>input_sequence_63664
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--ATGGGGAAGCATACAGCAGTAGCACTAGTGCTTCTCGGTGTGCTCTGTGGAATAGCTTCTCATGGGGTCGACGCCCAG
TATTACTGGACGACCGCCACGGCGACGTTCTACGGCGGCGGCGACGGCTCCGGCACTATGGGTAAGTCAG----TTTCCC
TTCCGCTTCTTTACTTTCCTGTATCATTCTCCGGTGGAGAGTGCATAACGTACGTCTAAATCTCTAGTTGTGAAGTGTGT
TTAAAAGGGTA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GAGTAG
ATTTTTCTAGTACTACGTTTG---GTGTGATATACTCTACTCATCCAAATCAAGGAGAAG------------------TG
ATGTTGATCTGATGATGTTTGTATCATATGTATGCTCCATGTATGTATGCAGGAGGCGCGTGTGGGTACGGCAACCTGTA
CAACTCGGGGTACGGGATCAACAACGCGGCGCTGAGCACGGCGCTCTTCAATGACGGCGCCATGTGCGGCGCGTGCTACA
CCATCTACTGCGACACCGGCCGGAGCAGGATGTGCAAGCCGGGCACCCAGATCACCGTCTCCGCCACCAACTTCTGCCCG
CCCAACTGGGCGCTCCCCA---GCGACAACGGCGGCTGGTGCAACCCGCCGCGCGTGCACTTCGACATGTCGCAGCCCGC
CTGGACCAGCATCGCCATCTACCAGGCCGGCATCGTCCCCGTCGTGTACAGGAGG-------------------------
----------------------------------------------------------------GTCTCCTGCCAGAAGC
GCGACGGCATCCGCTTCGGCATCTCCGGGAGGGACTACTTCGAGCTGGTGGTGATCACCAACGTCGGCGGCAGCGGGGTC
GTGTCCCAGATGTG-GATCAAGGGCTCCAACACCAACTGGCTCGCCATGAGCCGCAACTGGGGCGCCAACTGGCAGAGCA
ACGCCTACCTCAACGGCCAGAGGCTCTCCTTCAGGGTCAGGCTCGACGACGGCCGCGAGGCCACCGCCACCGACGTCGCC
CCCTCCAACTGGTGGTTCGGGGCCACCTACACTTCCTGGATCAACTTCTACTAG--------------------------
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>chr5B_1_TraesCS5B01G548500
GAGGGTTAGACTTAGTGTACATACAAGTCCCAATCTAATTGAAATT-----------------------TAGTGCGTAGC
ATACCTAGCGGGAATGTACCCATTGTAGGCTAAGCTAGCCTCCTGTTAGTTTAGCCAAGCTAAACCACATATCAAAACAT
GGCAC--TACCCTGACAACAATGGAATGCACATAGGCTCATGTGCGGAGCTCTTGCCTTGTGTGATGTTAATGTGAATAG
CATCTTGGGATGTCAAGCGGTGGTGCAAAAACATGTTAATTTTGAGATGTGAAAATTTTGCGTCGGTGAGATATAAGTGA
TACGTCGTTCAGATGTGCAAAAACATGTTAATTTTGATATGTGCATG-AAAAAAAATTCTAGTGGCATAATTAAAGCTTC
AGCACACAATTGTCTAACCTTTGGCGGTGATACGCCAGTGGTGGCGGTGCCAATTTCGACGAAAGTCGGTGGACAAATCC
AGGTTGAGATCCATCCGGAAGGAGATTTAGAGCTGGAGCTGATTTTCATTAAATTAGGACATTCAAGCATCTCATTA--T
CCTCCTATAGCTGCAATAGAATTGCACGTATTGTACTTTTCTGAAATTTGGTCAGACTCTTTGTTTCCTCCATCTTGTTC
TGGTTGAATTTTTCAGCGCAAATGATTCTCTCACATGCACGGTGGTGTGGATCTCAGTTAGGGCACATGCGCACTGACAG
TGCAGGAATTTGTCGACGCCTAGTTAAACTTCTTGGAGCTTCAAGAACATGGTGAACACGTCAGGAGTATATATCTTACT
AGTTTGAAAAACTTGATGTGCCAAAAGTCAAATAAGGAAGGATGGAGGGCGGCTAAGTTAACCCG--AGTACCCAACTAC
AACTGTAACA-------GTTGGAGGATATGCATGCTCATCATCATACTATAAAGCCCAGGGTGCAGTAGATACACAGTAC
ACAGAGCACAGCATATTCCTAGAAGACTTGCTCGGCCCAAGTACTACAGCGCTGTGTCTGT-----CATCTTCAGCAATC
CAATGGGGAAGCATACAGCAGTAGCACTAGTGCTTCTCGGTGTGCTCTGTGGAATAGCTTCTCATGGGGTCGACGCCCAG
TATTACTGGACGACCGCCACGGCGACGTTCTACGGCGGCGGCGACGGCTCCGGCACTATGGGTAAGTCAG----TTTCCC
TTCCGCTTCTTTACTTTCCTGTATCATTCTCCGGTGGAGAGTGCATAACGTACGTCTAAATCTCTAGTTGTGAAGTGTGT
TTAAAAGGGTA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GAGTAG
ATTTTTCTAGTACTACGTTTG---GTGTGATATACTCTACTCATCCAAATCAAGGAGAAG------------------TG
ATGTTGATCTGATGATGTTTGTATCATATGTATGCTCCATGTATGTATGCAGGAGGCGCGTGTGGGTACGGCAACCTGTA
CAACTCGGGGTACGGGATCAACAACGCGGCGCTGAGCACGGCGCTCTTCAATGACGGCGCCATGTGCGGCGCGTGCTACA
CCATCTACTGCGACACCGGCCGGAGCAGGATGTGCAAGCCGGGCACCCAGATCACCGTCTCCGCCACCAACTTCTGCCCG
CCCAACTGGGCGCTCCCCA---GCGACAACGGCGGCTGGTGCAACCCGCCGCGCGTGCACTTCGACATGTCGCAGCCCGC
CTGGACCAGCATCGCCATCTACCAGGCCGGCATCGTCCCCGTCGTGTACAGGAGG-------------------------
----------------------------------------------------------------GTCTCCTGCCAGAAGC
GCGACGGCATCCGCTTCGGCATCTCCGGGAGGGACTACTTCGAGCTGGTGGTGATCACCAACGTCGGCGGCAGCGGGGTC
GTGTCCCAGATGTG-GATCAAGGGCTCCAACACCAACTGGCTCGCCATGAGCCGCAACTGGGGCGCCAACTGGCAGAGCA
ACGCCTACCTCAACGGCCAGAGGCTCTCCTTCAGGGTCAGGCTCGACGACGGCCGCGAGGCCACCGCCACCGACGTCGCC
CCCTCCAACTGGTGGTTCGGGGCCACCTACACTTCCTGGATCAACTTCTACTAGCTAGCGGGAATGCGGGAT--------
--CATCGACGGCACTGCTGCTTAATCTATCATCTTTAGTATATACTT-AAGTATTAAAATTCATAAG-GGG-CGCCCTCT
GTTGCGATTCGCTATATATACTTGTGTTTTAGATGGGCTTGCGTATTAGCATCAGGAACCATGCAAGCACGCAACCAAGA
ATTGGTGTAACACACTCTTTCTTGCACCTACGCA-------CTGAAGCTTCAGA------AACCAGGCAAGCACACAATG
CGCAACTAAGAATTATTGTAAAAGGAAAATTGTACGAAATGAAGACGGCATAGCTAGTGGGGGCGGATTAGCAGCACGCA
GGGGCGGGGGCACGCAATCCA--TTTTTCTTTTGGCTTTCTATATATTTTCAATGAATTATATCTTTCTGAACCAAAAGT
TCAAATTAAGTTTCGTTTGCATATATTCATGGTTCTTGTGAGGACGTTTCTCAAACGCGATCCATCTTGAATACATTTTG
ACGAGTTTCTAGAACTTCCTTAAGTTTCAACTGCTGAAACTTGGTATGAGCGAACAAAATCGTAAGTTTCATAAACAAGA
CCC------GTGCCCTAGTGCGGGGTCCAACGACTTTGCGAATCACGAGGCAATCGGATGCCCGGCAAGGCTAGACAAGC
ACGTGCTCCTTCACCTGCATGCCCCTGCGAGTTTCCGAGCATACTTCCAACTACAGC------CATTTCACTAGATTATC
TCAAACCGAGCTAAACTAGTC--------ACTTGAGAAAGCAATTCAAAGCAACCCTAGCGCAGCCCCACCTCCCTCGAA
GAATACGCTACCATTGGACA--TGACGCGGTGGCGGCCGCTCCTACCCTAGAAGGTGGTAGGGGGAGCTCGAGGTGAACA
CGAACGCCATGGCGGTCGACATCGACGAGCGTGCGACTTGCTTTTCGAGGAAGGGGTGAAGTGGTTTCCTCATCTACACA
AGATAC-AACGGGGCTTTTTGCACACAATAAGGTCCCAACGAGCCACCATCATGTGGGCAGATGC
>chr5D_1
GAGGGTTAGACTTAGTGTACATACAAGTCCCAATCTAACTGAAATAATTGTTCCGTCCGGAAGGTACACTAGTGCGTAGC
ATACCTAGTGGGAATGTACCCATTGTAGGCTAAGCTAGCCTCCTGTTAGTTTAGCCAACTTAAATTACAGATCAGAACAT
GACAC--TACCCTGACAACAGTAGAATGCACATAGGCTCATGTGAGGAGCTCTTGCCTTGTGTGATGTTAATGTGAATAG
CATCTTGGGATGTCAAGCGGTGGTGCAAAAGCATATTAATTTTGAGATGTGCAAATTTCGCGTCGGTGAGGTATAAGTGA
TACATCCGTGAGATGTGCAAAAACATGTTAATTTTGATATGTGCATG-AAA-AAAATTCTAGTGGCATAATTAAAGCTTC
AGCA--CAATTGTCTAACCTTGA-CGGTGATACGCCAGTGGTGGCGGAGCCAATTTCGACAAAAGTCGGTGGACAAATAC
AGGTTGAGATCCATTCGGAAGGAGATTTACAGCTGGAGCTGATTTTCATTAAATTAGGACATTCAAGCATCTCATTATAT
CCTCCTATAGCTGCAATAGAATTGCACGTATTGTACTTTTCTGAAATTTGGTCAGACTCTTTGTTTCCGCCATCTTGTTC
TGGTTGAATTTTTCAGCGCAAATGATTCTCTCACATGCACGGCGGTGTGGATCTCAGTTAGGGCACATGCACACTGACAC
TGCAGGAATTTGTCGACGCCTAGTTAACCTTCTTAGAGCATCAAGAACATGGTGAACACGTCAGGAATGTATATCTTACT
AGTTTGAAAAACTTGATGTGCCAAAAGTCAAATAAGGAACAACGGAGGGCGGCTAAGTTAACCCG--AGTACCCATCTAC
AACTGTTAACAGTTTTCGTTAGAGGATATGCATGCTCATCATCATACTATAAAGCCCAGGGTGCAGTAGATACACAGTAC
ACAGAGCACAGCATACTCCTAGAAGACTTGCTCGGCCCAAGTACTACAGCGCTGTGTCTGTC--GTCATCTTCAACAATC
CAATGGGGAAGCAGACAGCAGTAGCTCTAGTGCTTCTCGGTGTGCTCTGTGGAATAGCTTCTCATGGGGTCGATGCCCAG
TATTACTGGACGACTGCCACGGCGACGTTCTACGGCGGCGGCGACGGCTCCGGCACTATGGGT----CAG----TTTCCC
TTCCGCTTCTTTACTTTCCTGTATCATTCTCCAGTGGAGAGTGCATAGCA----TCTAAATCTCTAGTTGTGGAGGGTGT
TTAAA-GGGTA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GAGTAG
A--TTTCTAGTAGTACGTTTG---GTGTGATATACTCTACTCATTCA----AAGGAGAAG------------------TG
ATGTTGATCTGATGATGTTTGTATTGTATGC-----------ATGTATGCAGGAGGCGCGTGTGGGTACGGCAACCTGTA
CAACTCGGGGTACGGGATCAACAACGCGGCGCTGAGCACGGCGCTGTTCAACGACGGCGCCATGTGCGGCGCGTGCTACA
CCATCTACTGCGACACCGGCCGGAGCAGGATGTGCAAGCCGGGCACCCAGATCACCGTCTCCGCCACCAACTTCTGCCCG
CCCAACTGGGCGCTCCCCA---GCGACAACGGCGGCTGGTGCAACCCGCCGCGGGTGCACTTCGACATGTCGCAGCCCGC
CTGGACCAGCATCGCCATCTACGAGGCCGGCATCGTCCCCGTCGTGTACAGGAGGTGATTACCACATCCACACACGAGAG
TTGATAGTTGATATCTACGCAGATCTTTTGTATGAAGCGATGCTACTTCACTTGTGCCTGCAGGGTGTCGTGCCAGAAGC
GCGACGGCATCCGGTTCGGCATCTCCGGGAGGGACTACTTCGAGCTGGTGGTGGTGACCAACGTCGGCGGCAGCGGGGTC
GTGTCCCAGATGTG-GATCAAGGGCTCCAACACCAACTGGCTCGCCATGAGCCGCAACTGGGGCGCCAACTGGCAGAGCA
ACGCCTACCTCAACGGCCAGAGGCTCTCCTTCAGGGTCAGGCTCGACGACGGCCGCGAGGCCACGGCCAGCGACGTCGCG
CCCTCCAACTGGTGGTTCGGGGCCACCTACACTTCCTGGGTGAACTTCTACTAGCGTCTAGAGGATCATCAAACCAGTCG
---ATCGACGACACTGCTTCTTAATCTATCAT---TAGTATATACTAGTAGTAGTATTACTAAATCGTAAGACGCCCTCT
GTTGCGTTCGC-----TATACTTGTGTTTGGCAGCCGCACATTATTCGTTCATGTTTTAGAGG-----------------
----------CACTCTCTTTCTTGCACCTACACATAATAACCTGAAGCTTCACA------AACCAGGCAAGCACACAATG
CGCAACTAA---GAATTGTAAAAGAAAAATTGTACGAAATGAAGACGGCATACC----GGGAGCGGATTTGCAGCACGCA
GGGGCGGGGTCACGCAGCCCA-TTTTTTCTTTTGGCTTTCTGTTTTCAGTCTTTTAAGTATATGC-TTTGAACCAAAAGT
CCAAATTAAGTTTCCTTTGCATATTCG--TGATTCTTGTGATGAGGGCTTTTGAATGAGATCCATTTTGAATCG------
-------------------TTAAGTTTCAACTGTTGAAACATGGTATGACAACAATCGAAGTTTCAAGAACCAACACTTA
AAACTTGTTGTGCCCTAATGCGGTATCCATCGAGTTTACGAATCACGAGGCAATCGGGTGGCCGGCGCGGCTAGACAGGT
GCGTGCTCCTTCACCTGCGTGCCCCTGCGAGTTTCCGAGCATACTTCCAACTATAGC------CATTTCACTAG-TTATC
TCAAACCGAGCTAAACTAGTCTCATCGTCACTTGGGAAAGCAACTCGAGGCAACCCTAACGCAGCCCCACCTCCCTCGAT
GAAC-TGCTGCCATTGGACATATGACGGGGTGGCGGCCACTCCTACCCTAGAAGTTGGTAGGCGGAGCTTGAGGTGAACA
AGAACGCCATGGCGGTCAACATCAATGAGCGTGCGACTTGCTTTTCGAGAAAGGGATGAGGTGGTTTCCTAGTCTGCACA
ACATACAAACGGGGATTTTTGCACACAACAAGGTGCCAACGAGCCACCATCGTGTGGGCAGATGC
>chr4A_1
GAGGGTTAGACTTAGTGTACATACAAGTCTCAATCTAACTGAAATAATTGT-CCGTCCGGAATGTACACTAGTGCGTAGC
ATACCTAGTGGGAATGTACCCATTGTAGGCTAAGCTAGCCTACTGTTAGTTTAGCCAAGTAAAATCACATATCAGAACAT
GGCACTATACCCTGACAACAGTAGACTGCACATAGGCTCATGTGGCGAGATCTTGCCTTGTGTGATGTTAATGTGAGCAG
CTTCTCGGGATGTCAAGCGGTGGTGCAAAAACATATTAATTTTGAGATGTGCAAATTTCACATCGGTGAGGTATAAGTGA
TACGTCGGTGAGATGTGCAAAAACATGTTAATTTTGATATGTGCATGAAAA-AAAATTCTAGTGGCATAATTAAAGCTTC
AGCA--CAATTGTCTAACCTTGA-CGGTGATACGCCAGTGGTGGCGGTGCCAATTTCGACGAAAGTCGGTGGAGAAATCC
AGGTTGAGATCCATTCGGAAGGAGATTTACAGCTGGAGCTGATTTTCATTAGATTAGGACATTCAAGCATCTCGTTATAT
CCTCCTATAGCTGCAATAGAATTGCACGTATTGTACTTTTCTGAAATTTGGTCAGACTCTTTGTTTCCACCATCTTGTTC
TGGTTGAATTTTTCAGCGCAAAGGATTCTCTCACATGCACGGCGGTGTGGATCTCAGTTAGGGCACATGCACGCTGACAG
TGCAGGAATTTGTCGAGACGTAGTTAAACTTCTTGGAGCATCAAGAACATGGTGAACACGTCAGGAATGTATATCTTACT
AGTTTGAAAAACTTGATGTGCCAAAAGTCAAATAAGGAACGATGGAGGGCGGCTAAGTTAACCCGCGAGTACCCAACTGC
AACTGTACCA-------GTTAGAGGATATGCATGCTCATCATCATACTATAAAGCCCAGGGTGCAGTAGGTACACAGTAC
ACAAGGCACAGCATAT---TACAAGACTTGCTCGGCCCAAGCAGTACTATCTCCCTCTCTGTCTGTCATCTTCAACAATC
CAATGGAGAAACAGACAGCAGTAGCACTAGTGCTGCTCAGCGTGCTCTGTGGAATAGCCTCTCATGGGGTCGACGCCCAG
TATTACTGGACGACCGCCACGGCGACGTTCTACGGGGGCGGCGACGGCTCCGGCACCATGGGT----CAGTCAGTTTCCC
ACTCACTTCTTTACTCTCTCTCTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTCTGCAATTGTAAATAGAGGAGTAG
ATTTGTACGTAGTGTACCGTGTACGTGTGATCTATTCTAGTCATCCA----AAGGAAAAGTGTCAGCTAGCTCTTGGTTG
ATGTGGATCTGATGATGTTTCTATCGTATGTAAC----------GTATGCAGGAGGCGCGTGTGGGTACGGCAACCTGTA
CAGCTCCGGGTACGGGATCAACAACGCGGCGCTGAGCACGGCGCTGTTCAACGACGGCGCCATGTGCGGCGCGTGCTACA
CCATCTACTGCGACACCGGCAGGAGCAGGATGTGCAAGCCGGGCACCCAGATCACCGTCTCCGCCACCAACTTCTGCCCG
CCCAACTGGGCGCTCCCCA---GCGACAACGGCGGCTGGTGCAACCCGCCGCGGGTGCACTTCGACATGTCGCAGCCCGC
CTGGACCAGCATCGCCATCTACGAGGCCGGCATCGTCCCCGTCGTGTACAGGAGG-------------------------
----------------------------------------------------------------GTCTCCTGCCAGAAGC
GCGACGGCATCCGCTTCGGCATCTCCGGGAGGGACTACTTCGAGCTGGTGGTGGTCACCAACGTCGGCGGCAGCGGGGTC
GTGTCCCAGATGTG-GATCAAGGGCTCCAACACCAACTGGCTCGCCATGAGCCGCAACTGGGGCGCCAACTGGCAGAGCA
ACGCCTTCCTCAACGGCCAGAGGCTCTCCTTCAGGGTCAGGCTCGACGACGGCCGCGAGGCCACCGCCAGCGACGTCGCG
CCCTCCAACTGGTGGTTCGGGGCCACCTACACTTCCTGGGTCAACTTCTACTAGCGTCTAGCGGATCATCGTCAAACCGA
TCCATCGACGCCACTGCTTAATCGTCTATCAT---TAGTATATATAGCAAGTATTAAATCAAAGGGTAGGG-CGCCCTCT
GTTGCGTTCGC-----TATAGTTGTGTTTGGCAGCCGCAC---ATTCGTCCGTGTTTTACTTTTAGATTAGAGG------
------------CACTCTTTCTTGCACCTACACATAATAACCTGAAGCTAATTCACAAATAATCAGGCAAGCACACAATG
CGCACCTAATAAGAATTGTAAAAGAAAAACTGTACGGAATGAAGACGGCATAGC----GGGGGCGGATTTGCAGCACGCA
GGGGCGGGGTCACGCAGCCAATTTTTTTCTTTCGGTTTGCTGTTTTCAGTCTTTTAAGTATATG-TTTTGAATCAAAGGT
CCAAATTAAGTTTCCTTTGCATATTTG--TGATTCTTGTGATGAGGGCTTTTGAATGAGATCTATTTCGAATCG------
-------------------TTAAGTTTCAACTGCTGAAACTTGGTATGACAAAAATCAAAGTCTCAGGAACCAACACTTA
AAACTTGTTGTGCCCTAATGCGGTATCCATCGAGTTTGCGAATCACGAGGCAATCGGGTGGCTGGCGCGGATAGACAGGT
GCATGCTCCTTCACCCACGTGCCCCTGCGAGTTTCCGAGCATACTTCCAACTATAGCTAGGGCCATTTCACTAG-TTATC
TCAAACCGAGCTAAACTAATCTTGTCGTCACCCGGGAAAGCAACTCGAGGCAACCCTAGGGCAGCCCCACCTCCCTCGTT
GAAC-CGCTGCCATTGGACATATGACGGGGTGGCGGCCGCTCCTACCCTAGAAGGTGGTAGGCGGAGCTTGAGGTGAACA
CGAACGCCATGGCGGTCAATGTCGATGAGCGTGCGACTTGCTTTTCGAGGAAGGGATGAGGTGGTTTCCTAGTCTGCACA
ACATACAAACGGGGATTTTTGCACACAACAAGGTGCCAACGAGCCACCATCGTGTGGGCAGATGC
>chr4D_1359
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------------------------------------------------GCAGGCGGCGCTTGCGGGTACGGCAACCTGTA
CTCGACGGGGTACGGGACGGACACGGCGGCGCTGAGCACGTCCCTCTTCAACGACGGGGCGGCGTGCGGGGAGTGCTACC
AGGTGCAGTGCGACCAGGGCAGCTCCCCGAACTGCAAGCCGGGGGTGACGGTCACCATCACCGCCACCAACCTCTGCCCG
ACGGACTACTCCAAGCCCA---ACGACAACGGCGGCTGGTGCAACCCGCCGCGCAAGCACCTGGACATGGCGCAGCCCGC
GTGGGAGCGCATCGGCGTCTACCGCGCCGGCATCGTGCCCATCCTGTTCCAGCGG-------------------------
----------------------------------------------------------------GTGTCCTGCTCCAGGA
GCGGCGGCGTGCGGTTCACCATCAACGGCAACAGCTACTTCGAGCTGGTGCTCATCACCAACGTCGGCGGGC-CGGGGTC
GGTCAGGGCGGTGCAGATCAAGGGGTCCCGCACCGGGTGGACCACCATGTCCCGGAACTGGGGCGCGAACTGGCAGTCCA
ACAGCTACCTCAACGGGCAG------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------
>chr3D_1360
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-------------------------------------------------CAGGCGGCGCCTGCGGGTACGGCAACCTGTA
CGGCGCGGGGTACGGCACGCAGACGACGGCGCTGAGCACCGCCCTCTTCAACAACGGCGCGTCGTGCGGGGCGTGCTTCA
CGATCGCGTGCGACACGCGCAAGTCGCGGATGTGCAAGCCGGGGGCCTCCATCACCGTCACGGCCACCAACTTCTGCCCG
CCCAACTACGCGCTCGCCG---GCGACAACGGCGGCTGGTGCAACCCGCCGCGGCAGCACTTCGACATGGCCCAGCCGGC
ATGGGAGACCATCGCCGTCTACAAGGCCGGCATCGTCCCCGTCAACTACAGGAGG-------------------------
----------------------------------------------------------------GTGCGCTGCCAGCGGA
GCGGCGGGATCAGGTTCACCATCAACGGCCACAGCTACTTCGAGCTGGTGCTGGTGACCAACGTGGGCGGCAGCGGCGGC
GTGGCGCAGATGTG-GATCAAGGGCTCCCGCACCAACTGGATGGAGATGAGCCGGAACTGGGGCGCGAACTGGCAGAGCA
ACGCCAAGCTCGACGGGCAGAGCCTCTCGTTCCGCCTCAAATCCGACGACGGCCGCGTCGTCACGGCCAACGACGTCGCG
CCGGCCGGGTGGTGGTTCGGCGGCACGTACACGTCCGGGGCTCAGTTCTACT----------------------------
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>chr3B_1360
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-------------------------------------------------CAGGCGGCGCCTGCGGGTACGGCAACCTGTA
CGGCGCGGGGTACGGCACGCAGACGACGGCGCTGAGCACCGCCCTCTTCAACAACGGCGCGTCCTGCGGGGCGTGCTTCA
CGATCGCGTGCGACACGCGCAAGTCGCGGATGTGCAAGCCGGGGACCTCCATCACCGTCACGGCCACCAACTTCTGCCCG
CCCAACTACGCGCTCGCCG---GCGACAACGGCGGCTGGTGCAACCCGCCGCGGCAGCACTTCGACATGGCCCAGCCGGC
GTGGGAAACCATCGCTGTGTACAAGGCCGGCATCGTCCCCGTCAACTACAGGAGG-------------------------
----------------------------------------------------------------GTGCGCTGCCAGCGGA
GCGGCGGGATCAGGTTCACCATCAACGGGCACAGCTACTTCGAGCTGGTGCTGGTGACCAACGTGGGCGGCAGCGGTGGC
GTGGCGCAGATGTG-GATCAAGGGCTCCCGCACCAACTGGATGGAGATGAGCCGGAACTGGGGCGCAAACTGGCAGAGCA
ACGCCAAGCTCGACGGGCAGAGCCTCTCGTTCCGCGTCAAATCCGACGACGGCCGCGTCGTCACGGCCAACGACGTCGCG
CCGCCCGGGTGGTGGTTCGGCGGCACGTACACGTCCGGG-----------------------------------------
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>chr3A_1360
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-------------------------------------------------CAGGCGGCGCCTGCGGGTACGGCAACCTGTA
CGGCGCGGGGTACGGCACGCGGACGACGGCGCTGAGCACCGCCCTGTTCAACAACGGCGCGTCGTGCGGGGCGTGCTTCA
CGATCGCGTGCGACACGCGCAAGTCGCGGATGTGCAAGCCGGGGGCCTCCATCACCGTCACGGCCACCAACTTCTGCCCG
CCCAACTACGCGCTCGCCGGCGGCGACAACGGCGGCTGGTGCAACCCGCCGCGGCAGCACTTCGACATGGCCCAGCCGGC
GTGGGAGACCATCGCCGTCTACAAGGCCGGCATCGTCCCCGTCAACTACAGGAGG-------------------------
----------------------------------------------------------------GTGCGCTGCCAGCGGA
GCGGCGGGATCAGGTTCACCATCAACGGCCACAGCTACTTCGAGCTGGTGCTGGTGACCAACGTGGGCGGCAGCGGCGGC
GTGGCGCAGATGTG-GATCAAGGGCTCCCGCACCAACTGGATGGAGATGAGCCGGAACTGGGGCGCAAACTGGCAGAGCA
ACGCCAACCTCGACGGCCAGAGCCTCTCGTTCCGCGTCAAATCCGACGACGGCCGCGTCGTCACGGCCAACGACGTCGCG
CCGCCCGGGTGGTGGTTCGGCGGCACGTACACGTCC--------------------------------------------
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>SNPs
--------------------------------------S------S----------------------------------
--------S--------------------------------------------------S----S---------S-----
--------------------S-S---------------------S-----------------------------------
----------------------------------S----------------S------S-----------S---------
-------S-S-----------------------------------------S----------------------------
----SS---------------SSS--------------------------------------------------------
--------------S--------------S--------------------------------------------------
--------------------------------------------------------------------S-----------
------------------------------------------S---------------------------S---------
---------------------------------------S--------------------------S-S-----------
---------------------------------------S----------------------------------------
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------S-----
-------------S------------------------------------------------------------------
---------------------------------------------------------------SSSS-------------
--------------------------------S--------------S-SSSSS------------------S--S----
-----S--------------------------------------------------------------------------
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------------S----------------------------------SSSS-----------------------------
-------------------------S------SSSSSSSSSS--------------------------------------
---------------------------------------------------S----------------------------
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---------------------------------------------------------------------S---------S
---------------------------------------S---------------SSSSS-SSSSS-SSS----------
----------S-------S-------------SSS-----------S------------S-S-SSS--------------
------S-SSSSSSSS-------------SSS-SSS--SSSSSSS-SSS-SSSSSSSSS----S-SSSSS-SSSSSSSSS
SSSSSSSSSS---------------------S--------------------S---------------------------
---------S--SS----------S-----------------------------SSSS-----------S----------
---------S------SS-----------------------S-S-SSSS--SS-S--S-----SS--S------------
S-------------S---------S-SSS--S---------S--S-SS-S-SS--S-S-------S------SSSSSSSS
SSSSSSSSSSSSSSSSSSS------------------------------SSS--SSS--SSS-SSSSSSSSS--SSSSS-
SSS--------------S-----SS----S---S-----------------------S--S-----SS---------S-S
S-----------------S----------------------------------S--------------------S-----
----------------------------------S--------S--S-S------------------------------S
---SS----S-----------------S----------------------------------S------S----------
-----------------S-------S-----------------------------S---S----------SS---S----
-S------------S-------------S-----S----------------S-------------
>forward_711
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---------------------------------------------------TCTCAGTTAGGGCACATGCG---------
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>reverse_2609
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------------------------------------------------GCATCAGGAACCATGCAAGC------------
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