAATACCACTTGGTTAACCATACCTATCTTAGGTTTTGTAA--TTTTGCAAACTGCTAGTTGAACTGTCAGTTC
TTACAGAGACAAAGAAACAGAGCAAAGTATATAGCATAGCATCACAC--------TACACTAATTCCACGTACTGACTGC
GCAGCTTCAGATTAACCCCATATTGGCTCATGTGTTGAGTTTGAGCCTATACGAGACTTTCCTCGCTCCAAGAGTAG-AT
GCAATCTTCTTGACAGG---------------------------------------------------------------
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-----------------------CAACTGAACTAACTTCTTTATTGAGGATATGATCTGAAACAACAATGATGGCTCTGT
TTGAAACATTAAACTAAGGTCAAACCTG-------------------------------------------------AA-
------------------------------------------------CCATGAATATAGACATCATCATTTAATTCACT
AAGCTCCCA-----------------GATTGATTGAGTCTAGGGATTTTCGTCGATGTGCACAATTTTGACCAGATCGTG
GGCAACTGCTAGGCCCATTTGGTCAGAGGCTGGACAGTGTGGTCTGGGTCTGTCGGTGTAGGAGAGGAACGGTACTGTGT
GGGGACTTGACTACCAGTGGCTGTGGAAACTGTTTTCACCGCATCGGCCCACATACCTGACACCCATGGTGCTCATTAGC
AGCGCGGTGGTTTTACGTCGT-CTCGAGTGCCTTTGACCGCTAGGTGAAGAGGAGAAAATT
>chr1A_139
--------------------------------------------------------------------------------
----------------------------------------------------------TCAGGCGCCCTCCTCCAATCGC
GCTTGTTGCGGACGATGGGATGGGCATGGGCAGCCCTCCGGTCCGGAGCTCCAAGGTGGCGCGCCCAAAATTCATCGTCC
TCGTCCGGCCGGGCCGGCTCGATCGGCCTCATCATTCGGTGGCGGCCATATTCGACCGCTCCCAGTCCCAGCCACGGCGG
GGAGGAGGATGGG------GAT------GAGGCCAGGCAAGAGATGCTGAACAGATGGGCACACCGCGCCGCACAGACAA
CTTTCAGGGACTACCTCCATGCCAAGCGCGGCTTGTGCCTCACTGACGCCAAGCATATCAGCGAGCGATCGCCCGTCTTC
CTCAGCGAGCTGCTGGA------GAAGGTGAACAAGGCGGTGATGAAGGCTGCTGATCAGGGTGGGGAGGGGGCGAGATT
CAGGTCGAAAGTGAAGAAGAGGGTCAGCAGGGCGCTGGTGCGATTGCTCCACCGGCGCCCTGTCAACGAGTTCAGGCCCT
TCTTTGAGAGCATCGGCATCAAGCCGAGCGAGTGCGATTCCCTCTTGCCGCAGGATCTCACATTCCTCATGGATGCCGGG
GTGCTGCTCGAGAGCTACCGTGCACTATGCAGTTATGGCATTGCGCATGACAAGATTGGAAAGATATACCAGAAGGCGGC
GGAGGTGTTTAGTCTTGGCCAGGGCGTTCTTGAGTCTAAGCTCGAGGCCCTTGAGGGTCTAGGCTTCAGTAAGGCCAGTG
TTACCAAAATAGTGATCTCTACTCCTACCGTATTGGTTCATGACCCGGCTGTGGAACTGAAGACGATCTTGCAGTGGCTA
GACGACATTGGGATTCAGCGAGACTGGATCGGCCAGTTCTTCACTGAATATCAGTCCTATAATTGGCAAAAGATCGTCGA
AGCTCTTCAGTTCTTGAGTGATTTGGGGTTCACCAAGGATGATATTGGTAAAGCGGTGAGGAATCATCCAGA--------
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>chr1D_174
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-------------GATGGGGTGGGCATGGGCAGCCCTCCGGTCCGGAGTTCCAAGGTGGCGTGCCCAAAATCCATCGTGC
TCGTCCAGCTGGGTCGGCTCGATCCGCCTCATCATTCGGTCGCAGCCCTATTCGACCGCTCCCGGTCCCAGCCACGGCGG
GGAGGAGGATGGGGATCGGGAT------GAGGTCAGGCAAGAGATGCTGAACAGATGGGTGTTCCGCGCCGCACAGACAA
CTTTCAGGGACTACCTCCATGCCACGCGCGGCTTGTGCTTCACTGACGCCAAGCATATCAGCGAGCGCTCGCCCGTCTTC
CTCGGCGAGCTGCTGGAGGAGGTGAAGGTGAACAAGGCGGTGATGAAGGCTGCTGATCAGGATGGAGACGAGGCGAGGTT
GAGGTCAAAAGTGAAGAAGAGGGTCAGCAGGGCGCTGGTGCGATTGTTCCACCGCCGCCCTGTCAACGAGTTCAGGCCCT
TCCTTGAGAGCATTGGCCTCAGGCCGAGCGAGTGCGATTACCTCTTGCCGCAGGAACTCACATTCCTCGCGGATGCCGAG
ATGCTGCTCGAGAGCTACCATGCACTATGCAGTTACGGCATTGCACGCCGCAAGATTGGAAGGATATACTGGAATGCTAC
CGAGGTGTTTAGTCTTGGCCAGGGCGTTCTTGCATCTAAGCTCGAGGCCCTTGAGGGTCTAGGCTTCAGTAAGGCCACTG
TGATCAAATTAGTGATCTCTACTCCTACCGTGTTGGTTCATGACCCGGCCGTGGAACTGAAGACGTTCTTGCTGTGGCTA
GACGACATTGGGATTCAGCGAGACTGGATCGGCCAGTTCTTATCTGAAAGGGTGTCCTATAATTGGCCAAAAATGGTCCA
AGCTCTTCAGTCCTTGAGTGATCTGGGGTTCACCAAGGATGACATTGGTAAAGTGGTGAGGAAAAATCCGCATTTGTTGT
TGGAACACTCTGGTGGGGAGCTACATTCCACAGTTGACACCATGCAAAGGGTTGGATCTGGAAAAAAGGAGTTACTTGAT
CTTTTTCTGAACCACCCCAATGTTAACAGCGTGGATGTCGGTTGGAACATATCGAAGGGGTCATGTTTCTTACATGACAT
TGGCATAAGCTATTGTGATGTGACGAAGATTTTGGATTCTCATGGATGGATGTTCGGTGCTGCCCCCATGAAAGCCACGA
GCACCATTCTTGCGCAACTCAATGTGGGCAAGGCACGGCTGCGAAAGATCATAATGGAGGAACCACGTCAGTCGATGAAT
TATACGATTGGCTCAAAGGTCAGCAGACTGCCGAGATGTAAACCTGAACCCTGTGTCAAGGAGAAGAGGGAATTCTTAAG
ACGCATAGGATTTGTTGAAGGCTCGGAAGATATGGAGAAGGCACTCAAAGCCATCCGTGGAAAAGGCGCCAACCTGCAAG
ATCGGTACAACAAACTAGTGGAGAAAGGGTTAGACCCAAAACATGTAGCCCACATGGTGAAGGTCGCTCCTCGGATTCTG
AATCAGAAGACGGACGCCCTTGCTTATAAGATATCCTTCCTTGTGCATGTGGCGGGTTATCCCCTGAGTGCTCTGCCTGC
TTTCCCACGGTACCTAGAGTTCACTGTGCACAGAAGCAAACTCAAGATGCTGATGTACAGTTGGCTGCTAGAAAGGGGGC
TGGCTGCACCCCAACTTACTCTTAGCACGGTCCTAGCTTCCTCGGAAACAGAATTCATCAAGGCTCATCATGTATATAAG
GTTCCCATGGGTCGTGAGGTTTGGTGGAAGCTCAAGCGGGAGGGAGGTAGCTTCGGCCAAGAGGAGATCAGATGGCTGCG
ACACA-GGTGCAACTTGGACGATAGTCGAATCGAATGCATGAGTTGACTGC-----TTTTCTTTTCTTTTCTTTCTGCAT
TTCTAGCCCAACACATTATTCAGG-----TAGTACAACCTTCTATAATTCCTGCCTCCACATGTATGTATGCC-AGTTCT
CTTTTGGAAGAAACATGTGATAATCCTGTCAGTGATATTTGTAATTTGGGCTTCTGGCATTATGGTGCTGGCATTTATC-
--------------------------ATCGCATTGTTCTTTTGACGTCATGGTAGTACTATTTCACATCTCATTCACATT
GTACTTCTTTTTTTTTACGTATTTCCGAGAGCTTAGAGTTGGTCTTAGCAGTATTCAAAATATATCCTCAAAATAATTTC
TGTTGGCTCATTTTGGTCCCTCCGAATTTCTGTCTATATAAATGATTG-----CCTTCTCCTAATGTCCTGCCTAGACTC
TCGTGGTCCAGTGTTGGAAAATGAATAATGAGAGAATGGAAGATGAGGAAACAAAGAAACAAACTGGAGAAAAACATACA
GATTGAAGCTTTCGGATGGAGGATTTG----TATAGTGTGGAGTGTTTGTTTTAGCTCACTATTTATTCAGAGTCATGTG
TGTCCAAGGGAAAAGTAGGAATCATGCT-ACAATTTTCAAACACGGTGAGAAAGTTTGAACTGGCG--------------
-------------------------------ATTGCGCCACACTAGCCAAACAAAATCTGCACAACAGGAGTATCTGGAA
GTTTTGCAATGCCACTTGGTTAACTATACCTACCTTAGGTTTTGTATAGTTTCGCAAACTGTCAGTT-------------
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>chr1B_174
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-------------GATGGGGTGGGCATGGGCAGCCCTCCGGTCCGGAGTTCCAAGGTGGCGTGCCCAAAATCCATCGTGC
TCGTCCAGCTGGGTCGGCTCGATCGGCCTCATCATCTGGTCGCAGCCCTATTCGACCGCTCCCAGTCCCAGCCACGGCGG
GGAGGAGGATGGG------GATCCAGACGAGGTCAGGCAAGAGATGATGAACAGATGGATGTTCCGCACCGCACAGACAA
CTTTCAGGGACTACCTCCATGCCGAGCGCGGCTTGTGCTTCACTGACGCCAAGCATATCAGCGAGCGCTCGCCTGTCTTC
CTCGGCGAGCTGCTGGAGGAGGTGAAGGTGAACAAGGCGGTGACGAAGGCTGCTGATCAGGATGGAGACGAGGCGAGGCT
GAGGTCAAAAGTGAAGAAGAGGGTCAGCAGGGCGCTGGTGCGATTGTTCCGCCGCCGCCCTGTCAACGAGTTCAGGCCCT
TCTTTGAGAGCATTGGCCTCAGGCCGAGCGAGTGCGATTACCTCTTGCCGCAGGACCTCACATTCCTCGTGGATGCCAAG
ATGCTGCTCGAGAGCTACCATGCACTATGCAGTTACAGCATCGCACGCCGCAAGATTGGAAGAATATACTGGAATGCTAC
CGAGGTGTTTAGTCTTGGCCAGGGCGTTCTTGCATCTAAGCTCGAGGCCCTTGAGGGTCTAGGCTTCAGTAAGGCCAGTG
TGATCAAACTAGTGGTCTCTACTCCGACCATGTTGGTTCATGACCCAGCTGTGGAACTGAAGACGTTCTTGCTGTGGCTG
GACGACATTGGGATTCAGCGAGACTGGATCTGCCAGTTCTTATCTGAAAGGGTGTCCTATAATTGGCCAAAAATGGTCCA
AGCTCTTCAGTCCTTGAGTGATCTGGGGTTCACCAAGGATGACATTGGTAAAGTGGTGAGGAAAAATCCACATTTGTTGT
TGGAACAGTCTGGTGGGGAACTACATTCCACAGTTGACACCATGCAAAGGGTTGGATCTGGAAAAAGGGAGTTACTTGAT
CTTCTTCTGAACCACCCCAATGTTAACAGCGTGGATGTCGGTTGGAACATATCGAAGGGATCATGTTTCTTACATGACAT
TGGCATAAGCTATGGTGATGTGAAGAAGATTTTGGATTCTGATGGATGGATGTTCGGTGCTGCCCCCATGAAAGCCACGA
GCACCATTCTTGCGCAACTCAATGTGGGGAAGGCACGGCTGCGAAAGATCATAATGGAGGAACCACGTCAGTCGCTGAAT
TATACGATTGGCTCAAAGGTCAGCAGACTACCGAGATGTAAACCTGAACCCTGTCTCAAGGAGAAGAGGGAATTCTTAAG
ACGCATAGGATTCATTGAAGGCTCGGAAGATATGGAGAAGGCGCTCAAAGCTATCCGTGGAAAAGGCGCCAACCTGCAAG
CTCGGTACAACAAACTAGTGGAGAAAGGGGTGGACCCAGAACATGTAGCCCACATGGTGAAGGTTGCTCCTCGGATTCTG
AATCAGAAGACGGACGCCCTTGCTTATAAGATATCCTTCCTTGTGCATGTGGCGGGTTATCCCCTGAGTGCTCTGCCTGC
GTTCCCACGGTACCTAGAGTTCACCGTGCACAGAAGCAAACTTAAGATGCTGATGTACAGCTGGCTGCTAGAAAGGGGGC
TGGCTGCACCCCGACTTACTCTAAGCACGGTCCTAGCTTCCTCTGAAACAGAATTCATCAAGGCTCATCATGTATATAAG
GTTCCCATGGGCCGTGACGTTTGGTGGAAGCTCAAGCGTGAGGGAGGTAGCTTCGGCCAAGAGGAGATCAGATGGCTGCG
ACACA-GGTGCAACTTGGATGATAGTCGAATCGAATGTATGATTTGACTGTTTTTTTTTTCTTTTCTTTTCTTTCTGCAT
TTCTAGCTCAATGCATTATTCAGG-----TAGTACAACCTTCTATGATTCCTGCCTCCTCAC----GTATGCC-AGTTCT
CTTTTGGAAGAAACATGTGATAATCCTGTCAGTGATATTTATATTTTGGGCTTCTGGCATTATGGTACTGGCATTTATC-
--------------------------ATCACATTGTTCTTTTGACGTCATGGTAGTA-----------------------
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>chr1A_174
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-------------GATGGGGTGGGCATGGGCAGCCCTCCGGTCCGGAGTTCCAAGGTGGTGTGCCCAAAATCCATCGTGC
TCGTCCAGCTGGGTCGGCTCGATCCGCCTCATCATTCGGAG--------ATTCGACCGCTCCCAGTCCCAGCCACGGCGG
GGAGGAGGATGGGGATCCAGAC------GAGGTCAGGCAAGAGATGCTGAACAGATGGATGTTCCGCGCCGCACAGACAA
CTTTCAGGGACTACCTCCATGCCACGCGCGGCTTGTGCTTCACTGACGCCAAGCATATCAGCGAGCGCTCGCCTGTCTTC
CTCGGCGAGCTGCTGGATGAGGTGAAGGTGAACAAGGCGGTGACGAAGGCTGCCGATCAGGGTGAAGACGAGGCGAGGCT
GAGGTCAAAAGTGAAGAAGAGGGTCAGCAGGGCGCTGGTGCGATTGTTCCACCGCCGCCCTGTCAACGAGTTCAGGCCCT
TCTTTGAGAGCATTGGCCTCAGGCCAAGCGAGTGCGATTACCTCTTGCCGCAGGACCTCACATTCCTCGCGGATGCCGAG
ATGCTGCTCGAGAGCTACCATGCACTATGCAGTTACGGCATCGCACACCGCAAGATTGGAAGGATATACTGGAATGCTAC
CGAGGTGTTTAGTCTTGGCCAGGGCGTTCTTGCATCTAAGCTCGAGGCCCTTGAGGGTCTAGGCTTCAGTAAGGCCAGTG
TGATCAAACTAGTGATCTCTACTCCGACCGTGTTGGTTCATGACCCGGCCGTGGAACTGAAGACGTTCTTGCTGTGGCTG
GACGACATTGGGATTCAGCGAGACTGGATCGGCCAGTTCTTATCTGAAAGGGTGTCCTATAATTGGCCAAAAATGGTACA
AGCCCTTCAGTCCTTGAGCGATCTGGAGTTCACCAAGGATGACATTGGTAAAGTGGTGAGGAAAAATCCACATTTGTTGT
TGGAACAGTCTGGTGGGGAGCTACACTCCACAGTTGACACCATGCAAATGGTCGGATCTGGAAAAAGGGAGCTACTTGAT
CTTTTTCTGAACCACCCCAATGTTGACAGCGTGGATGTCGGTTGGAACATATCGAAGGGATCATGTTTCTTACATGACAT
TGGCATAAGCTATTGTGATGTGAAGAAGATTTTGGATTCTCACGGATGGATGTTCGGTGCTGCCCCCATGAAAGCCACGA
GCACCATTCTTGCGCAACTCAATGTGGGCAAGGCGCGGCTGCGAAAGATCATAATGGAGGAACCATGTCAGTCGATGAAT
TATACGATTGGCTCGAAGGTCAGCAGACTGCCGAGATGTAAACCTGAACCCTGTGTCAAGGAGAAGAGAGAATTCTTAAG
ACGCATAGGATTTGTCGAAGGCTCGGAAGATATGGAGAAGGCACTCAAAGCTATCCGTGGAAAAGGCACAAAACTGCAAG
ATCGGTACAACAAACTAGTGGAGAAAGGGTTAGACCCAAAACATGTAGCCCACATGGTGAAGGTTGCTCCTCGGATTCTG
AATCAGAAGACGGACGCCCTTGCTTATAAGATATCCTTCCTTGTGCATGTGGCGGGTTATCCCCTGAGTGCTCTCCCTGC
GTTCCCACGGTACCCAGAGTTCACTGTGCACAAAAGCAAACTTAAGATGCTGATGTACAGTTGGCTGCTAGAAAGGGGGC
TGGCTGCACCCCAACTTACTCTAAGCACGGTCCTAGCTTCCTCGGAAACAGAATTCATCAAGGCTCACCATGTATATAAG
GTTCCCATGGGTCGTGAGGTTTGGTCGAAGCTCAAGCGGGAGGGAGGTAGCTTCGGCCAAGAGGAGATCAGATGGCTGCG
ACACA-GGTGCAACTTGGACGATAGTCGAATCGAATGCATGAGTTGATTGCTTTTCTTTT---C---TTTCTTTCTGCAT
TTCTAGCTCAATACTACATTATTCAGATATAGTACAACCTTCTATAATCCCTGCCTCCTCAC----ATATTCC-TGTTCT
CTTTCCGAAGAAACATGTGATAATCCTGTCAGTGATATTTGTAATTTGGGCTTCTAGCATTGTGGTACTGGCATTTATCA
TTGCATTGTTCTTTTTTTTGTGAGAAATCACATTGTTCTTTTGACGTCATGGTAGTACTATTTCACATCTTATTCACATT
GTACT--TTTTTTATTACGTATTTCCGAGAGCTCAGAGTTGGTCTTAGCAGTATTCAAAATATATCCTCAAAC-AATTTC
TGTTGGCTCATTTTGGCCCCTCCGAGTTTCTGACCATATAAATGACTGAAATACCTTCTCCTAATGTCCTGCCTAGACTC
TTGTGGTCCAGTGTTGGAAAATGTATAATCAGAGAATGGAAGATGAGGAAAAAAAGAAACAAACTGGAGAAAAACATACA
GATTGAAGCTTTGGGATGGAGGATGTATGTATATAGTGTGGAGTGTTTGTTTTACTTCACTGTTTATTCAGAGTCATGTG
TGTCCCAGGAAAAAGTAGGAATCATGCTTACAATATTTGAGCATGATGAGAAGGTTTGAACTGGCAATTGCGCCACACTA
GCCAAACAAAATCTGCACAACAGGAGTATCAATTGCGCCACACTAGCCAAACAAAATCTGCACAACAGGAGTATCTGGAA
GTTTTGCAATGCCACTTGGTTAACTATACCTACCTTAGGTTTTGTATAGTTTCGCAAACTGACAGTT-------------
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>chr1A_1078
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---------------------------------------------------------------------AGATTTGTTGT
TGGAATGGTCTGGTGAGATGCTATGAGAAGTGGTTGCCGACATGCAAAGGTTGGGATCTGGGAAAAGGGAGTTACTTGAT
CTTTTTCCGAACTACCGCAATCTTAAATGCGGGGATGTTGGTAAGAACATATGGACGGGAACACGTTTCTTACGAGACAT
TGGCATGAGCCATGATGATGTGAACAAGTTTTGGGATTCTCATGGATGGATATTCGGCGCTGCCCCCATGAAGGCTGCGA
GCACCATTCTTGGGCAACTCAATGTGGGGAAGGCAAGGTTGCGAAGGATCGTAATGGAGGAACCACGTCAGTTGATGAAT
TATAAGATTGGCTCAAAGGTCAGCAGATTACCAAGATGTAAACCTGAACCCTGTGCCAAGGAGAAGAGGGAATTCTTAAG
ACGCATAGGATTTGTTGAAGGCTCGGAAGATATGGAGAAGGCACTCAAAGCTATCCGTGGAAAAGGCGCCAACCTGCAAG
ATAAATACAACAATTTAGTGGAAGAAGGGCTGGACCCAAAAGATGTAATTTACATGGTGAAGATGGCTCCTCGGATTCTG
AATCAGAAGACGGACGCCATTGCTTATAAGATATCCTTCCTTGTGCATGTGGCGGGCTATCCCCTGAGTGCTGTGGCTGC
TTTCCCACGGTACCTAGAGTTCACTGTGCACATAAGCAAACTTAAGATGTTGATGTACAGTTGGATGCTACAAAGGGGGC
TGGCTGCACCCCAACTTACTCTAAGCACAGTCCTATCTTCCTCAGAAACAGAATTCACCAAGGCTCA---TGTATATAGG
GTTCCCAAGGGTCGTGAAGTTTGGTGGAAGTTCAAGCAGCAGGGAGGTAGCTTCGGCCAAGAGGAGATCAGATGGCTGCG
ACGCAGGGTGCACCTTGGACGATAATCTAATCGAATGCATGAGTTGGCTGC-----TTTTTCCC---TTTCTTTCTACAT
TTCCGGCTCGATACAATATTCAGG-----TGCAG--GCCTTCCATAATCCATGCCTCCCCAT----ATATGCCAAGTTCT
CTTTTGTAACGGACATGTGATAATCCAGT---------------------------------------------------
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>chr1B_1972
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------GGTGCACCTTGTACGATAGTCTAATCGAATGCATGAGTTGGCTGC-----CTTTTCCC---TTTCTTTCTACAT
CTCCCGCTCAATACAATACTCAGG-----TGCAG--GCCTTCCATAATCCATGCCTCCTCAT----ACATGCC-GGTTCT
CTTTTGGAAGAAACATGTGATAATCCAGTGGGTGATATTTGCAATTTGGGCTTCTTGGGTTACGGTACTAGCATTTGTC-
--------------------------ATCACATTGTGCTTTTGGTGTCATGGTAGTACTATTT-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------TCGAACACGGTGAAAAAGTTTGAACTGGTG--------------
-------------------------------ATTGCGCCACACTAGCCAAACAAAATCTGCACAACAGGAGTATCTGAAA
GTTTTGCAATGCCACTTGCTTAACCATGCCTACCTTAGGTTTTGTTA--TTTCGCAAACTGCTAGTTTAACTGTCAGTTC
TTACAGAGACAAAGAAACAGAGCAAAGTATATAGCACAGTATCACACTACAGTACTACACTAATTCCACGCACTGACTGC
ACAGCTTCAGATTAACCCCATCTTGGCTCATGTGTTGAGTTTGAGCATATACGAGACTTTCCTCGCTCCAAGAGTAGGAT
GCAATCTTCTTGACCTGCAACTGAACTTTTTTTTAGAACGAAGGCTCAAGAAGAGCCCGGCTTTGAATTAACAAAGCCAT
CAACCGGCCAGGATTACATCTAACAAACAAAGGAAACAAAGAACAAAACAGCAAGCCGATACAAGGTGCTGTGTAAAAGC
TATCTGGCTACTACAAACTACTAGCAAGGATATGGAAACTAAAGCACAAGTCCAGCTAGAAGTCGAAGAAGCCCTCCACG
GCGAGCAGAACAACACGCAGGCACCAGCAAAGCTTGGGGAAAACAAACAGTAGTTGGAGGAGCTCCGTTGTCAGCTCCAT
GGGCTCTGGCCGTCGATGTCGCCCTCCTCCACCTCTGAAGGGGGCTCCCTGCCCCCTCGCCCTGGCACGAAGGGCGCCGA
TCCGTCGAAAGGTGGAGACGCCCACCCGAGGGCTAAAGAGCGACCGACGCCGTTGCCAACCGGAATACCACACCAGGACA
CCACCGCCAAACTACTTGGAGCTCATCCAAGGCAAGCATCGGCAATAACTGTTATCTGCACACGAGGAGAAGCAAGCTAC
ACGGCAAGGCTGCTGAAGACCGAGCAACCCCCAAGTCCCCCAAAGCTCACCAAAGACGGCACCCCCTTGAGGGTGACGGC
GCCCACGGCGTCGCTGCCGCCCAATCCCGAGGGATTTGGGTTTTCACCTGGTCCACGAGCAACACGGGAGGAAGAGGAGG
GGGAAAGGGGCATTTTTACCAGCGCCTACAGGTAGGGGACGGCACCCATGGGCGTCGCCGCCGGCAGGCCGGCATAGCCA
GCCACGGATTTCTCCGGTCCCCTCTCCCAACCCCCACCTCGAGAGCAGACAAGGCTACGGTGCCCGAAGGCCGCCGGAGA
ACGGATCTGAGACGAGGGTGACAGGAGGTTGAAGAGGAAGATGCCTTCAGATCTGATGCGGGTGCCCCGAGGCCACCGCG
CACCACAGCCATCGCCCGCCGTCACCGCGCCGCCCGCACGCCCGAGATGGACGGCCAGCACCCGCTGCCGCCGTTTGCTG
AGGACGACGCAGCACCACCGCCCGAGGTCGCCACCTCGGCTCCGAGATCCTCCACAGGGGCGGAGCGACCAGATCCTCGC
CGCCACCATCCCCGGCGGCCGCGCGGCGCTCCGGCGACCCCCTCCGGCGGCGACGAGGGAGAGGAAAAGGGGGAGGGAGC
CCCGGCGGCGGGCTAGGGTTTGTGCCGCCCGGGTCGCCCCTGCAGGAGCGACGCGGGGGCCTGCGGGATTATCCGTGCCG
TTCGACTGGGGCCAGACCACCTGCAACTGAACTAACTTCTTTATTGAGGATATGATCTGAAACAACAATGATGGCTCTGT
TTGAAACATTAAACTAAGGTCAAACCTGTAGCAAGAACGTCATCTGTTTGCACACTGCTCCAGAGGGGTCTCACCTGAA-
------------------------------------------------CCATGAATATATACATCATCCTTTAAGTCACT
AAGCTCCCTGGGACTGGAGCTCCCAGAATCGGTTGAGTCTAGGGATTTTCGTCGATGTGCACGATTTTGACCGGATCGTG
GGAAACCTGGA--CCCATTTGGTCAGAGGCTGGACGGTGTGG-------------------------------ACTGTGT
GGGGACTCGACTACTATTGGCTGTGGAAACTGTTTTCACCTCATCGGCCCACATGCCTGACACCCGTGGCACTCATTAGC
AGCGCGGTGGTTTTATGTCGGTGTCGCGTGCCTTTGACCGCTATGTGAAGAGGAGAAAATT
>SNPs
-----------------------------------------------------------S--------------------
---S-S----------------S----------S--S--SSSSSSSSSSSSSSSSSS-----------------------
--------------------------------------------------------------------S-----S-----
--------------------S--S-------S------------------------S--------------------S--
----------------------------------------------S---------------------------------
---------------------S--------------------S-S-----------------------------------
------------------------S-------------S-----------------------------------------
---------------------------------------S-----------S----------------------------
----------------------S---------------------------------------------------------
S-------------------------S-----------SS---------S----------------------------S-
--------------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
--------------------------------------------------------------------------------
--------------S-----------------------------------------------------------------
--------------------------------S--S---S------S---------------------------------
-------------------------S-----S---------------------S------S-----------S-------
-----------S--------------------------------------------------------------------
-------------------------------------------S--------------S---------------------
-----------------------------------------------S--------S-----------------------
------------------------------------------S--S----------------------------------
----------------------------S---------------------------------------------------
-----------------S---------------------------------------------------S---S------
---------S--------S-------------------------------------------------------------
----------------------------------------------------S-----S---------------------
-----------------------------------------------------S--------------------------
--------------------------S-----------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S---------------------------
---------------------------------------------------------SSS--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S---------------------------------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S---------------------------------------------------S------------------------
-------------S----------------------S---------S----S----------------------------
-SS-------------S---------------------------------------------------------------
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--------------------------------------------------SS----------------SS----------
-------------------------------------------------------------------------------S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------
-------------S--------------------------SS-------------------S------------------
----------S---------------------------------------------------------------------
-------------------------------------------S---------------------S--------------
-------------S-------S-----------------S---------------------
>forward_86
------------------------------------------------------------------GCTGCCATCTCCAC
TTGTCT--------------------------------------------------------------------------
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>reverse_1153
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--------------------------------CTTTCCAGCATGCAGAGGGT----------------------------
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-------------------------------------------------------------
>forward_297
--------------------------------------------------------------------------------
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-------------------------------------GATCGCGGCCATATTCGACA-----------------------
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>reverse_2706
--------------------------------------------------------------------------------
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-----------------------------------------------------------------TATTGCGCCACACTA
GCCAA---------------------------------------------------------------------------
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-------------------------------------------------------------
